RNA–Protein interactions for RNA: ENST00000576019.5

VPS53-219, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 3

Gene VPS53, Length 613 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-219ENST00000576019 TMEM269A0A1B0GVZ9 245 aa3.56□□□□□ -1.84
VPS53-219ENST00000576019 A0A1W2PRE2 83 aa3.56□□□□□ -1.84
VPS53-219ENST00000576019 IGSF23A1L1A6 192 aa3.56□□□□□ -1.84
VPS53-219ENST00000576019 MIF4GDA9UHW6 222 aaKnown RBP3.56□□□□□ -1.84
VPS53-219ENST00000576019 SMIM24O75264 130 aa3.56□□□□□ -1.84
VPS53-219ENST00000576019 SRP19P09132 144 aaKnown RBP3.56□□□□□ -1.84
VPS53-219ENST00000576019 RBP1P09455 135 aa3.56□□□□□ -1.84
VPS53-219ENST00000576019 GZMHP20718 246 aa3.56□□□□□ -1.84
VPS53-219ENST00000576019 PPIBP23284 216 aaKnown RBP3.56□□□□□ -1.84
VPS53-219ENST00000576019 ATP5G3P48201 142 aa3.56□□□□□ -1.84
VPS53-219ENST00000576019 SERPINB10P48595 397 aa3.56□□□□□ -1.84
VPS53-219ENST00000576019 FUT5Q11128 374 aa3.56□□□□□ -1.84
VPS53-219ENST00000576019 LDLRAD2Q5SZI1 272 aa3.56□□□□□ -1.84
VPS53-219ENST00000576019 SPATA12Q7Z6I5 190 aa3.56□□□□□ -1.84
VPS53-219ENST00000576019 MORN4Q8NDC4 146 aa3.56□□□□□ -1.84
VPS53-219ENST00000576019 DYNLRB1Q9NP97 96 aa3.56□□□□□ -1.84
VPS53-219ENST00000576019 SSPOA2VEC9 5147 aa3.56□□□□□ -1.84
VPS53-219ENST00000576019 TRBV24-1A0A075B6N3 115 aa3.55□□□□□ -1.84
VPS53-219ENST00000576019 IGKV3D-20A0A0C4DH25 116 aa3.55□□□□□ -1.84
VPS53-219ENST00000576019 PRORSD1PA6NEY8 169 aa3.55□□□□□ -1.84
VPS53-219ENST00000576019 M0QZK8 103 aa3.55□□□□□ -1.84
VPS53-219ENST00000576019 TP53I11O14683 189 aa3.55□□□□□ -1.84
VPS53-219ENST00000576019 PIAS1O75925 651 aa3.55□□□□□ -1.84
VPS53-219ENST00000576019 PPBPP02775 128 aa3.55□□□□□ -1.84
VPS53-219ENST00000576019 SCGB1A1P11684 91 aa3.55□□□□□ -1.84
VPS53-219ENST00000576019 CMPK1P30085 196 aa3.55□□□□□ -1.84
VPS53-219ENST00000576019 PSPHP78330 225 aa3.55□□□□□ -1.84
VPS53-219ENST00000576019 ZNF616Q08AN1 781 aa3.55□□□□□ -1.84
VPS53-219ENST00000576019 SLC25A34Q6PIV7 304 aa3.55□□□□□ -1.84
VPS53-219ENST00000576019 ZNF695Q8IW36 515 aa3.55□□□□□ -1.84
VPS53-219ENST00000576019 CD200R1Q8TD46 325 aa3.55□□□□□ -1.84
VPS53-219ENST00000576019 SLC7A6Q92536 515 aa3.55□□□□□ -1.84
VPS53-219ENST00000576019 EFCAB1Q9HAE3 211 aa3.55□□□□□ -1.84
VPS53-219ENST00000576019 SNX12Q9UMY4 172 aa3.55□□□□□ -1.84
VPS53-219ENST00000576019 MED6O75586 246 aa3.54□□□□□ -1.84
VPS53-219ENST00000576019 TFPTP0C1Z6 253 aa3.54□□□□□ -1.84
VPS53-219ENST00000576019 IGHV3-30-3P0DP02 117 aa3.54□□□□□ -1.84
VPS53-219ENST00000576019 S100A7P31151 101 aa3.54□□□□□ -1.84
VPS53-219ENST00000576019 LGALS9BQ3B8N2 356 aa3.54□□□□□ -1.84
VPS53-219ENST00000576019 C2orf83Q53S99 150 aa3.54□□□□□ -1.84
VPS53-219ENST00000576019 SAMD13Q5VXD3 122 aa3.54□□□□□ -1.84
VPS53-219ENST00000576019 Q6Q795 121 aa3.54□□□□□ -1.84
VPS53-219ENST00000576019 RASL11AQ6T310 242 aa3.54□□□□□ -1.84
VPS53-219ENST00000576019 SKA2Q8WVK7 121 aaPredicted RBP3.54□□□□□ -1.84
VPS53-219ENST00000576019 DNAJC30Q96LL9 226 aa3.54□□□□□ -1.84
VPS53-219ENST00000576019 EFCAB11Q9BUY7 163 aa3.54□□□□□ -1.84
VPS53-219ENST00000576019 C1orf50Q9BV19 199 aa3.54□□□□□ -1.84
VPS53-219ENST00000576019 KRTAP1-5Q9BYS1 174 aa3.54□□□□□ -1.84
VPS53-219ENST00000576019 OR8D2Q9GZM6 311 aa3.54□□□□□ -1.84
VPS53-219ENST00000576019 C20orf27Q9GZN8 174 aa3.54□□□□□ -1.84
VPS53-219ENST00000576019 VCXQ9H320 206 aa3.54□□□□□ -1.84
VPS53-219ENST00000576019 TVP23BQ9NYZ1 205 aa3.54□□□□□ -1.84
VPS53-219ENST00000576019 TP73-AS1Q9UF72 201 aa3.54□□□□□ -1.84
VPS53-219ENST00000576019 AGRNO00468 2067 aa3.53□□□□□ -1.84
VPS53-219ENST00000576019 A0A087WUU8 490 aa3.53□□□□□ -1.84
VPS53-219ENST00000576019 IGKV1D-43A0A0B4J1Z2 117 aa3.53□□□□□ -1.84
VPS53-219ENST00000576019 TRAV4A0A0B4J268 109 aa3.53□□□□□ -1.84
VPS53-219ENST00000576019 C7orf66A4D0T2 115 aa3.53□□□□□ -1.84
VPS53-219ENST00000576019 AIPO00170 330 aa3.53□□□□□ -1.84
VPS53-219ENST00000576019 SLC17A3O00476 420 aa3.53□□□□□ -1.84
VPS53-219ENST00000576019 BANF1O75531 89 aa3.53□□□□□ -1.84
VPS53-219ENST00000576019 IGLV7-43P04211 117 aa3.53□□□□□ -1.84
VPS53-219ENST00000576019 NPPCP23582 126 aa3.53□□□□□ -1.84
VPS53-219ENST00000576019 LINC00483Q53H64 154 aa3.53□□□□□ -1.84
VPS53-219ENST00000576019 DHFR2Q86XF0 187 aa3.53□□□□□ -1.84
VPS53-219ENST00000576019 LYPD1Q8N2G4 141 aa3.53□□□□□ -1.84
VPS53-219ENST00000576019 ST20-AS1Q8NBB2 130 aa3.53□□□□□ -1.84
VPS53-219ENST00000576019 C11orf40Q8WZ69 217 aa3.53□□□□□ -1.84
VPS53-219ENST00000576019 TOMM6Q96B49 74 aa3.53□□□□□ -1.84
VPS53-219ENST00000576019 SERPINI1Q99574 410 aa3.53□□□□□ -1.84
VPS53-219ENST00000576019 MGLLQ99685 303 aa3.53□□□□□ -1.84
VPS53-219ENST00000576019 SPIN2AQ99865 258 aa3.53□□□□□ -1.84
VPS53-219ENST00000576019 SPIN2BQ9BPZ2 258 aa3.53□□□□□ -1.84
VPS53-219ENST00000576019 C11orf1Q9H5F2 150 aa3.53□□□□□ -1.84
VPS53-219ENST00000576019 MED11Q9P086 117 aa3.53□□□□□ -1.84
VPS53-219ENST00000576019 KLK5Q9Y337 293 aaPredicted RBP3.53□□□□□ -1.84
VPS53-219ENST00000576019 NUBP2Q9Y5Y2 271 aa3.53□□□□□ -1.84
VPS53-219ENST00000576019 SORL1Q92673 2214 aa3.52□□□□□ -1.85
VPS53-219ENST00000576019 BET1O15155 118 aa3.52□□□□□ -1.85
VPS53-219ENST00000576019 IGF2P01344 180 aa3.52□□□□□ -1.85
VPS53-219ENST00000576019 CSN2P05814 226 aa3.52□□□□□ -1.85
VPS53-219ENST00000576019 SDC4P31431 198 aa3.52□□□□□ -1.85
VPS53-219ENST00000576019 CSN1S1P47710 185 aa3.52□□□□□ -1.85
VPS53-219ENST00000576019 GABRA2P47869 451 aa3.52□□□□□ -1.85
VPS53-219ENST00000576019 ZNF709Q8N972 641 aa3.52□□□□□ -1.85
VPS53-219ENST00000576019 FOPNLQ96NB1 174 aa3.52□□□□□ -1.85
VPS53-219ENST00000576019 SEC22CQ9BRL7 303 aa3.52□□□□□ -1.85
VPS53-219ENST00000576019 TMEM70Q9BUB7 260 aa3.52□□□□□ -1.85
VPS53-219ENST00000576019 CHST6Q9GZX3 395 aa3.52□□□□□ -1.85
VPS53-219ENST00000576019 GSKIPQ9P0R6 139 aa3.52□□□□□ -1.85
VPS53-219ENST00000576019 OR52A1Q9UKL2 312 aa3.52□□□□□ -1.85
VPS53-219ENST00000576019 AMMECR1Q9Y4X0 333 aaPredicted RBP3.52□□□□□ -1.85
VPS53-219ENST00000576019 DSCAML1Q8TD84 2053 aa3.51□□□□□ -1.85
VPS53-219ENST00000576019 IGLV3-16A0A075B6K0 115 aa3.51□□□□□ -1.85
VPS53-219ENST00000576019 TRBV19A0A075B6N1 114 aa3.51□□□□□ -1.85
VPS53-219ENST00000576019 C19orf71A6NCJ1 209 aa3.51□□□□□ -1.85
VPS53-219ENST00000576019 ZNF98A6NK75 572 aa3.51□□□□□ -1.85
VPS53-219ENST00000576019 RIIAD1A6NNX1 92 aa3.51□□□□□ -1.85
VPS53-219ENST00000576019 A8MWP6 167 aa3.51□□□□□ -1.85
VPS53-219ENST00000576019 PFDN1O60925 122 aa3.51□□□□□ -1.85
Retrieved 100 of 20,778 RNA–protein pairs in 88.5 ms