RNA–Protein interactions for RNA: ENST00000575207.5

VPS53-218, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 4

Gene VPS53, Length 575 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-218ENST00000575207 FAM231BA6NCW3 169 aa10.05□□□□□ -0.8
VPS53-218ENST00000575207 H3BTX0 84 aa10.05□□□□□ -0.8
VPS53-218ENST00000575207 IL5P05113 134 aa10.05□□□□□ -0.8
VPS53-218ENST00000575207 PRSS1P07477 247 aa10.05□□□□□ -0.8
VPS53-218ENST00000575207 MXD1Q05195 221 aa10.05□□□□□ -0.8
VPS53-218ENST00000575207 C4orf46Q504U0 113 aa10.05□□□□□ -0.8
VPS53-218ENST00000575207 TMEM268Q5VZI3 342 aa10.05□□□□□ -0.8
VPS53-218ENST00000575207 PRSS48Q7RTY5 328 aa10.05□□□□□ -0.8
VPS53-218ENST00000575207 UBE2WQ96B02 151 aa10.05□□□□□ -0.8
VPS53-218ENST00000575207 PRADC1Q9BSG0 188 aa10.05□□□□□ -0.8
VPS53-218ENST00000575207 SPXQ9BT56 116 aa10.05□□□□□ -0.8
VPS53-218ENST00000575207 SH3BGRL3Q9H299 93 aa10.05□□□□□ -0.8
VPS53-218ENST00000575207 PAIP2BQ9ULR5 123 aaKnown RBP10.05□□□□□ -0.8
VPS53-218ENST00000575207 USP17L23D6RBM5 183 aa10.04□□□□□ -0.8
VPS53-218ENST00000575207 SDC2P34741 201 aa10.04□□□□□ -0.8
VPS53-218ENST00000575207 SRSF3P84103 164 aaKnown RBP10.04□□□□□ -0.8
VPS53-218ENST00000575207 AKR1C1Q04828 323 aa10.04□□□□□ -0.8
VPS53-218ENST00000575207 ERCC8Q13216 396 aa10.04□□□□□ -0.8
VPS53-218ENST00000575207 LHFPL1Q86WI0 220 aa10.04□□□□□ -0.8
VPS53-218ENST00000575207 SPACA4Q8TDM5 124 aa10.04□□□□□ -0.8
VPS53-218ENST00000575207 KLK12Q9UKR0 248 aa10.04□□□□□ -0.8
VPS53-218ENST00000575207 TRAV26-2A0A0B4J265 109 aa10.03□□□□□ -0.8
VPS53-218ENST00000575207 TEX13DA0A0J9YY54 714 aaPredicted RBP10.03□□□□□ -0.8
VPS53-218ENST00000575207 CLEC2LP0C7M8 214 aa10.03□□□□□ -0.8
VPS53-218ENST00000575207 LINC00869P0C866 280 aa10.03□□□□□ -0.8
VPS53-218ENST00000575207 CRISP2P16562 243 aa10.03□□□□□ -0.8
VPS53-218ENST00000575207 PLP1P60201 277 aa10.03□□□□□ -0.8
VPS53-218ENST00000575207 RHOHQ15669 191 aa10.03□□□□□ -0.8
VPS53-218ENST00000575207 PRR9Q5T870 116 aa10.03□□□□□ -0.8
VPS53-218ENST00000575207 CYP2G1PQ6ZSU1 146 aa10.03□□□□□ -0.8
VPS53-218ENST00000575207 ZFAND1Q8TCF1 268 aa10.03□□□□□ -0.8
VPS53-218ENST00000575207 GPX8Q8TED1 209 aa10.03□□□□□ -0.8
VPS53-218ENST00000575207 PSORS1C2Q9UIG4 136 aa10.03□□□□□ -0.8
VPS53-218ENST00000575207 URGCP-MRPS24S4R325 110 aa10.03□□□□□ -0.8
VPS53-218ENST00000575207 NMBP08949 121 aa10.02□□□□□ -0.81
VPS53-218ENST00000575207 GTSF1Q8WW33 167 aa10.02□□□□□ -0.81
VPS53-218ENST00000575207 LINC00477Q96M19 166 aa10.02□□□□□ -0.81
VPS53-218ENST00000575207 CHTF8P0CG12 524 aa10.01□□□□□ -0.81
VPS53-218ENST00000575207 NIT1Q86X76 327 aa10.01□□□□□ -0.81
VPS53-218ENST00000575207 BPIFA4PQ86YQ2 179 aa10.01□□□□□ -0.81
VPS53-218ENST00000575207 ZNF664Q8N3J9 261 aa10.01□□□□□ -0.81
VPS53-218ENST00000575207 OR13C8Q8NGS7 320 aa10.01□□□□□ -0.81
VPS53-218ENST00000575207 SAT2Q96F10 170 aaPredicted RBP10.01□□□□□ -0.81
VPS53-218ENST00000575207 C1orf43Q9BWL3 253 aa10.01□□□□□ -0.81
VPS53-218ENST00000575207 SRRQ9GZT4 340 aa10.01□□□□□ -0.81
VPS53-218ENST00000575207 TRBV6-4A0A1B0GX49 114 aa10□□□□□ -0.81
VPS53-218ENST00000575207 PRSS46E5RG02 174 aa10□□□□□ -0.81
VPS53-218ENST00000575207 TNFAIP8O95379 198 aa10□□□□□ -0.81
VPS53-218ENST00000575207 CCR6P51684 374 aa10□□□□□ -0.81
VPS53-218ENST00000575207 POLR2GP62487 172 aaKnown RBP eCLIP10□□□□□ -0.81
VPS53-218ENST00000575207 SMCO1Q147U7 214 aa10□□□□□ -0.81
VPS53-218ENST00000575207 PATE2Q6UY27 113 aa10□□□□□ -0.81
VPS53-218ENST00000575207 ZFAND2AQ8N6M9 145 aa10□□□□□ -0.81
VPS53-218ENST00000575207 AGPAT4-IT1Q9H0P7 198 aa10□□□□□ -0.81
VPS53-218ENST00000575207 ARV1Q9H2C2 271 aa10□□□□□ -0.81
VPS53-218ENST00000575207 FBLL1A6NHQ2 334 aaKnown RBP9.99□□□□□ -0.81
VPS53-218ENST00000575207 RAB31Q13636 194 aa9.99□□□□□ -0.81
VPS53-218ENST00000575207 UBE2NLQ5JXB2 153 aa9.99□□□□□ -0.81
VPS53-218ENST00000575207 MUC21Q5SSG8 566 aa9.99□□□□□ -0.81
VPS53-218ENST00000575207 OR10G9Q8NGN4 311 aa9.99□□□□□ -0.81
VPS53-218ENST00000575207 ARL6Q9H0F7 186 aa9.99□□□□□ -0.81
VPS53-218ENST00000575207 NAA60Q9H7X0 242 aa9.99□□□□□ -0.81
VPS53-218ENST00000575207 IGLC2P0DOY2 106 aa9.98□□□□□ -0.81
VPS53-218ENST00000575207 AKR1C4P17516 323 aa9.98□□□□□ -0.81
VPS53-218ENST00000575207 SELENOTP62341 195 aa9.98□□□□□ -0.81
VPS53-218ENST00000575207 Q0VG73 95 aa9.98□□□□□ -0.81
VPS53-218ENST00000575207 Q8TAT8 98 aa9.98□□□□□ -0.81
VPS53-218ENST00000575207 ANKRD65E5RJM6 399 aa9.97□□□□□ -0.81
VPS53-218ENST00000575207 H3BQ15 152 aa9.97□□□□□ -0.81
VPS53-218ENST00000575207 M0R2P5 195 aa9.97□□□□□ -0.81
VPS53-218ENST00000575207 ZNF253O75346 499 aa9.97□□□□□ -0.81
VPS53-218ENST00000575207 IAPPP10997 89 aa9.97□□□□□ -0.81
VPS53-218ENST00000575207 LINC01547P58512 204 aaPredicted RBP9.97□□□□□ -0.81
VPS53-218ENST00000575207 BAK1Q16611 211 aa9.97□□□□□ -0.81
VPS53-218ENST00000575207 TMEM183BQ1AE95 376 aa9.97□□□□□ -0.81
VPS53-218ENST00000575207 RNASE10Q5GAN6 216 aaKnown RBP9.97□□□□□ -0.81
VPS53-218ENST00000575207 LINC00305Q7Z4B0 112 aa9.97□□□□□ -0.81
VPS53-218ENST00000575207 TMEM183AQ8IXX5 376 aa9.97□□□□□ -0.81
VPS53-218ENST00000575207 OR52I2Q8NH67 350 aa9.97□□□□□ -0.81
VPS53-218ENST00000575207 MRPL53Q96EL3 112 aaKnown RBP9.97□□□□□ -0.81
VPS53-218ENST00000575207 TRGV11A0A075B6L2 103 aa9.96□□□□□ -0.82
VPS53-218ENST00000575207 A0A087WWC5 75 aa9.96□□□□□ -0.82
VPS53-218ENST00000575207 M0R3E3 92 aa9.96□□□□□ -0.82
VPS53-218ENST00000575207 HLA-DQA1P01909 254 aa9.96□□□□□ -0.82
VPS53-218ENST00000575207 ELOBQ15370 118 aa9.96□□□□□ -0.82
VPS53-218ENST00000575207 TERB2Q8NHR7 220 aa9.96□□□□□ -0.82
VPS53-218ENST00000575207 MARCH1Q8TCQ1 289 aa9.96□□□□□ -0.82
VPS53-218ENST00000575207 UBE2MP61081 183 aaKnown RBP9.95□□□□□ -0.82
VPS53-218ENST00000575207 GUK1Q16774 197 aa9.95□□□□□ -0.82
VPS53-218ENST00000575207 YIPF6Q96EC8 236 aa9.95□□□□□ -0.82
VPS53-218ENST00000575207 IGHV3-64A0A075B6Q5 118 aa9.94□□□□□ -0.82
VPS53-218ENST00000575207 SMCO3A2RU48 225 aa9.94□□□□□ -0.82
VPS53-218ENST00000575207 TMEM127O75204 238 aa9.94□□□□□ -0.82
VPS53-218ENST00000575207 CNBPP62633 177 aaKnown RBP9.94□□□□□ -0.82
VPS53-218ENST00000575207 SAMD12Q8N8I0 201 aa9.94□□□□□ -0.82
VPS53-218ENST00000575207 C14orf166Q9Y224 244 aaKnown RBP9.94□□□□□ -0.82
VPS53-218ENST00000575207 A0A087WX48 190 aa9.93□□□□□ -0.82
VPS53-218ENST00000575207 RPP30P78346 268 aaKnown RBP9.93□□□□□ -0.82
VPS53-218ENST00000575207 TMEM78Q5T7P6 136 aa9.93□□□□□ -0.82
VPS53-218ENST00000575207 CYB561D1Q8N8Q1 229 aa9.93□□□□□ -0.82
Retrieved 100 of 20,778 RNA–protein pairs in 135.7 ms