RNA–Protein interactions for RNA: ENST00000572270.1

CCDC40-208, Transcript of coiled-coil domain containing 40, humanhuman

TSL 4

Gene CCDC40, Length 460 nt, Biotype processed transcript.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC40-208ENST00000572270 RAB3DO95716 219 aa8.41□□□□□ -1.06
CCDC40-208ENST00000572270 APOA1P02647 267 aa8.41□□□□□ -1.06
CCDC40-208ENST00000572270 ERCC8Q13216 396 aa8.41□□□□□ -1.06
CCDC40-208ENST00000572270 C14orf177Q52M58 125 aa8.41□□□□□ -1.06
CCDC40-208ENST00000572270 LINC00305Q7Z4B0 112 aa8.41□□□□□ -1.06
CCDC40-208ENST00000572270 LYZL2Q7Z4W2 148 aa8.41□□□□□ -1.06
CCDC40-208ENST00000572270 RASL10AQ92737 203 aa8.41□□□□□ -1.06
CCDC40-208ENST00000572270 IGKV2D-24A0A075B6R9 120 aa8.4□□□□□ -1.06
CCDC40-208ENST00000572270 TAS2R19P59542 299 aa8.4□□□□□ -1.06
CCDC40-208ENST00000572270 SURF2Q15527 256 aaPredicted RBP8.4□□□□□ -1.06
CCDC40-208ENST00000572270 PATE2Q6UY27 113 aa8.4□□□□□ -1.06
CCDC40-208ENST00000572270 Q8N3U1 123 aa8.4□□□□□ -1.06
CCDC40-208ENST00000572270 OR51S1Q8NGJ8 323 aa8.4□□□□□ -1.06
CCDC40-208ENST00000572270 LINC00477Q96M19 166 aa8.4□□□□□ -1.06
CCDC40-208ENST00000572270 SPXQ9BT56 116 aa8.4□□□□□ -1.06
CCDC40-208ENST00000572270 SRRQ9GZT4 340 aa8.4□□□□□ -1.06
CCDC40-208ENST00000572270 COMMD3Q9UBI1 195 aa8.4□□□□□ -1.06
CCDC40-208ENST00000572270 CRISP2P16562 243 aa8.39□□□□□ -1.07
CCDC40-208ENST00000572270 C4orf46Q504U0 113 aa8.39□□□□□ -1.07
CCDC40-208ENST00000572270 SPANXN5Q5MJ07 72 aa8.39□□□□□ -1.07
CCDC40-208ENST00000572270 PXDC1Q5TGL8 231 aa8.39□□□□□ -1.07
CCDC40-208ENST00000572270 DAZ4Q86SG3 579 aaKnown RBP8.39□□□□□ -1.07
CCDC40-208ENST00000572270 FAM19A4Q96LR4 140 aa8.39□□□□□ -1.07
CCDC40-208ENST00000572270 DAZ3Q9NR90 486 aaKnown RBP8.39□□□□□ -1.07
CCDC40-208ENST00000572270 IGHV3-16A0A0C4DH30 117 aa8.38□□□□□ -1.07
CCDC40-208ENST00000572270 WRBO00258 174 aa8.38□□□□□ -1.07
CCDC40-208ENST00000572270 NMBP08949 121 aa8.38□□□□□ -1.07
CCDC40-208ENST00000572270 IGLC2P0DOY2 106 aa8.38□□□□□ -1.07
CCDC40-208ENST00000572270 TGFBR1P36897 503 aa8.38□□□□□ -1.07
CCDC40-208ENST00000572270 RPS19P39019 145 aaKnown RBP8.38□□□□□ -1.07
CCDC40-208ENST00000572270 GUK1Q16774 197 aa8.38□□□□□ -1.07
CCDC40-208ENST00000572270 VWC2Q2TAL6 325 aa8.38□□□□□ -1.07
CCDC40-208ENST00000572270 TMEM229BQ8NBD8 167 aa8.38□□□□□ -1.07
CCDC40-208ENST00000572270 OR52I2Q8NH67 350 aa8.38□□□□□ -1.07
CCDC40-208ENST00000572270 MRPL53Q96EL3 112 aaKnown RBP8.38□□□□□ -1.07
CCDC40-208ENST00000572270 SAT2Q96F10 170 aaPredicted RBP8.38□□□□□ -1.07
CCDC40-208ENST00000572270 PRADC1Q9BSG0 188 aa8.38□□□□□ -1.07
CCDC40-208ENST00000572270 GTSF1LQ9H1H1 148 aa8.38□□□□□ -1.07
CCDC40-208ENST00000572270 MTFP1Q9UDX5 166 aa8.38□□□□□ -1.07
CCDC40-208ENST00000572270 PIGBOS1A0A0B4J2F0 54 aa8.37□□□□□ -1.07
CCDC40-208ENST00000572270 GATA1P15976 413 aaPredicted RBP8.37□□□□□ -1.07
CCDC40-208ENST00000572270 SRPXP78539 464 aa8.37□□□□□ -1.07
CCDC40-208ENST00000572270 PRR9Q5T870 116 aa8.37□□□□□ -1.07
CCDC40-208ENST00000572270 Q6ZQT7 251 aa8.37□□□□□ -1.07
CCDC40-208ENST00000572270 YIPF6Q96EC8 236 aa8.37□□□□□ -1.07
CCDC40-208ENST00000572270 SH3BGRL3Q9H299 93 aa8.37□□□□□ -1.07
CCDC40-208ENST00000572270 GPR132Q9UNW8 380 aa8.37□□□□□ -1.07
CCDC40-208ENST00000572270 STRAPQ9Y3F4 350 aaKnown RBP8.37□□□□□ -1.07
CCDC40-208ENST00000572270 DISC1C4P0D8 188 aa8.36□□□□□ -1.07
CCDC40-208ENST00000572270 H3BP45 60 aa8.36□□□□□ -1.07
CCDC40-208ENST00000572270 H3BQ15 152 aa8.36□□□□□ -1.07
CCDC40-208ENST00000572270 M0R3E3 92 aa8.36□□□□□ -1.07
CCDC40-208ENST00000572270 SYNGR2O43760 224 aa8.36□□□□□ -1.07
CCDC40-208ENST00000572270 COX7A2P2O60397 106 aa8.36□□□□□ -1.07
CCDC40-208ENST00000572270 PITX3O75364 302 aa8.36□□□□□ -1.07
CCDC40-208ENST00000572270 SEC11BP0C7V7 166 aa8.36□□□□□ -1.07
CCDC40-208ENST00000572270 ANXA3P12429 323 aa8.36□□□□□ -1.07
CCDC40-208ENST00000572270 RHOHQ15669 191 aa8.36□□□□□ -1.07
CCDC40-208ENST00000572270 MUC21Q5SSG8 566 aa8.36□□□□□ -1.07
CCDC40-208ENST00000572270 TMEM78Q5T7P6 136 aa8.36□□□□□ -1.07
CCDC40-208ENST00000572270 FAAP20Q6NZ36 180 aa8.36□□□□□ -1.07
CCDC40-208ENST00000572270 AGPAT4-IT1Q9H0P7 198 aa8.36□□□□□ -1.07
CCDC40-208ENST00000572270 AFDN-AS1Q9Y6Z5 254 aaPredicted RBP8.36□□□□□ -1.07
CCDC40-208ENST00000572270 MUC2Q02817 5179 aa8.35□□□□□ -1.07
CCDC40-208ENST00000572270 TRGV11A0A075B6L2 103 aa8.35□□□□□ -1.07
CCDC40-208ENST00000572270 A0A0J9YXV3 536 aa8.35□□□□□ -1.07
CCDC40-208ENST00000572270 FBLL1A6NHQ2 334 aaKnown RBP8.35□□□□□ -1.07
CCDC40-208ENST00000572270 FAM25AB3EWG3 89 aa8.35□□□□□ -1.07
CCDC40-208ENST00000572270 FAM25CB3EWG5 89 aa8.35□□□□□ -1.07
CCDC40-208ENST00000572270 FAM25GB3EWG6 89 aa8.35□□□□□ -1.07
CCDC40-208ENST00000572270 OR10J4P0C629 311 aa8.35□□□□□ -1.07
CCDC40-208ENST00000572270 ZFAND2AQ8N6M9 145 aa8.35□□□□□ -1.07
CCDC40-208ENST00000572270 SLC25A29Q8N8R3 303 aa8.35□□□□□ -1.07
CCDC40-208ENST00000572270 ZC2HC1AQ96GY0 325 aa8.35□□□□□ -1.07
CCDC40-208ENST00000572270 C2orf50Q96LR7 162 aa8.35□□□□□ -1.07
CCDC40-208ENST00000572270 OR51M1Q9H341 326 aa8.35□□□□□ -1.07
CCDC40-208ENST00000572270 URGCP-MRPS24S4R325 110 aa8.35□□□□□ -1.07
CCDC40-208ENST00000572270 GOSR2O14653 212 aa8.34□□□□□ -1.07
CCDC40-208ENST00000572270 HPGDSO60760 199 aa8.34□□□□□ -1.07
CCDC40-208ENST00000572270 ZNF253O75346 499 aa8.34□□□□□ -1.07
CCDC40-208ENST00000572270 SLC38A11Q08AI6 406 aa8.34□□□□□ -1.07
CCDC40-208ENST00000572270 RAB31Q13636 194 aa8.34□□□□□ -1.07
CCDC40-208ENST00000572270 TMEM183BQ1AE95 376 aa8.34□□□□□ -1.07
CCDC40-208ENST00000572270 ZNF546Q86UE3 836 aa8.34□□□□□ -1.07
CCDC40-208ENST00000572270 TMEM183AQ8IXX5 376 aa8.34□□□□□ -1.07
CCDC40-208ENST00000572270 NRG4Q8WWG1 115 aa8.34□□□□□ -1.07
CCDC40-208ENST00000572270 PRELID1Q9Y255 219 aa8.34□□□□□ -1.07
CCDC40-208ENST00000572270 DUXBA0A1W2PPF3 345 aa8.33□□□□□ -1.08
CCDC40-208ENST00000572270 K7EPK0 472 aa8.33□□□□□ -1.08
CCDC40-208ENST00000572270 M0R2P5 195 aa8.33□□□□□ -1.08
CCDC40-208ENST00000572270 HIST1H1EP10412 219 aaKnown RBP8.33□□□□□ -1.08
CCDC40-208ENST00000572270 RRAS2P62070 204 aaPredicted RBP8.33□□□□□ -1.08
CCDC40-208ENST00000572270 BAK1Q16611 211 aa8.33□□□□□ -1.08
CCDC40-208ENST00000572270 C10orf113Q5VZT2 155 aa8.33□□□□□ -1.08
CCDC40-208ENST00000572270 NPVFQ9HCQ7 196 aa8.33□□□□□ -1.08
CCDC40-208ENST00000572270 TRBV6-4A0A1B0GX49 114 aa8.32□□□□□ -1.08
CCDC40-208ENST00000572270 AGPAT2O15120 278 aa8.32□□□□□ -1.08
CCDC40-208ENST00000572270 SLC25A6P12236 298 aa8.32□□□□□ -1.08
CCDC40-208ENST00000572270 UBE2MP61081 183 aaKnown RBP8.32□□□□□ -1.08
CCDC40-208ENST00000572270 POLR2GP62487 172 aaKnown RBP eCLIP8.32□□□□□ -1.08
Retrieved 100 of 20,778 RNA–protein pairs in 49.6 ms