RNA–Protein interactions for RNA: ENST00000563984.1

VPS35-205, Transcript of VPS35, retromer complex component, humanhuman

TSL 2

Gene VPS35, Length 775 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-205ENST00000563984 CXCL6P80162 114 aa3.79□□□□□ -1.8
VPS35-205ENST00000563984 TMEM170BQ5T4T1 132 aa3.79□□□□□ -1.8
VPS35-205ENST00000563984 FAM219BQ5XKK7 198 aa3.79□□□□□ -1.8
VPS35-205ENST00000563984 MIC13Q5XKP0 118 aa3.79□□□□□ -1.8
VPS35-205ENST00000563984 C12orf73Q69YU5 71 aa3.79□□□□□ -1.8
VPS35-205ENST00000563984 NOXRED1Q6NXP6 359 aa3.79□□□□□ -1.8
VPS35-205ENST00000563984 FP248Q71RG6 208 aaPredicted RBP3.79□□□□□ -1.8
VPS35-205ENST00000563984 C6orf201Q7Z4U5 140 aa3.79□□□□□ -1.8
VPS35-205ENST00000563984 C5orf38Q86SI9 138 aa3.79□□□□□ -1.8
VPS35-205ENST00000563984 C6orf223Q8N319 242 aa3.79□□□□□ -1.8
VPS35-205ENST00000563984 H1FXQ92522 213 aaKnown RBP3.79□□□□□ -1.8
VPS35-205ENST00000563984 ZNF524Q96C55 264 aa3.79□□□□□ -1.8
VPS35-205ENST00000563984 SLC25A22Q9H936 323 aa3.79□□□□□ -1.8
VPS35-205ENST00000563984 V9GY05 133 aa3.79□□□□□ -1.8
VPS35-205ENST00000563984 THSD7AQ9UPZ6 1657 aa3.78□□□□□ -1.8
VPS35-205ENST00000563984 GBF1Q92538 1859 aa3.78□□□□□ -1.8
VPS35-205ENST00000563984 F2Z2F3 143 aa3.78□□□□□ -1.8
VPS35-205ENST00000563984 FXYD1O00168 92 aa3.78□□□□□ -1.8
VPS35-205ENST00000563984 TIMM17BO60830 172 aa3.78□□□□□ -1.8
VPS35-205ENST00000563984 HERVK_113P61574 105 aa3.78□□□□□ -1.8
VPS35-205ENST00000563984 RPL23P62829 140 aaKnown RBP3.78□□□□□ -1.8
VPS35-205ENST00000563984 C6orf99Q4VX62 202 aa3.78□□□□□ -1.8
VPS35-205ENST00000563984 ZNF678Q5SXM1 525 aa3.78□□□□□ -1.8
VPS35-205ENST00000563984 EBLN2Q6P2I7 272 aa3.78□□□□□ -1.8
VPS35-205ENST00000563984 LINC00337Q8N6G1 96 aa3.78□□□□□ -1.8
VPS35-205ENST00000563984 ZNF645Q8N7E2 425 aa3.78□□□□□ -1.8
VPS35-205ENST00000563984 C11orf72Q8NBR9 251 aa3.78□□□□□ -1.8
VPS35-205ENST00000563984 RNF185Q96GF1 192 aa3.78□□□□□ -1.8
VPS35-205ENST00000563984 ABHD14BQ96IU4 210 aa3.78□□□□□ -1.8
VPS35-205ENST00000563984 ODF3Q96PU9 254 aa3.78□□□□□ -1.8
VPS35-205ENST00000563984 UPK3BQ9BT76 320 aa3.78□□□□□ -1.8
VPS35-205ENST00000563984 RNF126Q9BV68 326 aa3.78□□□□□ -1.8
VPS35-205ENST00000563984 CMC2Q9NRP2 79 aa3.78□□□□□ -1.8
VPS35-205ENST00000563984 HILPDAQ9Y5L2 63 aa3.78□□□□□ -1.8
VPS35-205ENST00000563984 SELENOKQ9Y6D0 94 aa3.78□□□□□ -1.8
VPS35-205ENST00000563984 DOCK4Q8N1I0 1966 aa3.78□□□□□ -1.8
VPS35-205ENST00000563984 KIAA1671Q9BY89 1806 aa3.77□□□□□ -1.81
VPS35-205ENST00000563984 HEATR5AQ86XA9 2040 aa3.77□□□□□ -1.81
VPS35-205ENST00000563984 MAST2Q6P0Q8 1798 aa3.77□□□□□ -1.81
VPS35-205ENST00000563984 EXPH5Q8NEV8 1989 aa3.77□□□□□ -1.81
VPS35-205ENST00000563984 C12orf77C9JDV5 145 aa3.77□□□□□ -1.81
VPS35-205ENST00000563984 HCRTO43612 131 aa3.77□□□□□ -1.81
VPS35-205ENST00000563984 CDK2AP2O75956 126 aa3.77□□□□□ -1.81
VPS35-205ENST00000563984 NXPH4O95158 308 aa3.77□□□□□ -1.81
VPS35-205ENST00000563984 CXCL8P10145 99 aa3.77□□□□□ -1.81
VPS35-205ENST00000563984 S100A4P26447 101 aaKnown RBP3.77□□□□□ -1.81
VPS35-205ENST00000563984 DYNLT3P51808 116 aa3.77□□□□□ -1.81
VPS35-205ENST00000563984 ZNF876PQ49A33 203 aa3.77□□□□□ -1.81
VPS35-205ENST00000563984 LCE1FQ5T754 118 aa3.77□□□□□ -1.81
VPS35-205ENST00000563984 NKAPP1Q8N9T2 125 aa3.77□□□□□ -1.81
VPS35-205ENST00000563984 CLDND2Q8NHS1 167 aa3.77□□□□□ -1.81
VPS35-205ENST00000563984 ZNF286AQ9HBT8 521 aa3.77□□□□□ -1.81
VPS35-205ENST00000563984 EPDR1Q9UM22 224 aa3.77□□□□□ -1.81
VPS35-205ENST00000563984 LINC00588Q9Y4M8 146 aa3.77□□□□□ -1.81
VPS35-205ENST00000563984 C2orf16Q68DN1 1984 aa3.76□□□□□ -1.81
VPS35-205ENST00000563984 CASP8AP2Q9UKL3 1982 aa3.76□□□□□ -1.81
VPS35-205ENST00000563984 TRAV16A0A0A6YYK6 109 aaPredicted RBP3.76□□□□□ -1.81
VPS35-205ENST00000563984 EPOPA6NHQ4 379 aa3.76□□□□□ -1.81
VPS35-205ENST00000563984 SMIM1B2RUZ4 78 aa3.76□□□□□ -1.81
VPS35-205ENST00000563984 CCL16O15467 120 aa3.76□□□□□ -1.81
VPS35-205ENST00000563984 FSTL3O95633 263 aa3.76□□□□□ -1.81
VPS35-205ENST00000563984 C1QAP02745 245 aa3.76□□□□□ -1.81
VPS35-205ENST00000563984 ZNF883P0CG24 379 aa3.76□□□□□ -1.81
VPS35-205ENST00000563984 AQP1P29972 269 aa3.76□□□□□ -1.81
VPS35-205ENST00000563984 NCBP2P52298 156 aaKnown RBP eCLIP3.76□□□□□ -1.81
VPS35-205ENST00000563984 CAV3P56539 151 aa3.76□□□□□ -1.81
VPS35-205ENST00000563984 SYNJ2BPP57105 145 aa3.76□□□□□ -1.81
VPS35-205ENST00000563984 SMIM11AP58511 58 aa3.76□□□□□ -1.81
VPS35-205ENST00000563984 LINC00313P59037 77 aa3.76□□□□□ -1.81
VPS35-205ENST00000563984 HIST1H4AP62805 103 aaKnown RBP3.76□□□□□ -1.81
VPS35-205ENST00000563984 ZNF816Q0VGE8 651 aaPredicted RBP3.76□□□□□ -1.81
VPS35-205ENST00000563984 RSPO1Q2MKA7 263 aaPredicted RBP3.76□□□□□ -1.81
VPS35-205ENST00000563984 FBXL19-AS1Q494R0 122 aa3.76□□□□□ -1.81
VPS35-205ENST00000563984 CLLU1OSQ5K130 101 aa3.76□□□□□ -1.81
VPS35-205ENST00000563984 LINC00643Q86TS7 51 aa3.76□□□□□ -1.81
VPS35-205ENST00000563984 TMEM252Q8N6L7 170 aa3.76□□□□□ -1.81
VPS35-205ENST00000563984 LITAFQ99732 161 aa3.76□□□□□ -1.81
VPS35-205ENST00000563984 SMIM7Q9BQ49 75 aa3.76□□□□□ -1.81
VPS35-205ENST00000563984 TMEM243Q9BU79 118 aa3.76□□□□□ -1.81
VPS35-205ENST00000563984 TP73-AS1Q9UF72 201 aa3.76□□□□□ -1.81
VPS35-205ENST00000563984 SLC25A15Q9Y619 301 aa3.76□□□□□ -1.81
VPS35-205ENST00000563984 NYNRINQ9P2P1 1898 aaKnown RBP3.75□□□□□ -1.81
VPS35-205ENST00000563984 COL1A1P02452 1464 aaPredicted RBP3.75□□□□□ -1.81
VPS35-205ENST00000563984 IGHV6-1A0A0B4J1U7 121 aa3.75□□□□□ -1.81
VPS35-205ENST00000563984 IGKV1D-43A0A0B4J1Z2 117 aa3.75□□□□□ -1.81
VPS35-205ENST00000563984 TRAV1-2A0A0B4J238 106 aa3.75□□□□□ -1.81
VPS35-205ENST00000563984 A0A0J9YXV3 536 aa3.75□□□□□ -1.81
VPS35-205ENST00000563984 C2orf70A6NJV1 201 aa3.75□□□□□ -1.81
VPS35-205ENST00000563984 K7ERJ3 54 aa3.75□□□□□ -1.81
VPS35-205ENST00000563984 CPSF4O95639 269 aaKnown RBP3.75□□□□□ -1.81
VPS35-205ENST00000563984 FCGR2CP31995 323 aa3.75□□□□□ -1.81
VPS35-205ENST00000563984 MFAP2P55001 183 aa3.75□□□□□ -1.81
VPS35-205ENST00000563984 DSCR4P56555 118 aaPredicted RBP3.75□□□□□ -1.81
VPS35-205ENST00000563984 LMO4P61968 165 aa3.75□□□□□ -1.81
VPS35-205ENST00000563984 KIAA0087Q14695 138 aa3.75□□□□□ -1.81
VPS35-205ENST00000563984 MLF2Q15773 248 aaPredicted RBP3.75□□□□□ -1.81
VPS35-205ENST00000563984 NCBP2-AS2Q69YL0 99 aa3.75□□□□□ -1.81
VPS35-205ENST00000563984 Q6P435 159 aa3.75□□□□□ -1.81
VPS35-205ENST00000563984 C7orf65Q6ZTY9 151 aa3.75□□□□□ -1.81
VPS35-205ENST00000563984 PRNTQ86SH4 94 aa3.75□□□□□ -1.81
Retrieved 100 of 20,778 RNA–protein pairs in 30.8 ms