RNA–Protein interactions for RNA: ENST00000559711.5

USP3-213, Transcript of ubiquitin specific peptidase 3, humanhuman

TSL 5 BASIC

Gene USP3, Length 1,693 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP3-213ENST00000559711 C5orf52A6NGY3 159 aa9.61□□□□□ -0.87
USP3-213ENST00000559711 LINC01619G3V211 115 aa9.61□□□□□ -0.87
USP3-213ENST00000559711 TCL1AP56279 114 aa9.61□□□□□ -0.87
USP3-213ENST00000559711 TCF24Q7RTU0 167 aa9.61□□□□□ -0.87
USP3-213ENST00000559711 LINC01006Q8NI28 216 aa9.61□□□□□ -0.87
USP3-213ENST00000559711 C20orf173Q96LM9 149 aa9.61□□□□□ -0.87
USP3-213ENST00000559711 JMJD8Q96S16 334 aa9.61□□□□□ -0.87
USP3-213ENST00000559711 NAT8BQ9UHF3 227 aa9.61□□□□□ -0.87
USP3-213ENST00000559711 S100A6P06703 90 aa9.6□□□□□ -0.87
USP3-213ENST00000559711 TRGC1P0CF51 173 aa9.6□□□□□ -0.87
USP3-213ENST00000559711 CT45A10P0DMU9 189 aa9.6□□□□□ -0.87
USP3-213ENST00000559711 RPL11P62913 178 aaKnown RBP9.6□□□□□ -0.87
USP3-213ENST00000559711 ERCC8Q13216 396 aa9.6□□□□□ -0.87
USP3-213ENST00000559711 SAMD13Q5VXD3 122 aa9.6□□□□□ -0.87
USP3-213ENST00000559711 C9orf47Q6ZRZ4 202 aa9.6□□□□□ -0.87
USP3-213ENST00000559711 NUP35Q8NFH5 326 aa9.6□□□□□ -0.87
USP3-213ENST00000559711 NEU1Q99519 415 aa9.6□□□□□ -0.87
USP3-213ENST00000559711 GFRA4Q9GZZ7 299 aa9.6□□□□□ -0.87
USP3-213ENST00000559711 AGPAT4-IT1Q9H0P7 198 aa9.6□□□□□ -0.87
USP3-213ENST00000559711 NDUFA7O95182 113 aa9.59□□□□□ -0.87
USP3-213ENST00000559711 SNRPEP62304 92 aaKnown RBP9.59□□□□□ -0.87
USP3-213ENST00000559711 COX19Q49B96 90 aa9.59□□□□□ -0.87
USP3-213ENST00000559711 OR11H1Q8NG94 326 aa9.59□□□□□ -0.87
USP3-213ENST00000559711 OR1N2Q8NGR9 330 aa9.59□□□□□ -0.87
USP3-213ENST00000559711 Q8TAT8 98 aa9.59□□□□□ -0.87
USP3-213ENST00000559711 GNB1LQ9BYB4 327 aa9.59□□□□□ -0.87
USP3-213ENST00000559711 GPR61Q9BZJ8 451 aa9.59□□□□□ -0.87
USP3-213ENST00000559711 TRAPPC1Q9Y5R8 145 aa9.59□□□□□ -0.87
USP3-213ENST00000559711 C2orf70A6NJV1 201 aa9.58□□□□□ -0.88
USP3-213ENST00000559711 HIGD1CA8MV81 97 aa9.58□□□□□ -0.88
USP3-213ENST00000559711 OVOL1O14753 267 aa9.58□□□□□ -0.88
USP3-213ENST00000559711 CBLN1P23435 193 aa9.58□□□□□ -0.88
USP3-213ENST00000559711 ZNF138P52744 262 aa9.58□□□□□ -0.88
USP3-213ENST00000559711 FOXA3P55318 350 aaPredicted RBP9.58□□□□□ -0.88
USP3-213ENST00000559711 FABP9Q0Z7S8 132 aa9.58□□□□□ -0.88
USP3-213ENST00000559711 DEFB136Q30KP8 78 aa9.58□□□□□ -0.88
USP3-213ENST00000559711 SMUG1Q53HV7 270 aa9.58□□□□□ -0.88
USP3-213ENST00000559711 FAM162BQ5T6X4 162 aa9.58□□□□□ -0.88
USP3-213ENST00000559711 RASL11AQ6T310 242 aa9.58□□□□□ -0.88
USP3-213ENST00000559711 OR2D3Q8NGH3 330 aa9.58□□□□□ -0.88
USP3-213ENST00000559711 DCANP1Q8TF63 244 aa9.58□□□□□ -0.88
USP3-213ENST00000559711 GTSF1Q8WW33 167 aa9.58□□□□□ -0.88
USP3-213ENST00000559711 NDFIP1Q9BT67 221 aa9.58□□□□□ -0.88
USP3-213ENST00000559711 FRMD6-AS1P0C7T7 363 aa9.58□□□□□ -0.88
USP3-213ENST00000559711 SLURP1P55000 103 aa9.58□□□□□ -0.88
USP3-213ENST00000559711 TMEM78Q5T7P6 136 aa9.58□□□□□ -0.88
USP3-213ENST00000559711 ZNF738Q8NE65 137 aa9.58□□□□□ -0.88
USP3-213ENST00000559711 KLHL30-AS1Q8NEE0 82 aa9.58□□□□□ -0.88
USP3-213ENST00000559711 DPF1Q92782 380 aa9.58□□□□□ -0.88
USP3-213ENST00000559711 SPINK4O60575 86 aa9.57□□□□□ -0.88
USP3-213ENST00000559711 SH2D1AO60880 128 aa9.57□□□□□ -0.88
USP3-213ENST00000559711 ID1P41134 155 aa9.57□□□□□ -0.88
USP3-213ENST00000559711 KHDC1LQ5JSQ8 128 aa9.57□□□□□ -0.88
USP3-213ENST00000559711 WDR73Q6P4I2 378 aa9.57□□□□□ -0.88
USP3-213ENST00000559711 ADAMTSL5Q6ZMM2 481 aa9.57□□□□□ -0.88
USP3-213ENST00000559711 ATP5L2Q7Z4Y8 100 aa9.57□□□□□ -0.88
USP3-213ENST00000559711 LINC00477Q96M19 166 aa9.57□□□□□ -0.88
USP3-213ENST00000559711 SAV1Q9H4B6 383 aaPredicted RBP9.57□□□□□ -0.88
USP3-213ENST00000559711 LENEPQ9Y5L5 61 aa9.57□□□□□ -0.88
USP3-213ENST00000559711 HIVEP1P15822 2718 aa9.57□□□□□ -0.88
USP3-213ENST00000559711 IGKV3-7A0A075B6H7 116 aa9.56□□□□□ -0.88
USP3-213ENST00000559711 INAFM1C9JVW0 142 aa9.56□□□□□ -0.88
USP3-213ENST00000559711 UBE2CO00762 179 aa9.56□□□□□ -0.88
USP3-213ENST00000559711 MT-ND6P03923 174 aa9.56□□□□□ -0.88
USP3-213ENST00000559711 CD28P10747 220 aa9.56□□□□□ -0.88
USP3-213ENST00000559711 ZNF80P51504 273 aaPredicted RBP9.56□□□□□ -0.88
USP3-213ENST00000559711 SRSF2Q01130 221 aaKnown RBP9.56□□□□□ -0.88
USP3-213ENST00000559711 MRPL54Q6P161 138 aaKnown RBP9.56□□□□□ -0.88
USP3-213ENST00000559711 TMEM136Q6ZRR5 245 aa9.56□□□□□ -0.88
USP3-213ENST00000559711 RBPMS2Q6ZRY4 209 aaKnown RBP9.56□□□□□ -0.88
USP3-213ENST00000559711 MS4A6AQ9H2W1 248 aa9.56□□□□□ -0.88
USP3-213ENST00000559711 FLNBO75369 2602 aaKnown RBP9.56□□□□□ -0.88
USP3-213ENST00000559711 A0A1B0GXF2 115 aa9.55□□□□□ -0.88
USP3-213ENST00000559711 FABP5P3A8MUU1 101 aa9.55□□□□□ -0.88
USP3-213ENST00000559711 SNURFLB1AK76 121 aa9.55□□□□□ -0.88
USP3-213ENST00000559711 M0QZ24 198 aa9.55□□□□□ -0.88
USP3-213ENST00000559711 HOXA5P20719 270 aa9.55□□□□□ -0.88
USP3-213ENST00000559711 NDUFA6P56556 154 aa9.55□□□□□ -0.88
USP3-213ENST00000559711 OR9G4Q8NGQ1 327 aa9.55□□□□□ -0.88
USP3-213ENST00000559711 OR10J6PQ8NGY7 276 aa9.55□□□□□ -0.88
USP3-213ENST00000559711 PEMTQ9UBM1 199 aa9.55□□□□□ -0.88
USP3-213ENST00000559711 CUBNO60494 3623 aa9.55□□□□□ -0.88
USP3-213ENST00000559711 K7EQG2 157 aa9.55□□□□□ -0.88
USP3-213ENST00000559711 GZMBP10144 247 aa9.55□□□□□ -0.88
USP3-213ENST00000559711 FHL3Q13643 280 aa9.55□□□□□ -0.88
USP3-213ENST00000559711 OR8A1Q8NGG7 326 aa9.55□□□□□ -0.88
USP3-213ENST00000559711 DLX4Q92988 240 aaPredicted RBP9.55□□□□□ -0.88
USP3-213ENST00000559711 DUX3Q96PT4 197 aa9.55□□□□□ -0.88
USP3-213ENST00000559711 MRPL18Q9H0U6 180 aaKnown RBP9.55□□□□□ -0.88
USP3-213ENST00000559711 TSSC4Q9Y5U2 329 aaPredicted RBP9.55□□□□□ -0.88
USP3-213ENST00000559711 SELENOKQ9Y6D0 94 aa9.55□□□□□ -0.88
USP3-213ENST00000559711 TRBV7-9A0A0J9YWB2 115 aa9.54□□□□□ -0.88
USP3-213ENST00000559711 XKRY2A2RUG3 117 aa9.54□□□□□ -0.88
USP3-213ENST00000559711 TMEM189A5PLL7 270 aa9.54□□□□□ -0.88
USP3-213ENST00000559711 HLA-DQA1P01909 254 aa9.54□□□□□ -0.88
USP3-213ENST00000559711 PROK1P58294 105 aa9.54□□□□□ -0.88
USP3-213ENST00000559711 COA6Q5JTJ3 125 aaKnown RBP9.54□□□□□ -0.88
USP3-213ENST00000559711 Q6AWC8 147 aa9.54□□□□□ -0.88
USP3-213ENST00000559711 RAX2Q96IS3 184 aa9.54□□□□□ -0.88
USP3-213ENST00000559711 PGLYRP4Q96LB8 373 aa9.54□□□□□ -0.88
Retrieved 100 of 20,778 RNA–protein pairs in 36.7 ms