RNA–Protein interactions for RNA: ENST00000557433.5

SHMT2-231, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 1 (best)

Gene SHMT2, Length 1,904 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-231ENST00000557433 SAMD5Q5TGI4 173 aa12.63□□□□□ -0.39
SHMT2-231ENST00000557433 MRPL53Q96EL3 112 aaKnown RBP12.63□□□□□ -0.39
SHMT2-231ENST00000557433 HIF1ANQ9NWT6 349 aa12.63□□□□□ -0.39
SHMT2-231ENST00000557433 DSPP15924 2871 aaKnown RBP12.63□□□□□ -0.39
SHMT2-231ENST00000557433 PRSS1P07477 247 aa12.62□□□□□ -0.39
SHMT2-231ENST00000557433 FXYD7P58549 80 aa12.62□□□□□ -0.39
SHMT2-231ENST00000557433 SAP30O75446 220 aa12.62□□□□□ -0.39
SHMT2-231ENST00000557433 FBXL19-AS1Q494R0 122 aa12.62□□□□□ -0.39
SHMT2-231ENST00000557433 CHAC1Q9BUX1 264 aa12.62□□□□□ -0.39
SHMT2-231ENST00000557433 TM2D2Q9BX73 214 aa12.62□□□□□ -0.39
SHMT2-231ENST00000557433 MUC3AQ02505 3323 aa12.61□□□□□ -0.39
SHMT2-231ENST00000557433 BDP1A6H8Y1 2624 aa12.61□□□□□ -0.39
SHMT2-231ENST00000557433 NDPQ00604 133 aa12.61□□□□□ -0.39
SHMT2-231ENST00000557433 ABCA1O95477 2261 aa12.61□□□□□ -0.39
SHMT2-231ENST00000557433 IL17RELQ6ZVW7 336 aa12.6□□□□□ -0.39
SHMT2-231ENST00000557433 RAB37Q96AX2 223 aa12.6□□□□□ -0.39
SHMT2-231ENST00000557433 C18orf15Q96N68 181 aa12.6□□□□□ -0.39
SHMT2-231ENST00000557433 IGLV2-18A0A075B6J9 118 aa12.6□□□□□ -0.39
SHMT2-231ENST00000557433 NCBP2LA6PVI3 153 aaKnown RBP12.6□□□□□ -0.39
SHMT2-231ENST00000557433 GCSHP23434 173 aa12.6□□□□□ -0.39
SHMT2-231ENST00000557433 DTX2Q86UW9 622 aa12.6□□□□□ -0.39
SHMT2-231ENST00000557433 DYNAPQ8N1N2 210 aa12.6□□□□□ -0.39
SHMT2-231ENST00000557433 FAM110DQ8TAY7 271 aaPredicted RBP12.6□□□□□ -0.39
SHMT2-231ENST00000557433 MSRB1Q9NZV6 116 aa12.6□□□□□ -0.39
SHMT2-231ENST00000557433 OTOGLQ3ZCN5 2332 aa12.6□□□□□ -0.39
SHMT2-231ENST00000557433 IGHV4-4A0A075B6R2 117 aa12.59□□□□□ -0.39
SHMT2-231ENST00000557433 GOSR1O95249 250 aa12.59□□□□□ -0.39
SHMT2-231ENST00000557433 VMO1Q7Z5L0 202 aa12.59□□□□□ -0.39
SHMT2-231ENST00000557433 MYOZ3Q8TDC0 251 aa12.59□□□□□ -0.39
SHMT2-231ENST00000557433 TMEM158Q8WZ71 300 aa12.59□□□□□ -0.39
SHMT2-231ENST00000557433 BUB3O43684 328 aa12.58□□□□□ -0.39
SHMT2-231ENST00000557433 PRB4P10163 310 aaPredicted RBP12.58□□□□□ -0.39
SHMT2-231ENST00000557433 ZNF502Q8TBZ5 544 aa12.58□□□□□ -0.39
SHMT2-231ENST00000557433 FOXC2Q99958 501 aa12.58□□□□□ -0.39
SHMT2-231ENST00000557433 TRBV25-1A0A075B6N4 114 aa12.58□□□□□ -0.4
SHMT2-231ENST00000557433 TMEM11P17152 192 aa12.58□□□□□ -0.4
SHMT2-231ENST00000557433 LAGE3Q14657 143 aa12.58□□□□□ -0.4
SHMT2-231ENST00000557433 CEND1Q8N111 149 aa12.58□□□□□ -0.4
SHMT2-231ENST00000557433 IGKV2D-26A0A0A0MRZ7 120 aa12.57□□□□□ -0.4
SHMT2-231ENST00000557433 IGHV7-81A0A0B4J1V7 117 aa12.57□□□□□ -0.4
SHMT2-231ENST00000557433 LINC01619G3V211 115 aa12.57□□□□□ -0.4
SHMT2-231ENST00000557433 PLNP26678 52 aa12.57□□□□□ -0.4
SHMT2-231ENST00000557433 FXYD2P54710 66 aa12.57□□□□□ -0.4
SHMT2-231ENST00000557433 KLRD1Q13241 179 aa12.57□□□□□ -0.4
SHMT2-231ENST00000557433 UNQ5830/PRO19650/PRO19816Q6UY13 95 aa12.57□□□□□ -0.4
SHMT2-231ENST00000557433 WFDC3Q8IUB2 231 aa12.57□□□□□ -0.4
SHMT2-231ENST00000557433 ZFAND3Q9H8U3 227 aa12.57□□□□□ -0.4
SHMT2-231ENST00000557433 ROS1P08922 2347 aa12.57□□□□□ -0.4
SHMT2-231ENST00000557433 PKDREJQ9NTG1 2253 aa12.57□□□□□ -0.4
SHMT2-231ENST00000557433 IGHV3-23P01764 117 aa12.56□□□□□ -0.4
SHMT2-231ENST00000557433 HLA-DMBP28068 263 aa12.56□□□□□ -0.4
SHMT2-231ENST00000557433 ZC2HC1BQ5TFG8 222 aa12.56□□□□□ -0.4
SHMT2-231ENST00000557433 PHLDA1Q8WV24 401 aaPredicted RBP12.56□□□□□ -0.4
SHMT2-231ENST00000557433 A0A087WX48 190 aa12.56□□□□□ -0.4
SHMT2-231ENST00000557433 TMEM8BA6NDV4 472 aa12.56□□□□□ -0.4
SHMT2-231ENST00000557433 TCTAP57738 103 aa12.56□□□□□ -0.4
SHMT2-231ENST00000557433 ERCC8Q13216 396 aa12.56□□□□□ -0.4
SHMT2-231ENST00000557433 TMEM78Q5T7P6 136 aa12.56□□□□□ -0.4
SHMT2-231ENST00000557433 LINC01560Q8TB33 94 aa12.56□□□□□ -0.4
SHMT2-231ENST00000557433 MRAP2Q96G30 205 aa12.56□□□□□ -0.4
SHMT2-231ENST00000557433 NAA38Q9BRA0 125 aaKnown RBP12.56□□□□□ -0.4
SHMT2-231ENST00000557433 TRAV12-1A0A0B4J245 112 aa12.55□□□□□ -0.4
SHMT2-231ENST00000557433 IGKV3D-20A0A0C4DH25 116 aa12.55□□□□□ -0.4
SHMT2-231ENST00000557433 A0A1W2PRD5 423 aa12.55□□□□□ -0.4
SHMT2-231ENST00000557433 A0A1W2PRF3 423 aa12.55□□□□□ -0.4
SHMT2-231ENST00000557433 A0A1W2PRM7 423 aa12.55□□□□□ -0.4
SHMT2-231ENST00000557433 K7EMI3 77 aa12.55□□□□□ -0.4
SHMT2-231ENST00000557433 ATP6V0BQ99437 205 aa12.55□□□□□ -0.4
SHMT2-231ENST00000557433 WDFY4Q6ZS81 3184 aa12.55□□□□□ -0.4
SHMT2-231ENST00000557433 E9PLD3 99 aa12.54□□□□□ -0.4
SHMT2-231ENST00000557433 ZNF207O43670 478 aaKnown RBP12.54□□□□□ -0.4
SHMT2-231ENST00000557433 IGFL4Q6B9Z1 124 aa12.54□□□□□ -0.4
SHMT2-231ENST00000557433 C9orf47Q6ZRZ4 202 aa12.54□□□□□ -0.4
SHMT2-231ENST00000557433 GTSCR1Q86UQ5 136 aa12.54□□□□□ -0.4
SHMT2-231ENST00000557433 NRACQ8N912 160 aa12.54□□□□□ -0.4
SHMT2-231ENST00000557433 Q8N9W7 124 aa12.54□□□□□ -0.4
SHMT2-231ENST00000557433 LENEPQ9Y5L5 61 aa12.54□□□□□ -0.4
SHMT2-231ENST00000557433 RP1L1Q8IWN7 2480 aaPredicted RBP12.54□□□□□ -0.4
SHMT2-231ENST00000557433 PRAC2D3DTV9 90 aa12.54□□□□□ -0.4
SHMT2-231ENST00000557433 F8W1H4 67 aa12.54□□□□□ -0.4
SHMT2-231ENST00000557433 RIPPLY3P57055 190 aa12.54□□□□□ -0.4
SHMT2-231ENST00000557433 C15orf32Q32M92 178 aa12.54□□□□□ -0.4
SHMT2-231ENST00000557433 AGPAT4-IT1Q9H0P7 198 aa12.54□□□□□ -0.4
SHMT2-231ENST00000557433 TMEM238C9JI98 176 aa12.53□□□□□ -0.4
SHMT2-231ENST00000557433 GAS8-AS1O95177 125 aa12.53□□□□□ -0.4
SHMT2-231ENST00000557433 SLC25A16P16260 332 aa12.53□□□□□ -0.4
SHMT2-231ENST00000557433 IGHV7-4-1A0A0J9YVY3 117 aa12.52□□□□□ -0.4
SHMT2-231ENST00000557433 J3QR89 54 aa12.52□□□□□ -0.4
SHMT2-231ENST00000557433 METTL26Q96S19 204 aa12.52□□□□□ -0.4
SHMT2-231ENST00000557433 MRPL35Q9NZE8 188 aaKnown RBP12.52□□□□□ -0.4
SHMT2-231ENST00000557433 MSRB2Q9Y3D2 182 aa12.52□□□□□ -0.4
SHMT2-231ENST00000557433 CACNA1HO95180 2353 aa12.52□□□□□ -0.4
SHMT2-231ENST00000557433 TRBV7-1A0A0A6YYK4 115 aa12.52□□□□□ -0.41
SHMT2-231ENST00000557433 SCGB1A1P11684 91 aa12.52□□□□□ -0.41
SHMT2-231ENST00000557433 TM4SF20Q53R12 229 aa12.52□□□□□ -0.41
SHMT2-231ENST00000557433 EEF1AKMT3Q96AZ1 226 aa12.52□□□□□ -0.41
SHMT2-231ENST00000557433 TMEM160Q9NX00 188 aa12.52□□□□□ -0.41
SHMT2-231ENST00000557433 TRAV40A0A0B4J280 105 aa12.51□□□□□ -0.41
SHMT2-231ENST00000557433 BORCS8-MEF2BH3BNR1 382 aaPredicted RBP12.51□□□□□ -0.41
SHMT2-231ENST00000557433 CLEC3BP05452 202 aa12.51□□□□□ -0.41
Retrieved 100 of 20,778 RNA–protein pairs in 66.4 ms