RNA–Protein interactions for RNA: ENST00000557348.5

SHMT2-229, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 2

Gene SHMT2, Length 1,659 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-229ENST00000557348 NAV2Q8IVL1 2488 aa9.83□□□□□ -0.84
SHMT2-229ENST00000557348 MAST4O15021 2626 aa9.83□□□□□ -0.84
SHMT2-229ENST00000557348 A0A1B0GW15 77 aa9.83□□□□□ -0.84
SHMT2-229ENST00000557348 TMEM89A2RUT3 159 aa9.83□□□□□ -0.84
SHMT2-229ENST00000557348 FBLL1A6NHQ2 334 aaKnown RBP9.83□□□□□ -0.84
SHMT2-229ENST00000557348 CYSRT1A8MQ03 144 aa9.83□□□□□ -0.84
SHMT2-229ENST00000557348 A8MWL6 223 aa9.83□□□□□ -0.84
SHMT2-229ENST00000557348 SIVA1O15304 175 aa9.83□□□□□ -0.84
SHMT2-229ENST00000557348 GPR183P32249 361 aa9.83□□□□□ -0.84
SHMT2-229ENST00000557348 HBBP68871 147 aa9.83□□□□□ -0.84
SHMT2-229ENST00000557348 SLAQ13239 276 aa9.83□□□□□ -0.84
SHMT2-229ENST00000557348 Q96MF0 132 aa9.83□□□□□ -0.84
SHMT2-229ENST00000557348 RNASE7Q9H1E1 156 aaKnown RBP9.83□□□□□ -0.84
SHMT2-229ENST00000557348 AAMDCQ9H7C9 122 aa9.83□□□□□ -0.84
SHMT2-229ENST00000557348 A0A0G2JLM5 398 aa9.82□□□□□ -0.84
SHMT2-229ENST00000557348 TRBV6-1A0A0K0K1D8 114 aa9.82□□□□□ -0.84
SHMT2-229ENST00000557348 LEPROTL1O95214 131 aa9.82□□□□□ -0.84
SHMT2-229ENST00000557348 TRGV3P03979 118 aa9.82□□□□□ -0.84
SHMT2-229ENST00000557348 KIAA1644Q3SXP7 199 aa9.82□□□□□ -0.84
SHMT2-229ENST00000557348 FAM19A2Q8N3H0 131 aa9.82□□□□□ -0.84
SHMT2-229ENST00000557348 NUP35Q8NFH5 326 aa9.82□□□□□ -0.84
SHMT2-229ENST00000557348 OR1N2Q8NGR9 330 aa9.82□□□□□ -0.84
SHMT2-229ENST00000557348 SCRT2Q9NQ03 307 aa9.82□□□□□ -0.84
SHMT2-229ENST00000557348 SERTAD4Q9NUC0 356 aa9.82□□□□□ -0.84
SHMT2-229ENST00000557348 S4R3C0 116 aa9.82□□□□□ -0.84
SHMT2-229ENST00000557348 MED13LQ71F56 2210 aa9.82□□□□□ -0.84
SHMT2-229ENST00000557348 SPG11Q96JI7 2443 aa9.82□□□□□ -0.84
SHMT2-229ENST00000557348 TRAV34A0A0B4J273 112 aa9.81□□□□□ -0.84
SHMT2-229ENST00000557348 GAGE12BA1L429 117 aa9.81□□□□□ -0.84
SHMT2-229ENST00000557348 A6NDN8 102 aa9.81□□□□□ -0.84
SHMT2-229ENST00000557348 TCRAP04437 139 aa9.81□□□□□ -0.84
SHMT2-229ENST00000557348 CLEC3BP05452 202 aa9.81□□□□□ -0.84
SHMT2-229ENST00000557348 DEFB112Q30KQ8 113 aa9.81□□□□□ -0.84
SHMT2-229ENST00000557348 OR5A1Q8NGJ0 315 aa9.81□□□□□ -0.84
SHMT2-229ENST00000557348 CCDC140Q96MF4 163 aa9.81□□□□□ -0.84
SHMT2-229ENST00000557348 DCHS2Q6V1P9 2916 aa9.81□□□□□ -0.84
SHMT2-229ENST00000557348 MRPS12O15235 138 aaKnown RBP9.8□□□□□ -0.84
SHMT2-229ENST00000557348 NUDT3O95989 172 aa9.8□□□□□ -0.84
SHMT2-229ENST00000557348 MGST1P10620 155 aaKnown RBP9.8□□□□□ -0.84
SHMT2-229ENST00000557348 PPIFP30405 207 aaKnown RBP9.8□□□□□ -0.84
SHMT2-229ENST00000557348 CSN1S1P47710 185 aa9.8□□□□□ -0.84
SHMT2-229ENST00000557348 MPV17L2Q567V2 206 aa9.8□□□□□ -0.84
SHMT2-229ENST00000557348 RNASEKQ6P5S7 137 aaKnown RBP9.8□□□□□ -0.84
SHMT2-229ENST00000557348 NUDT11Q96G61 164 aa9.8□□□□□ -0.84
SHMT2-229ENST00000557348 VPREB3Q9UKI3 123 aa9.8□□□□□ -0.84
SHMT2-229ENST00000557348 PRPF8Q6P2Q9 2335 aaKnown RBP eCLIP9.8□□□□□ -0.842e-7■■■■□ 26
SHMT2-229ENST00000557348 LINC01548A6NM66 108 aa9.8□□□□□ -0.84
SHMT2-229ENST00000557348 H3BRM9 83 aa9.8□□□□□ -0.84
SHMT2-229ENST00000557348 IGHV3-23P01764 117 aa9.8□□□□□ -0.84
SHMT2-229ENST00000557348 COX8AP10176 69 aa9.8□□□□□ -0.84
SHMT2-229ENST00000557348 RNF151Q2KHN1 245 aa9.8□□□□□ -0.84
SHMT2-229ENST00000557348 CLEC19AQ6UXS0 136 aa9.8□□□□□ -0.84
SHMT2-229ENST00000557348 GATD1Q8NB37 220 aa9.8□□□□□ -0.84
SHMT2-229ENST00000557348 ZNF414Q96IQ9 312 aa9.8□□□□□ -0.84
SHMT2-229ENST00000557348 METTL26Q96S19 204 aa9.8□□□□□ -0.84
SHMT2-229ENST00000557348 ZFAND3Q9H8U3 227 aa9.8□□□□□ -0.84
SHMT2-229ENST00000557348 NBPF19A0A087WUL8 3843 aa9.79□□□□□ -0.84
SHMT2-229ENST00000557348 UNC79Q9P2D8 2635 aa9.79□□□□□ -0.84
SHMT2-229ENST00000557348 A0A087X0K7 114 aa9.79□□□□□ -0.84
SHMT2-229ENST00000557348 CBY3A6NI87 242 aa9.79□□□□□ -0.84
SHMT2-229ENST00000557348 SH2D7A6NKC9 451 aaPredicted RBP9.79□□□□□ -0.84
SHMT2-229ENST00000557348 FRMD6-AS1P0C7T7 363 aa9.79□□□□□ -0.84
SHMT2-229ENST00000557348 LINC01545Q5VT33 79 aa9.79□□□□□ -0.84
SHMT2-229ENST00000557348 Q6YL49 198 aa9.79□□□□□ -0.84
SHMT2-229ENST00000557348 SIGLEC15Q6ZMC9 328 aa9.79□□□□□ -0.84
SHMT2-229ENST00000557348 TMEM75Q8N9X5 138 aa9.79□□□□□ -0.84
SHMT2-229ENST00000557348 PRSS22Q9GZN4 317 aa9.79□□□□□ -0.84
SHMT2-229ENST00000557348 CLEC5AQ9NY25 188 aa9.79□□□□□ -0.84
SHMT2-229ENST00000557348 LTAP01374 205 aa9.78□□□□□ -0.84
SHMT2-229ENST00000557348 IGLV1-40P01703 118 aa9.78□□□□□ -0.84
SHMT2-229ENST00000557348 LCN12Q6JVE5 192 aa9.78□□□□□ -0.84
SHMT2-229ENST00000557348 KRTAP1-3Q8IUG1 177 aa9.78□□□□□ -0.84
SHMT2-229ENST00000557348 OR9G4Q8NGQ1 327 aa9.78□□□□□ -0.84
SHMT2-229ENST00000557348 AP1S3Q96PC3 154 aa9.78□□□□□ -0.84
SHMT2-229ENST00000557348 CENPEQ02224 2701 aa9.78□□□□□ -0.84
SHMT2-229ENST00000557348 RBM14-RBM4A0A0A0MSL8 147 aaKnown RBP9.77□□□□□ -0.84
SHMT2-229ENST00000557348 GAGE10A6NGK3 116 aa9.77□□□□□ -0.84
SHMT2-229ENST00000557348 HIGD1CA8MV81 97 aa9.77□□□□□ -0.84
SHMT2-229ENST00000557348 TMEM238C9JI98 176 aa9.77□□□□□ -0.84
SHMT2-229ENST00000557348 NDUFA4O00483 81 aa9.77□□□□□ -0.84
SHMT2-229ENST00000557348 IGHV4-59P01825 116 aa9.77□□□□□ -0.84
SHMT2-229ENST00000557348 ARL3P36405 182 aa9.77□□□□□ -0.84
SHMT2-229ENST00000557348 FOXA3P55318 350 aaPredicted RBP9.77□□□□□ -0.84
SHMT2-229ENST00000557348 TCL1AP56279 114 aa9.77□□□□□ -0.84
SHMT2-229ENST00000557348 CFHR3Q02985 330 aa9.77□□□□□ -0.84
SHMT2-229ENST00000557348 PSG3Q16557 428 aa9.77□□□□□ -0.84
SHMT2-229ENST00000557348 TMEM86BQ8N661 226 aa9.77□□□□□ -0.84
SHMT2-229ENST00000557348 SLC50A1Q9BRV3 221 aa9.77□□□□□ -0.84
SHMT2-229ENST00000557348 NPFFR1Q9GZQ6 430 aa9.77□□□□□ -0.84
SHMT2-229ENST00000557348 RPP21Q9H633 154 aaKnown RBP9.77□□□□□ -0.84
SHMT2-229ENST00000557348 BUB3O43684 328 aa9.77□□□□□ -0.85
SHMT2-229ENST00000557348 IGHG4P01861 327 aa9.77□□□□□ -0.85
SHMT2-229ENST00000557348 PF4V1P10720 104 aa9.77□□□□□ -0.85
SHMT2-229ENST00000557348 BLCAPP62952 87 aa9.77□□□□□ -0.85
SHMT2-229ENST00000557348 GNG5P63218 68 aa9.77□□□□□ -0.85
SHMT2-229ENST00000557348 Q6AWC8 147 aa9.77□□□□□ -0.85
SHMT2-229ENST00000557348 AMMECR1LQ6DCA0 310 aa9.77□□□□□ -0.85
SHMT2-229ENST00000557348 UFSP1Q6NVU6 142 aa9.77□□□□□ -0.85
SHMT2-229ENST00000557348 RBPMS2Q6ZRY4 209 aaKnown RBP9.77□□□□□ -0.85
SHMT2-229ENST00000557348 MAPK1IP1LQ8NDC0 245 aa9.77□□□□□ -0.85
Retrieved 100 of 20,778 RNA–protein pairs in 54.1 ms