RNA–Protein interactions for RNA: ENST00000557005.1

SYNE2-223, Transcript of spectrin repeat containing nuclear envelope protein 2, human

TSL 2

Gene SYNE2, Length 5,804 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
SYNE2-223	ENST00000557005	OR11H6	Q8NGC7	330 aa		3.93	□□□□□ -1.78
SYNE2-223	ENST00000557005	ITLN2	Q8WWU7	325 aa	Predicted RBP	3.93	□□□□□ -1.78
SYNE2-223	ENST00000557005	KLF12	Q9Y4X4	402 aa		3.93	□□□□□ -1.78
SYNE2-223	ENST00000557005	MBD3L2B	A0A1B0GVZ6	204 aa	Predicted RBP	3.93	□□□□□ -1.78
SYNE2-223	ENST00000557005	IFITM1	P13164	125 aa		3.93	□□□□□ -1.78
SYNE2-223	ENST00000557005	FOXE3	Q13461	319 aa		3.93	□□□□□ -1.78
SYNE2-223	ENST00000557005	LINC01559	Q495D7	138 aa		3.93	□□□□□ -1.78
SYNE2-223	ENST00000557005	PRADC1	Q9BSG0	188 aa		3.93	□□□□□ -1.78
SYNE2-223	ENST00000557005	ATP6V0E1	O15342	81 aa		3.93	□□□□□ -1.78
SYNE2-223	ENST00000557005	FCN3	O75636	299 aa		3.93	□□□□□ -1.78
SYNE2-223	ENST00000557005	LOX	P28300	417 aa	Predicted RBP	3.93	□□□□□ -1.78
SYNE2-223	ENST00000557005	WFDC2	Q14508	124 aa		3.93	□□□□□ -1.78
SYNE2-223	ENST00000557005	RNASE13	Q5GAN3	156 aa	Known RBP	3.93	□□□□□ -1.78
SYNE2-223	ENST00000557005	MSRB1	Q9NZV6	116 aa		3.93	□□□□□ -1.78
SYNE2-223	ENST00000557005	TRBV7-1	A0A0A6YYK4	115 aa		3.92	□□□□□ -1.78
SYNE2-223	ENST00000557005	LINC00310	P59036	64 aa		3.92	□□□□□ -1.78
SYNE2-223	ENST00000557005	RRN3P1	Q2M238	152 aa		3.92	□□□□□ -1.78
SYNE2-223	ENST00000557005	PAPPA-AS1	Q5QFB9	102 aa		3.92	□□□□□ -1.78
SYNE2-223	ENST00000557005	C8orf86	Q6ZUL3	223 aa		3.92	□□□□□ -1.78
SYNE2-223	ENST00000557005	RPL39L	Q96EH5	51 aa	Known RBP	3.92	□□□□□ -1.78
SYNE2-223	ENST00000557005	TMEM101	Q96IK0	257 aa		3.92	□□□□□ -1.78
SYNE2-223	ENST00000557005	EDA2R	Q9HAV5	297 aa		3.92	□□□□□ -1.78
SYNE2-223	ENST00000557005	DAZAP2	Q15038	168 aa	Predicted RBP	3.92	□□□□□ -1.78
SYNE2-223	ENST00000557005	ANXA2R	Q3ZCQ2	193 aa		3.92	□□□□□ -1.78
SYNE2-223	ENST00000557005	PPDPFL	Q8WWR9	84 aa		3.92	□□□□□ -1.78
SYNE2-223	ENST00000557005	TRAV16	A0A0A6YYK6	109 aa	Predicted RBP	3.92	□□□□□ -1.78
SYNE2-223	ENST00000557005		A0A1W2PRX2	142 aa		3.92	□□□□□ -1.78
SYNE2-223	ENST00000557005		I3L2K1	104 aa		3.92	□□□□□ -1.78
SYNE2-223	ENST00000557005	PDE6H	Q13956	83 aa		3.92	□□□□□ -1.78
SYNE2-223	ENST00000557005	PRR30	Q53SZ7	412 aa	Predicted RBP	3.92	□□□□□ -1.78
SYNE2-223	ENST00000557005		A0A1B0GXF2	115 aa		3.92	□□□□□ -1.78
SYNE2-223	ENST00000557005	GAGE2A	Q6NT46	116 aa		3.92	□□□□□ -1.78
SYNE2-223	ENST00000557005	C2orf66	Q6UXQ4	117 aa		3.92	□□□□□ -1.78
SYNE2-223	ENST00000557005	TOMM7	Q9P0U1	55 aa		3.92	□□□□□ -1.78
SYNE2-223	ENST00000557005	CTSZ	Q9UBR2	303 aa		3.92	□□□□□ -1.78
SYNE2-223	ENST00000557005	TNRC6B	Q9UPQ9	1833 aa	Known RBP	3.92	□□□□□ -1.78
SYNE2-223	ENST00000557005	EP400	Q96L91	3159 aa		3.92	□□□□□ -1.78
SYNE2-223	ENST00000557005	IGKV1D-37	A0A075B6S9	117 aa		3.92	□□□□□ -1.78
SYNE2-223	ENST00000557005	ADARB2-AS1	A8MUL3	147 aa		3.92	□□□□□ -1.78
SYNE2-223	ENST00000557005	HOXB4	P17483	251 aa	Predicted RBP	3.92	□□□□□ -1.78
SYNE2-223	ENST00000557005	PHLDA1	Q8WV24	401 aa	Predicted RBP	3.92	□□□□□ -1.78
SYNE2-223	ENST00000557005	TMEM141	Q96I45	108 aa		3.92	□□□□□ -1.78
SYNE2-223	ENST00000557005	TIMM21	Q9BVV7	248 aa		3.92	□□□□□ -1.78
SYNE2-223	ENST00000557005	GNRH2	O43555	120 aa		3.91	□□□□□ -1.78
SYNE2-223	ENST00000557005	FOXI2	Q6ZQN5	318 aa		3.91	□□□□□ -1.78
SYNE2-223	ENST00000557005	MBD6	Q96DN6	1003 aa		3.91	□□□□□ -1.78
SYNE2-223	ENST00000557005	TRBV25-1	A0A075B6N4	114 aa		3.91	□□□□□ -1.78
SYNE2-223	ENST00000557005	TRAV12-2	A0A075B6T6	113 aa		3.91	□□□□□ -1.78
SYNE2-223	ENST00000557005	TRBV7-9	A0A0J9YWB2	115 aa		3.91	□□□□□ -1.78
SYNE2-223	ENST00000557005	C19orf71	A6NCJ1	209 aa		3.91	□□□□□ -1.78
SYNE2-223	ENST00000557005		K7EM74	188 aa		3.91	□□□□□ -1.78
SYNE2-223	ENST00000557005	DNAL4	O96015	105 aa		3.91	□□□□□ -1.78
SYNE2-223	ENST00000557005	TAL2	Q16559	108 aa		3.91	□□□□□ -1.78
SYNE2-223	ENST00000557005	BRD3OS	Q6XYD6	125 aa		3.91	□□□□□ -1.78
SYNE2-223	ENST00000557005	ZNF491	Q8N8L2	437 aa		3.91	□□□□□ -1.78
SYNE2-223	ENST00000557005	RNF5	Q99942	180 aa		3.91	□□□□□ -1.78
SYNE2-223	ENST00000557005	GOLGA4	Q13439	2230 aa	Known RBP	3.91	□□□□□ -1.78
SYNE2-223	ENST00000557005		G3V318	75 aa		3.91	□□□□□ -1.78
SYNE2-223	ENST00000557005	VCY	O14598	125 aa		3.91	□□□□□ -1.78
SYNE2-223	ENST00000557005	FGF6	P10767	208 aa		3.91	□□□□□ -1.78
SYNE2-223	ENST00000557005	PLEKHB2	Q96CS7	222 aa		3.91	□□□□□ -1.78
SYNE2-223	ENST00000557005	TRBV20-1	A0A075B6N2	111 aa		3.91	□□□□□ -1.78
SYNE2-223	ENST00000557005	TRAV13-1	A0A0B4J241	112 aa		3.91	□□□□□ -1.78
SYNE2-223	ENST00000557005	FAM223B	A6NKX1	122 aa		3.91	□□□□□ -1.78
SYNE2-223	ENST00000557005	WISP2	O76076	250 aa		3.91	□□□□□ -1.78
SYNE2-223	ENST00000557005	PMVK	Q15126	192 aa		3.91	□□□□□ -1.78
SYNE2-223	ENST00000557005	ZNF876P	Q49A33	203 aa		3.91	□□□□□ -1.78
SYNE2-223	ENST00000557005	FAM223A	Q8IWN6	122 aa		3.91	□□□□□ -1.78
SYNE2-223	ENST00000557005	TMEM190	Q8WZ59	177 aa		3.91	□□□□□ -1.78
SYNE2-223	ENST00000557005	MOB4	Q9Y3A3	225 aa		3.91	□□□□□ -1.78
SYNE2-223	ENST00000557005		M0R1W7	72 aa		3.9	□□□□□ -1.78
SYNE2-223	ENST00000557005	SLC25A20	O43772	301 aa		3.9	□□□□□ -1.78
SYNE2-223	ENST00000557005	POU2AF1	Q16633	256 aa		3.9	□□□□□ -1.78
SYNE2-223	ENST00000557005	TRPT1	Q86TN4	253 aa	Known RBP	3.9	□□□□□ -1.78
SYNE2-223	ENST00000557005	TRGV11	A0A075B6L2	103 aa		3.9	□□□□□ -1.78
SYNE2-223	ENST00000557005	TEX22	C9J3V5	150 aa		3.9	□□□□□ -1.78
SYNE2-223	ENST00000557005	LINC00311	Q8N616	119 aa		3.9	□□□□□ -1.78
SYNE2-223	ENST00000557005	ANKRD29	Q8N6D5	301 aa		3.9	□□□□□ -1.78
SYNE2-223	ENST00000557005	FAM110D	Q8TAY7	271 aa	Predicted RBP	3.9	□□□□□ -1.78
SYNE2-223	ENST00000557005	WI2-2373I1.2	A0A1W2PRP0	233 aa		3.9	□□□□□ -1.79
SYNE2-223	ENST00000557005	PRAC2	D3DTV9	90 aa		3.9	□□□□□ -1.79
SYNE2-223	ENST00000557005	IGHV3-53	P01767	116 aa		3.9	□□□□□ -1.79
SYNE2-223	ENST00000557005	BOD1L2	Q8IYS8	172 aa		3.9	□□□□□ -1.79
SYNE2-223	ENST00000557005	BAALC	Q8WXS3	180 aa		3.9	□□□□□ -1.79
SYNE2-223	ENST00000557005	C1orf159	Q96HA4	380 aa		3.9	□□□□□ -1.79
SYNE2-223	ENST00000557005	CHD3	Q12873	2000 aa	Known RBP	3.9	□□□□□ -1.79
SYNE2-223	ENST00000557005	NCKAP5	O14513	1909 aa		3.9	□□□□□ -1.79
SYNE2-223	ENST00000557005	IGHV3-38	A0A0C4DH36	116 aa		3.9	□□□□□ -1.79
SYNE2-223	ENST00000557005	RBMY1B	A6NDE4	496 aa	Known RBP	3.9	□□□□□ -1.79
SYNE2-223	ENST00000557005	RBMY1E	A6NEQ0	496 aa	Known RBP	3.9	□□□□□ -1.79
SYNE2-223	ENST00000557005	LEPROT	O15243	131 aa		3.9	□□□□□ -1.79
SYNE2-223	ENST00000557005	RBMY1D	P0C7P1	496 aa	Known RBP	3.9	□□□□□ -1.79
SYNE2-223	ENST00000557005	RBMY1A1	P0DJD3	496 aa	Known RBP	3.9	□□□□□ -1.79
SYNE2-223	ENST00000557005	RBMY1C	P0DJD4	496 aa		3.9	□□□□□ -1.79
SYNE2-223	ENST00000557005	MSMP	Q1L6U9	139 aa		3.9	□□□□□ -1.79
SYNE2-223	ENST00000557005	C2orf91	Q6ZV80	131 aa		3.9	□□□□□ -1.79
SYNE2-223	ENST00000557005	IGLV3-9	A0A075B6K5	115 aa		3.89	□□□□□ -1.79
SYNE2-223	ENST00000557005	IGHV3-16	A0A0C4DH30	117 aa		3.89	□□□□□ -1.79
SYNE2-223	ENST00000557005	LGALS1	P09382	135 aa	Known RBP	3.89	□□□□□ -1.79
SYNE2-223	ENST00000557005	TOMM6	Q96B49	74 aa		3.89	□□□□□ -1.79

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