RNA–Protein interactions for RNA: ENST00000554873.5

SYNE3-203, Transcript of spectrin repeat containing nuclear envelope family member 3, humanhuman

TSL 5 BASIC

Gene SYNE3, Length 2,826 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE3-203ENST00000554873 RP1L1Q8IWN7 2480 aaPredicted RBP12.32□□□□□ -0.44
SYNE3-203ENST00000554873 ZCCHC24Q8N2G6 241 aaKnown RBP12.32□□□□□ -0.44
SYNE3-203ENST00000554873 FOXC2Q99958 501 aa12.32□□□□□ -0.44
SYNE3-203ENST00000554873 YAE1D1Q9NRH1 226 aa12.32□□□□□ -0.44
SYNE3-203ENST00000554873 BOD1L1Q8NFC6 3051 aa12.32□□□□□ -0.44
SYNE3-203ENST00000554873 CENPVL3A0A0U1RRI6 287 aa12.32□□□□□ -0.44
SYNE3-203ENST00000554873 C22orf34Q6ZV56 151 aa12.32□□□□□ -0.44
SYNE3-203ENST00000554873 PLXNB1O43157 2135 aa12.32□□□□□ -0.44
SYNE3-203ENST00000554873 WT1-ASQ06250 92 aa12.31□□□□□ -0.44
SYNE3-203ENST00000554873 LINC01546A6NGU7 62 aa12.31□□□□□ -0.44
SYNE3-203ENST00000554873 CGB1A6NKQ9 187 aa12.31□□□□□ -0.44
SYNE3-203ENST00000554873 LEPP41159 167 aa12.31□□□□□ -0.44
SYNE3-203ENST00000554873 C10orf55Q5SWW7 151 aa12.31□□□□□ -0.44
SYNE3-203ENST00000554873 KIR2DL4Q99706 377 aa12.31□□□□□ -0.44
SYNE3-203ENST00000554873 MAP1LC3AQ9H492 121 aa12.31□□□□□ -0.44
SYNE3-203ENST00000554873 INS-IGF2F8WCM5 200 aa12.3□□□□□ -0.44
SYNE3-203ENST00000554873 LYZL1Q6UWQ5 148 aa12.3□□□□□ -0.44
SYNE3-203ENST00000554873 TMEM160Q9NX00 188 aa12.3□□□□□ -0.44
SYNE3-203ENST00000554873 MRPL36Q9P0J6 103 aaKnown RBP12.3□□□□□ -0.44
SYNE3-203ENST00000554873 SMG1Q96Q15 3661 aaKnown RBP12.3□□□□□ -0.44
SYNE3-203ENST00000554873 ROS1P08922 2347 aa12.3□□□□□ -0.44
SYNE3-203ENST00000554873 SMKR1H3BMG3 65 aa12.3□□□□□ -0.44
SYNE3-203ENST00000554873 IFITM1P13164 125 aa12.3□□□□□ -0.44
SYNE3-203ENST00000554873 TMEM30BQ3MIR4 351 aa12.3□□□□□ -0.44
SYNE3-203ENST00000554873 TTC32Q5I0X7 151 aa12.3□□□□□ -0.44
SYNE3-203ENST00000554873 FBXL15Q9H469 300 aa12.3□□□□□ -0.44
SYNE3-203ENST00000554873 TRBV20-1A0A075B6N2 111 aa12.29□□□□□ -0.44
SYNE3-203ENST00000554873 CCL3L1P16619 93 aa12.29□□□□□ -0.44
SYNE3-203ENST00000554873 LYRM7Q5U5X0 104 aa12.29□□□□□ -0.44
SYNE3-203ENST00000554873 RPEQ96AT9 228 aa12.29□□□□□ -0.44
SYNE3-203ENST00000554873 TRAV40A0A0B4J280 105 aa12.29□□□□□ -0.44
SYNE3-203ENST00000554873 PIP4P1Q86T03 277 aa12.29□□□□□ -0.44
SYNE3-203ENST00000554873 SBSPONQ8IVN8 264 aa12.29□□□□□ -0.44
SYNE3-203ENST00000554873 SSUH2Q9Y2M2 353 aa12.29□□□□□ -0.44
SYNE3-203ENST00000554873 NCBP2LA6PVI3 153 aaKnown RBP12.29□□□□□ -0.44
SYNE3-203ENST00000554873 PRTN3P24158 256 aa12.29□□□□□ -0.44
SYNE3-203ENST00000554873 TEX36Q5VZQ5 186 aa12.29□□□□□ -0.44
SYNE3-203ENST00000554873 FAM215AQ9Y5M1 114 aa12.29□□□□□ -0.44
SYNE3-203ENST00000554873 BDP1A6H8Y1 2624 aa12.28□□□□□ -0.44
SYNE3-203ENST00000554873 AGRNO00468 2067 aa12.28□□□□□ -0.44
SYNE3-203ENST00000554873 LOC107984156A0A0G2JMH3 177 aa12.28□□□□□ -0.44
SYNE3-203ENST00000554873 A8MWV9 139 aa12.28□□□□□ -0.44
SYNE3-203ENST00000554873 SNCGO76070 127 aa12.28□□□□□ -0.44
SYNE3-203ENST00000554873 CRIP1P50238 77 aa12.28□□□□□ -0.44
SYNE3-203ENST00000554873 SUB1P53999 127 aaKnown RBP eCLIP12.28□□□□□ -0.44
SYNE3-203ENST00000554873 DEFB109BQ30KR1 87 aa12.28□□□□□ -0.44
SYNE3-203ENST00000554873 ARL17AQ8IVW1 177 aa12.28□□□□□ -0.44
SYNE3-203ENST00000554873 TMEM75Q8N9X5 138 aa12.28□□□□□ -0.44
SYNE3-203ENST00000554873 TMEM167AQ8TBQ9 72 aa12.28□□□□□ -0.44
SYNE3-203ENST00000554873 LINC01548A6NM66 108 aa12.28□□□□□ -0.44
SYNE3-203ENST00000554873 CCL8P80075 99 aa12.28□□□□□ -0.44
SYNE3-203ENST00000554873 C3orf36Q3SXR2 165 aa12.28□□□□□ -0.44
SYNE3-203ENST00000554873 MYMXA0A1B0GTQ4 84 aa12.27□□□□□ -0.44
SYNE3-203ENST00000554873 FCN3O75636 299 aa12.27□□□□□ -0.44
SYNE3-203ENST00000554873 IGHG4P01861 327 aa12.27□□□□□ -0.44
SYNE3-203ENST00000554873 ASIPP42127 132 aa12.27□□□□□ -0.44
SYNE3-203ENST00000554873 UBE2D3P61077 147 aa12.27□□□□□ -0.44
SYNE3-203ENST00000554873 UBE2D2P62837 147 aa12.27□□□□□ -0.44
SYNE3-203ENST00000554873 EXOC3-AS1Q8N2X6 119 aa12.27□□□□□ -0.44
SYNE3-203ENST00000554873 AJUBAQ96IF1 538 aa12.27□□□□□ -0.44
SYNE3-203ENST00000554873 SLC25A39Q9BZJ4 359 aaPredicted RBP12.27□□□□□ -0.44
SYNE3-203ENST00000554873 ID1P41134 155 aa12.27□□□□□ -0.45
SYNE3-203ENST00000554873 FAM27E3Q08E93 113 aa12.27□□□□□ -0.45
SYNE3-203ENST00000554873 RUSC1-AS1Q66K80 236 aa12.27□□□□□ -0.45
SYNE3-203ENST00000554873 Q6Q795 121 aa12.27□□□□□ -0.45
SYNE3-203ENST00000554873 ZFP2Q6ZN57 461 aa12.27□□□□□ -0.45
SYNE3-203ENST00000554873 DEFB123Q8N688 67 aa12.27□□□□□ -0.45
SYNE3-203ENST00000554873 LINC01549A6NIU2 74 aa12.26□□□□□ -0.45
SYNE3-203ENST00000554873 TMEM200BQ69YZ2 307 aa12.26□□□□□ -0.45
SYNE3-203ENST00000554873 OR4C13Q8NGP0 309 aa12.26□□□□□ -0.45
SYNE3-203ENST00000554873 MRPL35Q9NZE8 188 aaKnown RBP12.26□□□□□ -0.45
SYNE3-203ENST00000554873 VPREB3Q9UKI3 123 aa12.26□□□□□ -0.45
SYNE3-203ENST00000554873 TMEM190Q8WZ59 177 aa12.26□□□□□ -0.45
SYNE3-203ENST00000554873 NXT2Q9NPJ8 142 aaKnown RBP12.26□□□□□ -0.45
SYNE3-203ENST00000554873 ABCA1O95477 2261 aa12.26□□□□□ -0.45
SYNE3-203ENST00000554873 IGLV2-23P01705 113 aa12.25□□□□□ -0.45
SYNE3-203ENST00000554873 CD40P25942 277 aa12.25□□□□□ -0.45
SYNE3-203ENST00000554873 ANKRD29Q8N6D5 301 aa12.25□□□□□ -0.45
SYNE3-203ENST00000554873 TRGV9Q99603 122 aa12.25□□□□□ -0.45
SYNE3-203ENST00000554873 MAP1BP46821 2468 aaKnown RBP12.25□□□□□ -0.45
SYNE3-203ENST00000554873 TRAV4A0A0B4J268 109 aa12.24□□□□□ -0.45
SYNE3-203ENST00000554873 FAM159AQ6UWV7 190 aa12.24□□□□□ -0.45
SYNE3-203ENST00000554873 PPP1R27Q86WC6 154 aa12.24□□□□□ -0.45
SYNE3-203ENST00000554873 CEP250Q9BV73 2442 aa12.24□□□□□ -0.45
SYNE3-203ENST00000554873 ASCL2Q99929 193 aa12.24□□□□□ -0.45
SYNE3-203ENST00000554873 TPSG1Q9NRR2 321 aa12.24□□□□□ -0.45
SYNE3-203ENST00000554873 TMEM14CQ9P0S9 112 aa12.24□□□□□ -0.45
SYNE3-203ENST00000554873 A0A1W2PPI3 338 aa12.24□□□□□ -0.45
SYNE3-203ENST00000554873 EP300Q09472 2414 aaPredicted RBP12.23□□□□□ -0.45
SYNE3-203ENST00000554873 TMSB15BA0A087X1C1 80 aa12.23□□□□□ -0.45
SYNE3-203ENST00000554873 PLNP26678 52 aa12.23□□□□□ -0.45
SYNE3-203ENST00000554873 UBE2D1P51668 147 aa12.23□□□□□ -0.45
SYNE3-203ENST00000554873 MRGPRG-AS1Q2M3A8 158 aa12.23□□□□□ -0.45
SYNE3-203ENST00000554873 SFTA2Q6UW10 78 aa12.23□□□□□ -0.45
SYNE3-203ENST00000554873 CNOT1A5YKK6 2376 aaKnown RBP12.23□□□□□ -0.45
SYNE3-203ENST00000554873 HCP5Q6MZN7 132 aa12.22□□□□□ -0.45
SYNE3-203ENST00000554873 RASL11BQ9BPW5 248 aa12.22□□□□□ -0.45
SYNE3-203ENST00000554873 RAB1BQ9H0U4 201 aa12.22□□□□□ -0.45
SYNE3-203ENST00000554873 HIGD1AQ9Y241 93 aa12.22□□□□□ -0.45
SYNE3-203ENST00000554873 H3BVH4 76 aa12.22□□□□□ -0.45
Retrieved 100 of 20,778 RNA–protein pairs in 120.9 ms