RNA–Protein interactions for RNA: ENST00000545707.5

LDLR-204, Transcript of low density lipoprotein receptor, humanhuman

TSL 2 BASIC

Gene LDLR, Length 2,429 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-204ENST00000545707 IGHV3-49A0A0A0MS15 119 aa12.26□□□□□ -0.45
LDLR-204ENST00000545707 AMMECR1LQ6DCA0 310 aa12.26□□□□□ -0.45
LDLR-204ENST00000545707 ZNF48Q96MX3 618 aaPredicted RBP12.26□□□□□ -0.45
LDLR-204ENST00000545707 MSRB2Q9Y3D2 182 aa12.26□□□□□ -0.45
LDLR-204ENST00000545707 HIST1H1AQ02539 215 aaPredicted RBP12.26□□□□□ -0.45
LDLR-204ENST00000545707 C11orf71Q6IPW1 123 aa12.26□□□□□ -0.45
LDLR-204ENST00000545707 A0A1W2PPR1 153 aa12.25□□□□□ -0.45
LDLR-204ENST00000545707 LINC01548A6NM66 108 aa12.25□□□□□ -0.45
LDLR-204ENST00000545707 CLEC3BP05452 202 aa12.25□□□□□ -0.45
LDLR-204ENST00000545707 UQCRFS1P47985 274 aa12.25□□□□□ -0.45
LDLR-204ENST00000545707 C15orf32Q32M92 178 aa12.25□□□□□ -0.45
LDLR-204ENST00000545707 PRSS57Q6UWY2 283 aa12.25□□□□□ -0.45
LDLR-204ENST00000545707 SELENOKQ9Y6D0 94 aa12.25□□□□□ -0.45
LDLR-204ENST00000545707 CCDC144NLQ6NUI1 221 aa12.25□□□□□ -0.45
LDLR-204ENST00000545707 Q8N9W7 124 aa12.25□□□□□ -0.45
LDLR-204ENST00000545707 C18orf15Q96N68 181 aa12.25□□□□□ -0.45
LDLR-204ENST00000545707 ZNF207O43670 478 aaKnown RBP12.24□□□□□ -0.45
LDLR-204ENST00000545707 IGLC6P0CF74 106 aa12.23□□□□□ -0.45
LDLR-204ENST00000545707 PAX8Q06710 450 aa12.23□□□□□ -0.45
LDLR-204ENST00000545707 COL12A1Q99715 3063 aa12.23□□□□□ -0.45
LDLR-204ENST00000545707 G3V318 75 aa12.23□□□□□ -0.45
LDLR-204ENST00000545707 GATA1P15976 413 aaPredicted RBP12.23□□□□□ -0.45
LDLR-204ENST00000545707 EVI2AP22794 236 aa12.23□□□□□ -0.45
LDLR-204ENST00000545707 RBX1P62877 108 aa12.23□□□□□ -0.45
LDLR-204ENST00000545707 TRAV8-6A0A0B4J262 113 aa12.22□□□□□ -0.45
LDLR-204ENST00000545707 HBDP02042 147 aa12.22□□□□□ -0.45
LDLR-204ENST00000545707 FGF6P10767 208 aa12.22□□□□□ -0.45
LDLR-204ENST00000545707 IL17RELQ6ZVW7 336 aa12.22□□□□□ -0.45
LDLR-204ENST00000545707 ATP6V0E1O15342 81 aa12.22□□□□□ -0.45
LDLR-204ENST00000545707 BMI1P35226 326 aa12.22□□□□□ -0.45
LDLR-204ENST00000545707 PCP4P48539 62 aa12.22□□□□□ -0.45
LDLR-204ENST00000545707 Q6ZQT7 251 aa12.22□□□□□ -0.45
LDLR-204ENST00000545707 COX8CQ7Z4L0 72 aa12.22□□□□□ -0.45
LDLR-204ENST00000545707 RNF185Q96GF1 192 aa12.22□□□□□ -0.45
LDLR-204ENST00000545707 DKK2Q9UBU2 259 aa12.22□□□□□ -0.45
LDLR-204ENST00000545707 EBI3Q14213 229 aa12.21□□□□□ -0.45
LDLR-204ENST00000545707 CLEC19AQ6UXS0 136 aa12.21□□□□□ -0.45
LDLR-204ENST00000545707 TMEM190Q8WZ59 177 aa12.21□□□□□ -0.45
LDLR-204ENST00000545707 IFI27L1Q96BM0 104 aa12.21□□□□□ -0.45
LDLR-204ENST00000545707 RAXQ9Y2V3 346 aa12.21□□□□□ -0.45
LDLR-204ENST00000545707 TMEM97Q5BJF2 176 aa12.21□□□□□ -0.46
LDLR-204ENST00000545707 ZNF502Q8TBZ5 544 aa12.21□□□□□ -0.46
LDLR-204ENST00000545707 FABP5P3A8MUU1 101 aa12.2□□□□□ -0.46
LDLR-204ENST00000545707 K7EP13 123 aa12.2□□□□□ -0.46
LDLR-204ENST00000545707 BUB3O43684 328 aa12.2□□□□□ -0.46
LDLR-204ENST00000545707 CD5LO43866 347 aa12.2□□□□□ -0.46
LDLR-204ENST00000545707 LGALS9BQ3B8N2 356 aa12.2□□□□□ -0.46
LDLR-204ENST00000545707 LGALS9CQ6DKI2 356 aa12.2□□□□□ -0.46
LDLR-204ENST00000545707 PSMG3-AS1Q96PY0 264 aa12.2□□□□□ -0.46
LDLR-204ENST00000545707 NAA38Q9BRA0 125 aaKnown RBP12.2□□□□□ -0.46
LDLR-204ENST00000545707 ZFAND3Q9H8U3 227 aa12.2□□□□□ -0.46
LDLR-204ENST00000545707 RNF151Q2KHN1 245 aa12.2□□□□□ -0.46
LDLR-204ENST00000545707 PCP2Q8IVA1 136 aa12.2□□□□□ -0.46
LDLR-204ENST00000545707 AJUBAQ96IF1 538 aa12.2□□□□□ -0.46
LDLR-204ENST00000545707 SIRPDQ9H106 197 aa12.2□□□□□ -0.46
LDLR-204ENST00000545707 C11orf21Q9P2W6 132 aa12.2□□□□□ -0.46
LDLR-204ENST00000545707 CHD8Q9HCK8 2581 aa12.2□□□□□ -0.46
LDLR-204ENST00000545707 SPTAN1Q13813 2472 aaKnown RBP12.19□□□□□ -0.46
LDLR-204ENST00000545707 C7orf71A4D174 169 aa12.19□□□□□ -0.46
LDLR-204ENST00000545707 NMUP48645 174 aa12.19□□□□□ -0.46
LDLR-204ENST00000545707 UNQ5830/PRO19650/PRO19816Q6UY13 95 aa12.19□□□□□ -0.46
LDLR-204ENST00000545707 CLPSL1A2RUU4 121 aa12.19□□□□□ -0.46
LDLR-204ENST00000545707 RPS20P60866 119 aaKnown RBP12.19□□□□□ -0.46
LDLR-204ENST00000545707 MINOS1Q5TGZ0 78 aa12.19□□□□□ -0.46
LDLR-204ENST00000545707 C1orf122Q6ZSJ8 110 aa12.19□□□□□ -0.46
LDLR-204ENST00000545707 MINOS1-NBL1R4GNA1 71 aa12.19□□□□□ -0.46
LDLR-204ENST00000545707 NCOR2Q9Y618 2525 aa12.18□□□□□ -0.46
LDLR-204ENST00000545707 SAA4P35542 130 aa12.18□□□□□ -0.46
LDLR-204ENST00000545707 CCDC140Q96MF4 163 aa12.18□□□□□ -0.46
LDLR-204ENST00000545707 AGPAT4-IT1Q9H0P7 198 aa12.18□□□□□ -0.46
LDLR-204ENST00000545707 LINC00527Q9UJ94 153 aa12.18□□□□□ -0.46
LDLR-204ENST00000545707 SPTBN4Q9H254 2564 aa12.18□□□□□ -0.46
LDLR-204ENST00000545707 LEPP41159 167 aa12.18□□□□□ -0.46
LDLR-204ENST00000545707 FAM110DQ8TAY7 271 aaPredicted RBP12.18□□□□□ -0.46
LDLR-204ENST00000545707 IGKV3D-20A0A0C4DH25 116 aa12.17□□□□□ -0.46
LDLR-204ENST00000545707 OOSP1A8MZH6 123 aa12.17□□□□□ -0.46
LDLR-204ENST00000545707 SCGB2A1O75556 95 aa12.17□□□□□ -0.46
LDLR-204ENST00000545707 TNFRSF6BO95407 300 aa12.17□□□□□ -0.46
LDLR-204ENST00000545707 BOD1L2Q8IYS8 172 aa12.17□□□□□ -0.46
LDLR-204ENST00000545707 TTTY13Q9BZ97 58 aa12.17□□□□□ -0.46
LDLR-204ENST00000545707 TRGV3P03979 118 aa12.17□□□□□ -0.46
LDLR-204ENST00000545707 MAP1LC3AQ9H492 121 aa12.17□□□□□ -0.46
LDLR-204ENST00000545707 IGHV3OR16-10A0A075B7F0 116 aa12.16□□□□□ -0.46
LDLR-204ENST00000545707 TMEM219Q86XT9 240 aa12.16□□□□□ -0.46
LDLR-204ENST00000545707 UBTD1Q9HAC8 227 aa12.16□□□□□ -0.46
LDLR-204ENST00000545707 HIVEP3Q5T1R4 2406 aa12.16□□□□□ -0.46
LDLR-204ENST00000545707 TRAV26-2A0A0B4J265 109 aa12.16□□□□□ -0.46
LDLR-204ENST00000545707 SMAD7O15105 426 aaKnown RBP12.16□□□□□ -0.46
LDLR-204ENST00000545707 GOSR1O95249 250 aa12.16□□□□□ -0.46
LDLR-204ENST00000545707 KLRB1Q12918 225 aa12.16□□□□□ -0.46
LDLR-204ENST00000545707 TM4SF20Q53R12 229 aa12.16□□□□□ -0.46
LDLR-204ENST00000545707 DTX2Q86UW9 622 aa12.16□□□□□ -0.46
LDLR-204ENST00000545707 ARL6IP6Q8N6S5 226 aa12.16□□□□□ -0.46
LDLR-204ENST00000545707 TRAV8-2A0A0B4J237 113 aa12.15□□□□□ -0.46
LDLR-204ENST00000545707 A1L4Q6 167 aa12.15□□□□□ -0.47
LDLR-204ENST00000545707 J3KRW8 73 aa12.15□□□□□ -0.47
LDLR-204ENST00000545707 SPRY2O43597 315 aa12.15□□□□□ -0.47
LDLR-204ENST00000545707 RAB37Q96AX2 223 aa12.15□□□□□ -0.47
LDLR-204ENST00000545707 CST9LQ9H4G1 147 aa12.15□□□□□ -0.47
LDLR-204ENST00000545707 IGKV2D-26A0A0A0MRZ7 120 aa12.14□□□□□ -0.47
Retrieved 100 of 20,778 RNA–protein pairs in 45.2 ms