RNA–Protein interactions for RNA: ENST00000544547.5

LIMS1-215, Transcript of LIM zinc finger domain containing 1, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene LIMS1, Length 4,461 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMS1-215ENST00000544547 TRGV9Q99603 122 aa11.4□□□□□ -0.58
LIMS1-215ENST00000544547 PIEZO2Q9H5I5 2752 aa11.4□□□□□ -0.58
LIMS1-215ENST00000544547 UBE2L6O14933 153 aa11.4□□□□□ -0.58
LIMS1-215ENST00000544547 MRPL35Q9NZE8 188 aaKnown RBP11.4□□□□□ -0.58
LIMS1-215ENST00000544547 IGHV3-64A0A075B6Q5 118 aa11.4□□□□□ -0.59
LIMS1-215ENST00000544547 TMEM262E9PQX1 116 aa11.4□□□□□ -0.59
LIMS1-215ENST00000544547 RNASE6Q93091 150 aaKnown RBP11.4□□□□□ -0.59
LIMS1-215ENST00000544547 CEACAM4O75871 244 aa11.39□□□□□ -0.59
LIMS1-215ENST00000544547 TNFRSF6BO95407 300 aa11.39□□□□□ -0.59
LIMS1-215ENST00000544547 NDUFA4L2Q9NRX3 87 aa11.39□□□□□ -0.59
LIMS1-215ENST00000544547 LTAP01374 205 aa11.39□□□□□ -0.59
LIMS1-215ENST00000544547 ADIPOQQ15848 244 aa11.39□□□□□ -0.59
LIMS1-215ENST00000544547 CLEC19AQ6UXS0 136 aa11.39□□□□□ -0.59
LIMS1-215ENST00000544547 SMPXQ9UHP9 88 aa11.39□□□□□ -0.59
LIMS1-215ENST00000544547 LAGE3Q14657 143 aa11.39□□□□□ -0.59
LIMS1-215ENST00000544547 TMEM155Q4W5P6 130 aa11.39□□□□□ -0.59
LIMS1-215ENST00000544547 C17orf77Q96MU5 243 aa11.39□□□□□ -0.59
LIMS1-215ENST00000544547 HCFC1P51610 2035 aa11.39□□□□□ -0.59
LIMS1-215ENST00000544547 TRAV2A0A0B4J234 112 aa11.39□□□□□ -0.59
LIMS1-215ENST00000544547 CEND1Q8N111 149 aa11.39□□□□□ -0.59
LIMS1-215ENST00000544547 FAM167A-AS1Q96KT0 104 aa11.39□□□□□ -0.59
LIMS1-215ENST00000544547 C12orf74Q32Q52 190 aa11.38□□□□□ -0.59
LIMS1-215ENST00000544547 PATE2Q6UY27 113 aa11.38□□□□□ -0.59
LIMS1-215ENST00000544547 ZNF562Q6V9R5 426 aa11.38□□□□□ -0.59
LIMS1-215ENST00000544547 TPSG1Q9NRR2 321 aa11.38□□□□□ -0.59
LIMS1-215ENST00000544547 TRBV25-1A0A075B6N4 114 aa11.38□□□□□ -0.59
LIMS1-215ENST00000544547 C3orf36Q3SXR2 165 aa11.38□□□□□ -0.59
LIMS1-215ENST00000544547 PROP1O75360 226 aa11.38□□□□□ -0.59
LIMS1-215ENST00000544547 LOXL1Q08397 574 aaPredicted RBP11.38□□□□□ -0.59
LIMS1-215ENST00000544547 KRTAP27-1Q3LI81 207 aa11.38□□□□□ -0.59
LIMS1-215ENST00000544547 LINC00322Q6ZN03 302 aaPredicted RBP11.38□□□□□ -0.59
LIMS1-215ENST00000544547 MDS2Q8NDY4 140 aa11.38□□□□□ -0.59
LIMS1-215ENST00000544547 P0C879 139 aa11.37□□□□□ -0.59
LIMS1-215ENST00000544547 TMEM95Q3KNT9 176 aa11.37□□□□□ -0.59
LIMS1-215ENST00000544547 TRBV20-1A0A075B6N2 111 aa11.37□□□□□ -0.59
LIMS1-215ENST00000544547 NBR2O15453 112 aa11.37□□□□□ -0.59
LIMS1-215ENST00000544547 DIAPH2-AS1Q14236 149 aa11.37□□□□□ -0.59
LIMS1-215ENST00000544547 C17orf58Q2M2W7 97 aa11.37□□□□□ -0.59
LIMS1-215ENST00000544547 C9JAW5 83 aa11.37□□□□□ -0.59
LIMS1-215ENST00000544547 DAZAP2Q15038 168 aaPredicted RBP11.37□□□□□ -0.59
LIMS1-215ENST00000544547 TMEM75Q8N9X5 138 aa11.37□□□□□ -0.59
LIMS1-215ENST00000544547 C11orf53Q8IXP5 236 aa11.37□□□□□ -0.59
LIMS1-215ENST00000544547 C10orf126Q8N4M7 172 aa11.37□□□□□ -0.59
LIMS1-215ENST00000544547 IGHV1-46P01743 117 aa11.36□□□□□ -0.59
LIMS1-215ENST00000544547 EFNA4P52798 201 aa11.36□□□□□ -0.59
LIMS1-215ENST00000544547 VCX2Q9H322 139 aa11.36□□□□□ -0.59
LIMS1-215ENST00000544547 PF4P02776 101 aa11.36□□□□□ -0.59
LIMS1-215ENST00000544547 PAPPA-AS1Q5QFB9 102 aa11.36□□□□□ -0.59
LIMS1-215ENST00000544547 TMEM200BQ69YZ2 307 aa11.36□□□□□ -0.59
LIMS1-215ENST00000544547 IGLL5B9A064 214 aa11.36□□□□□ -0.59
LIMS1-215ENST00000544547 MEIG1Q5JSS6 88 aa11.36□□□□□ -0.59
LIMS1-215ENST00000544547 SP5Q6BEB4 398 aaPredicted RBP11.35□□□□□ -0.59
LIMS1-215ENST00000544547 BOD1L2Q8IYS8 172 aa11.35□□□□□ -0.59
LIMS1-215ENST00000544547 TRAV26-2A0A0B4J265 109 aa11.35□□□□□ -0.59
LIMS1-215ENST00000544547 SIVA1O15304 175 aa11.35□□□□□ -0.59
LIMS1-215ENST00000544547 GATA1P15976 413 aaPredicted RBP11.35□□□□□ -0.59
LIMS1-215ENST00000544547 CNTFRP26992 372 aa11.35□□□□□ -0.59
LIMS1-215ENST00000544547 C2CD3Q4AC94 2353 aa11.35□□□□□ -0.59
LIMS1-215ENST00000544547 SUMO2P61956 95 aaKnown RBP11.35□□□□□ -0.59
LIMS1-215ENST00000544547 LY6DQ14210 128 aa11.35□□□□□ -0.59
LIMS1-215ENST00000544547 MOB4Q9Y3A3 225 aa11.35□□□□□ -0.59
LIMS1-215ENST00000544547 CIRBPQ14011 172 aaKnown RBP11.34□□□□□ -0.59
LIMS1-215ENST00000544547 FOXI2Q6ZQN5 318 aa11.34□□□□□ -0.59
LIMS1-215ENST00000544547 TRAV12-3A0A0B4J271 114 aa11.34□□□□□ -0.59
LIMS1-215ENST00000544547 ASIPP42127 132 aa11.34□□□□□ -0.59
LIMS1-215ENST00000544547 GAFA1Q96PS6 74 aa11.34□□□□□ -0.59
LIMS1-215ENST00000544547 C20orf78Q9BR46 151 aa11.34□□□□□ -0.59
LIMS1-215ENST00000544547 ANKHD1Q8IWZ3 2542 aaKnown RBP11.34□□□□□ -0.59
LIMS1-215ENST00000544547 TRAV8-4A0A0B4J246 113 aa11.34□□□□□ -0.59
LIMS1-215ENST00000544547 TIMM23O14925 209 aa11.34□□□□□ -0.59
LIMS1-215ENST00000544547 ERCC8Q13216 396 aa11.34□□□□□ -0.59
LIMS1-215ENST00000544547 GLMPQ8WWB7 406 aa11.34□□□□□ -0.59
LIMS1-215ENST00000544547 ITLN2Q8WWU7 325 aaPredicted RBP11.34□□□□□ -0.59
LIMS1-215ENST00000544547 H7C1H1 209 aa11.33□□□□□ -0.6
LIMS1-215ENST00000544547 UTF1Q5T230 341 aa11.33□□□□□ -0.6
LIMS1-215ENST00000544547 PVRIGQ6DKI7 326 aa11.33□□□□□ -0.6
LIMS1-215ENST00000544547 SPAG8Q99932 426 aaPredicted RBP11.33□□□□□ -0.6
LIMS1-215ENST00000544547 PIEZO1Q92508 2521 aa11.33□□□□□ -0.6
LIMS1-215ENST00000544547 PLNP26678 52 aa11.33□□□□□ -0.6
LIMS1-215ENST00000544547 MRPL36Q9P0J6 103 aaKnown RBP11.33□□□□□ -0.6
LIMS1-215ENST00000544547 HLA-DRB4P13762 266 aa11.33□□□□□ -0.6
LIMS1-215ENST00000544547 SLC25A16P16260 332 aa11.33□□□□□ -0.6
LIMS1-215ENST00000544547 HLA-DRB4X5D2U9 266 aa11.33□□□□□ -0.6
LIMS1-215ENST00000544547 TRBV19A0A075B6N1 114 aa11.32□□□□□ -0.6
LIMS1-215ENST00000544547 SCGB1A1P11684 91 aa11.32□□□□□ -0.6
LIMS1-215ENST00000544547 PPDPFLQ8WWR9 84 aa11.32□□□□□ -0.6
LIMS1-215ENST00000544547 MSRB1Q9NZV6 116 aa11.32□□□□□ -0.6
LIMS1-215ENST00000544547 ERG28Q9UKR5 140 aa11.32□□□□□ -0.6
LIMS1-215ENST00000544547 PPP1R17O96001 155 aa11.32□□□□□ -0.6
LIMS1-215ENST00000544547 SMIM20Q8N5G0 67 aa11.32□□□□□ -0.6
LIMS1-215ENST00000544547 NPC2P61916 151 aa11.32□□□□□ -0.6
LIMS1-215ENST00000544547 MBD6Q96DN6 1003 aa11.32□□□□□ -0.6
LIMS1-215ENST00000544547 LINC00527Q9UJ94 153 aa11.32□□□□□ -0.6
LIMS1-215ENST00000544547 TNFRSF18Q9Y5U5 241 aa11.32□□□□□ -0.6
LIMS1-215ENST00000544547 E7EUB6 86 aa11.31□□□□□ -0.6
LIMS1-215ENST00000544547 Q8N7P7 452 aa11.31□□□□□ -0.6
LIMS1-215ENST00000544547 PTH2Q96A98 100 aa11.31□□□□□ -0.6
LIMS1-215ENST00000544547 PLSCR4Q9NRQ2 329 aa11.31□□□□□ -0.6
LIMS1-215ENST00000544547 A0A1B0GXF2 115 aa11.31□□□□□ -0.6
LIMS1-215ENST00000544547 SIGLEC9Q9Y336 463 aa11.31□□□□□ -0.6
Retrieved 100 of 20,778 RNA–protein pairs in 30.2 ms