RNA–Protein interactions for RNA: ENST00000544040.5

CHD4-210, Transcript of chromodomain helicase DNA binding protein 4, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene CHD4, Length 6,514 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHD4-210ENST00000544040 Q6ZVH6 145 aa12.36□□□□□ -0.43
CHD4-210ENST00000544040 UBR3Q6ZT12 1888 aa12.36□□□□□ -0.43
CHD4-210ENST00000544040 SHISA9B4DS77 424 aa12.36□□□□□ -0.43
CHD4-210ENST00000544040 RHODO00212 210 aa12.36□□□□□ -0.43
CHD4-210ENST00000544040 IGHV2-70P01814 119 aa12.36□□□□□ -0.43
CHD4-210ENST00000544040 NBL1P41271 181 aa12.36□□□□□ -0.43
CHD4-210ENST00000544040 FAM110DQ8TAY7 271 aaPredicted RBP12.36□□□□□ -0.43
CHD4-210ENST00000544040 NTN5Q8WTR8 489 aaPredicted RBP12.36□□□□□ -0.43
CHD4-210ENST00000544040 TMEM14BQ9NUH8 114 aa12.36□□□□□ -0.43
CHD4-210ENST00000544040 C3orf56Q8N813 242 aa12.35□□□□□ -0.43
CHD4-210ENST00000544040 ZC2HC1AQ96GY0 325 aa12.35□□□□□ -0.43
CHD4-210ENST00000544040 LGALS9BQ3B8N2 356 aa12.35□□□□□ -0.43
CHD4-210ENST00000544040 LGALS9CQ6DKI2 356 aa12.35□□□□□ -0.43
CHD4-210ENST00000544040 NDUFA4L2Q9NRX3 87 aa12.35□□□□□ -0.43
CHD4-210ENST00000544040 LHBP01229 141 aa12.35□□□□□ -0.43
CHD4-210ENST00000544040 KLF2Q9Y5W3 355 aaPredicted RBP12.35□□□□□ -0.43
CHD4-210ENST00000544040 LRRK1Q38SD2 2015 aa12.35□□□□□ -0.43
CHD4-210ENST00000544040 FREM3P0C091 2139 aa12.35□□□□□ -0.43
CHD4-210ENST00000544040 B3GALT5-AS1P59052 145 aa12.35□□□□□ -0.43
CHD4-210ENST00000544040 RNF114Q9Y508 228 aa12.35□□□□□ -0.43
CHD4-210ENST00000544040 CASP8AP2Q9UKL3 1982 aa12.34□□□□□ -0.43
CHD4-210ENST00000544040 SPANXA1Q9NS26 97 aa12.34□□□□□ -0.43
CHD4-210ENST00000544040 IGF2BP2-AS1Q96M15 143 aa12.34□□□□□ -0.43
CHD4-210ENST00000544040 TRAV13-2A0A0B4J235 113 aa12.34□□□□□ -0.43
CHD4-210ENST00000544040 ANGP03950 147 aaKnown RBP12.34□□□□□ -0.43
CHD4-210ENST00000544040 AHCTF1Q8WYP5 2266 aa12.34□□□□□ -0.43
CHD4-210ENST00000544040 Q6ZS49 121 aa12.34□□□□□ -0.43
CHD4-210ENST00000544040 RTTNQ86VV8 2226 aa12.34□□□□□ -0.43
CHD4-210ENST00000544040 ARID2Q68CP9 1835 aa12.34□□□□□ -0.43
CHD4-210ENST00000544040 J3QQQ9 107 aa12.34□□□□□ -0.43
CHD4-210ENST00000544040 PRR25Q96S07 402 aa12.34□□□□□ -0.43
CHD4-210ENST00000544040 TPSG1Q9NRR2 321 aa12.34□□□□□ -0.43
CHD4-210ENST00000544040 CSRP1P21291 193 aaKnown RBP12.33□□□□□ -0.44
CHD4-210ENST00000544040 B5MCH6 92 aa12.33□□□□□ -0.44
CHD4-210ENST00000544040 MDS2Q8NDY4 140 aa12.33□□□□□ -0.44
CHD4-210ENST00000544040 CCL25O15444 150 aa12.33□□□□□ -0.44
CHD4-210ENST00000544040 C12orf74Q32Q52 190 aa12.33□□□□□ -0.44
CHD4-210ENST00000544040 IGHV4-28A0A0C4DH34 117 aa12.32□□□□□ -0.44
CHD4-210ENST00000544040 ANKHD1-EIF4EBP3H7C0V5 636 aaPredicted RBP12.32□□□□□ -0.44
CHD4-210ENST00000544040 NDUFS7O75251 213 aa12.32□□□□□ -0.44
CHD4-210ENST00000544040 CDKN1BP46527 198 aa12.32□□□□□ -0.44
CHD4-210ENST00000544040 YPEL3P61236 119 aaPredicted RBP12.32□□□□□ -0.44
CHD4-210ENST00000544040 CFHR4Q92496 578 aa12.32□□□□□ -0.44
CHD4-210ENST00000544040 XCL1P47992 114 aa12.32□□□□□ -0.44
CHD4-210ENST00000544040 SMIM2Q9BVW6 85 aa12.32□□□□□ -0.44
CHD4-210ENST00000544040 ABCA7Q8IZY2 2146 aa12.32□□□□□ -0.44
CHD4-210ENST00000544040 HLA-DMBP28068 263 aa12.31□□□□□ -0.44
CHD4-210ENST00000544040 TMEM258P61165 79 aa12.31□□□□□ -0.44
CHD4-210ENST00000544040 H3BRN7 92 aa12.31□□□□□ -0.44
CHD4-210ENST00000544040 SPRY2O43597 315 aa12.31□□□□□ -0.44
CHD4-210ENST00000544040 Q71RC1 249 aaPredicted RBP12.31□□□□□ -0.44
CHD4-210ENST00000544040 F8VRH5 84 aa12.3□□□□□ -0.44
CHD4-210ENST00000544040 ARTNQ5T4W7 220 aa12.3□□□□□ -0.44
CHD4-210ENST00000544040 IGKV2D-29A0A075B6S2 120 aaPredicted RBP12.3□□□□□ -0.44
CHD4-210ENST00000544040 IGKV2-29A2NJV5 120 aaPredicted RBP12.3□□□□□ -0.44
CHD4-210ENST00000544040 EGR2P11161 476 aaPredicted RBP12.3□□□□□ -0.44
CHD4-210ENST00000544040 MSMBP08118 114 aa12.3□□□□□ -0.44
CHD4-210ENST00000544040 A0A0J9YY99 117 aa12.3□□□□□ -0.44
CHD4-210ENST00000544040 BAALC-AS2P0C853 105 aa12.3□□□□□ -0.44
CHD4-210ENST00000544040 ZNF833PQ6ZTB9 187 aa12.3□□□□□ -0.44
CHD4-210ENST00000544040 HERVK_113P63121 156 aa12.29□□□□□ -0.44
CHD4-210ENST00000544040 FANCMQ8IYD8 2048 aa12.29□□□□□ -0.44
CHD4-210ENST00000544040 GREB1Q4ZG55 1949 aa12.29□□□□□ -0.44
CHD4-210ENST00000544040 UBE2E1P51965 193 aa12.29□□□□□ -0.44
CHD4-210ENST00000544040 PRR30Q53SZ7 412 aaPredicted RBP12.29□□□□□ -0.44
CHD4-210ENST00000544040 Q6ZQT7 251 aa12.29□□□□□ -0.44
CHD4-210ENST00000544040 TNS1Q9HBL0 1735 aaKnown RBP12.29□□□□□ -0.44
CHD4-210ENST00000544040 LOC285556D6RIA3 1793 aa12.29□□□□□ -0.44
CHD4-210ENST00000544040 TAF1LQ8IZX4 1826 aa12.29□□□□□ -0.44
CHD4-210ENST00000544040 C17orf77Q96MU5 243 aa12.28□□□□□ -0.44
CHD4-210ENST00000544040 FAM186AA6NE01 2351 aa12.28□□□□□ -0.44
CHD4-210ENST00000544040 IGKV1OR2-108A0A075B7D4 117 aa12.28□□□□□ -0.44
CHD4-210ENST00000544040 GNRH2O43555 120 aa12.28□□□□□ -0.44
CHD4-210ENST00000544040 DIAPH2-AS1Q14236 149 aa12.28□□□□□ -0.44
CHD4-210ENST00000544040 C17orf58Q2M2W7 97 aa12.28□□□□□ -0.44
CHD4-210ENST00000544040 K7EMI3 77 aa12.28□□□□□ -0.44
CHD4-210ENST00000544040 UBE2BP63146 152 aa12.28□□□□□ -0.44
CHD4-210ENST00000544040 FAM120AOSQ5T036 256 aa12.28□□□□□ -0.44
CHD4-210ENST00000544040 CDPF1Q6NVV7 123 aa12.28□□□□□ -0.44
CHD4-210ENST00000544040 C1orf43Q9BWL3 253 aa12.28□□□□□ -0.44
CHD4-210ENST00000544040 LRRC37AA6NMS7 1700 aa12.28□□□□□ -0.44
CHD4-210ENST00000544040 PLXNA1Q9UIW2 1896 aa12.28□□□□□ -0.44
CHD4-210ENST00000544040 IGHV1-69DA0A0B4J2H0 117 aa12.28□□□□□ -0.44
CHD4-210ENST00000544040 C22orf46C9J442 243 aa12.28□□□□□ -0.44
CHD4-210ENST00000544040 IGHV1-69P01742 117 aa12.28□□□□□ -0.44
CHD4-210ENST00000544040 ZNF134P52741 427 aa12.28□□□□□ -0.44
CHD4-210ENST00000544040 WDR86Q86TI4 376 aa12.28□□□□□ -0.44
CHD4-210ENST00000544040 FER1L5A0AVI2 2057 aa12.27□□□□□ -0.44
CHD4-210ENST00000544040 K7EN84 100 aa12.27□□□□□ -0.45
CHD4-210ENST00000544040 PCP2Q8IVA1 136 aa12.27□□□□□ -0.45
CHD4-210ENST00000544040 BRCA1P38398 1863 aaKnown RBP12.27□□□□□ -0.45
CHD4-210ENST00000544040 F6UB75 175 aa12.27□□□□□ -0.45
CHD4-210ENST00000544040 IGKV2D-24A0A075B6R9 120 aa12.26□□□□□ -0.45
CHD4-210ENST00000544040 IGHV2-5P01817 119 aa12.26□□□□□ -0.45
CHD4-210ENST00000544040 SH2D6Q7Z4S9 175 aa12.26□□□□□ -0.45
CHD4-210ENST00000544040 FXYD5Q96DB9 178 aa12.26□□□□□ -0.45
CHD4-210ENST00000544040 Q9H8V8 135 aa12.26□□□□□ -0.45
CHD4-210ENST00000544040 ORMDL1Q9P0S3 153 aa12.26□□□□□ -0.45
CHD4-210ENST00000544040 YLPM1P49750 1951 aaKnown RBP12.26□□□□□ -0.45
CHD4-210ENST00000544040 IGLV2-23P01705 113 aa12.26□□□□□ -0.45
Retrieved 100 of 20,778 RNA–protein pairs in 46.8 ms