RNA–Protein interactions for RNA: ENST00000525293.5

CD44-216, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 3

Gene CD44, Length 569 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-216ENST00000525293 MYO5CQ9NQX4 1742 aa1.58□□□□□ -2.16
CD44-216ENST00000525293 DOCK6Q96HP0 2047 aa1.58□□□□□ -2.16
CD44-216ENST00000525293 TRAV2A0A0B4J234 112 aa1.58□□□□□ -2.16
CD44-216ENST00000525293 IGHV1OR15-9A0A0B4J2B8 117 aa1.58□□□□□ -2.16
CD44-216ENST00000525293 A6NN06 94 aa1.58□□□□□ -2.16
CD44-216ENST00000525293 SNRPGP15A8MWD9 76 aa1.58□□□□□ -2.16
CD44-216ENST00000525293 C9JCJ5 164 aa1.58□□□□□ -2.16
CD44-216ENST00000525293 C17orf112F2Z3M2 114 aa1.58□□□□□ -2.16
CD44-216ENST00000525293 SSSCA1O60232 199 aa1.58□□□□□ -2.16
CD44-216ENST00000525293 COX7A2P2O60397 106 aa1.58□□□□□ -2.16
CD44-216ENST00000525293 SERF1AO75920 110 aa1.58□□□□□ -2.16
CD44-216ENST00000525293 LTAP01374 205 aa1.58□□□□□ -2.16
CD44-216ENST00000525293 SRP19P09132 144 aaKnown RBP1.58□□□□□ -2.16
CD44-216ENST00000525293 ASAH2BP0C7U1 165 aa1.58□□□□□ -2.16
CD44-216ENST00000525293 SMIM13P0DJ93 91 aa1.58□□□□□ -2.16
CD44-216ENST00000525293 FUSP35637 526 aaKnown RBP eCLIP1.58□□□□□ -2.16
CD44-216ENST00000525293 EFNA4P52798 201 aa1.58□□□□□ -2.16
CD44-216ENST00000525293 DSCR4P56555 118 aaPredicted RBP1.58□□□□□ -2.16
CD44-216ENST00000525293 KRTAP10-1P60331 282 aa1.58□□□□□ -2.16
CD44-216ENST00000525293 HERVK_113P61574 105 aa1.58□□□□□ -2.16
CD44-216ENST00000525293 UBE2G1P62253 170 aa1.58□□□□□ -2.16
CD44-216ENST00000525293 BLCAPP62952 87 aa1.58□□□□□ -2.16
CD44-216ENST00000525293 UBE2BP63146 152 aa1.58□□□□□ -2.16
CD44-216ENST00000525293 RPL18Q07020 188 aaKnown RBP1.58□□□□□ -2.16
CD44-216ENST00000525293 IL17AQ16552 155 aa1.58□□□□□ -2.16
CD44-216ENST00000525293 FAM78AQ5JUQ0 283 aa1.58□□□□□ -2.16
CD44-216ENST00000525293 CFAP126Q5VTH2 177 aa1.58□□□□□ -2.16
CD44-216ENST00000525293 C11orf71Q6IPW1 123 aa1.58□□□□□ -2.16
CD44-216ENST00000525293 GUSBP11Q6P575 273 aa1.58□□□□□ -2.16
CD44-216ENST00000525293 SOSTDC1Q6X4U4 206 aa1.58□□□□□ -2.16
CD44-216ENST00000525293 TMEM136Q6ZRR5 245 aa1.58□□□□□ -2.16
CD44-216ENST00000525293 C7orf65Q6ZTY9 151 aa1.58□□□□□ -2.16
CD44-216ENST00000525293 OR5AS1Q8N127 324 aa1.58□□□□□ -2.16
CD44-216ENST00000525293 SIGLECL1Q8N7X8 197 aa1.58□□□□□ -2.16
CD44-216ENST00000525293 DAND5Q8N907 189 aa1.58□□□□□ -2.16
CD44-216ENST00000525293 NKAPP1Q8N9T2 125 aa1.58□□□□□ -2.16
CD44-216ENST00000525293 FAM103A1Q9BTL3 118 aaKnown RBP1.58□□□□□ -2.16
CD44-216ENST00000525293 NPCDR1Q9BY65 106 aa1.58□□□□□ -2.16
CD44-216ENST00000525293 CST11Q9H112 138 aa1.58□□□□□ -2.16
CD44-216ENST00000525293 NXT2Q9NPJ8 142 aaKnown RBP1.58□□□□□ -2.16
CD44-216ENST00000525293 CCL28Q9NRJ3 127 aa1.58□□□□□ -2.16
CD44-216ENST00000525293 TMEM242Q9NWH2 141 aa1.58□□□□□ -2.16
CD44-216ENST00000525293 RABAC1Q9UI14 185 aa1.58□□□□□ -2.16
CD44-216ENST00000525293 FBN3Q75N90 2809 aa1.58□□□□□ -2.16
CD44-216ENST00000525293 KIF20BQ96Q89 1820 aa1.58□□□□□ -2.16
CD44-216ENST00000525293 FER1L6Q2WGJ9 1857 aa1.58□□□□□ -2.16
CD44-216ENST00000525293 DOCK5Q9H7D0 1870 aa1.58□□□□□ -2.16
CD44-216ENST00000525293 RIMBP3CA6NJZ7 1639 aa1.58□□□□□ -2.16
CD44-216ENST00000525293 RIMBP3BA6NNM3 1639 aa1.58□□□□□ -2.16
CD44-216ENST00000525293 KIF14Q15058 1648 aa1.58□□□□□ -2.16
CD44-216ENST00000525293 RIMBP3Q9UFD9 1639 aa1.58□□□□□ -2.16
CD44-216ENST00000525293 NCKAP5O14513 1909 aa1.58□□□□□ -2.16
CD44-216ENST00000525293 NAV2Q8IVL1 2488 aa1.58□□□□□ -2.16
CD44-216ENST00000525293 WIZO95785 1651 aa1.58□□□□□ -2.16
CD44-216ENST00000525293 ROBO1Q9Y6N7 1651 aa1.58□□□□□ -2.16
CD44-216ENST00000525293 TRIP11Q15643 1979 aa1.58□□□□□ -2.16
CD44-216ENST00000525293 CDC42BPAQ5VT25 1732 aa1.57□□□□□ -2.16
CD44-216ENST00000525293 MARF1Q9Y4F3 1742 aaKnown RBP1.57□□□□□ -2.16
CD44-216ENST00000525293 PXDNLA1KZ92 1463 aa1.57□□□□□ -2.16
CD44-216ENST00000525293 C1orf167Q5SNV9 1468 aa1.57□□□□□ -2.16
CD44-216ENST00000525293 RALGAPBQ86X10 1494 aa1.57□□□□□ -2.16
CD44-216ENST00000525293 STRCQ7RTU9 1775 aa1.57□□□□□ -2.16
CD44-216ENST00000525293 CDK13Q14004 1512 aaKnown RBP1.57□□□□□ -2.16
CD44-216ENST00000525293 IGLV3-9A0A075B6K5 115 aa1.57□□□□□ -2.16
CD44-216ENST00000525293 IGHV3OR16-12A0A075B7B8 117 aa1.57□□□□□ -2.16
CD44-216ENST00000525293 IGHV1OR15-1A0A075B7D0 117 aa1.57□□□□□ -2.16
CD44-216ENST00000525293 TRAV17A0A0B4J275 112 aa1.57□□□□□ -2.16
CD44-216ENST00000525293 IGHV3-35A0A0C4DH35 117 aa1.57□□□□□ -2.16
CD44-216ENST00000525293 CCL16O15467 120 aa1.57□□□□□ -2.16
CD44-216ENST00000525293 IGKV1-39P01597 117 aa1.57□□□□□ -2.16
CD44-216ENST00000525293 IGKV1D-39P04432 117 aa1.57□□□□□ -2.16
CD44-216ENST00000525293 PRM2P04554 102 aa1.57□□□□□ -2.16
CD44-216ENST00000525293 SCGB1C2P0DMR2 95 aa1.57□□□□□ -2.16
CD44-216ENST00000525293 IGHV3-43DP0DP04 118 aa1.57□□□□□ -2.16
CD44-216ENST00000525293 RNASE2P10153 161 aaKnown RBP1.57□□□□□ -2.16
CD44-216ENST00000525293 IGHV1-2P23083 117 aa1.57□□□□□ -2.16
CD44-216ENST00000525293 MPV17P39210 176 aa1.57□□□□□ -2.16
CD44-216ENST00000525293 SYNJ2BPP57105 145 aa1.57□□□□□ -2.16
CD44-216ENST00000525293 PCBD1P61457 104 aa1.57□□□□□ -2.16
CD44-216ENST00000525293 CCL20P78556 96 aa1.57□□□□□ -2.16
CD44-216ENST00000525293 CCL8P80075 99 aa1.57□□□□□ -2.16
CD44-216ENST00000525293 LCE1CQ5T751 118 aa1.57□□□□□ -2.16
CD44-216ENST00000525293 LCE1BQ5T7P3 118 aa1.57□□□□□ -2.16
CD44-216ENST00000525293 LYPD5Q6UWN5 251 aa1.57□□□□□ -2.16
CD44-216ENST00000525293 PATE2Q6UY27 113 aa1.57□□□□□ -2.16
CD44-216ENST00000525293 ZFP2Q6ZN57 461 aa1.57□□□□□ -2.16
CD44-216ENST00000525293 COMMD6Q7Z4G1 85 aa1.57□□□□□ -2.16
CD44-216ENST00000525293 ADM2Q7Z4H4 148 aa1.57□□□□□ -2.16
CD44-216ENST00000525293 C5orf38Q86SI9 138 aa1.57□□□□□ -2.16
CD44-216ENST00000525293 LINC01555Q8NAE3 123 aa1.57□□□□□ -2.16
CD44-216ENST00000525293 LINC01006Q8NI28 216 aa1.57□□□□□ -2.16
CD44-216ENST00000525293 COPS9Q8WXC6 57 aa1.57□□□□□ -2.16
CD44-216ENST00000525293 AQP3Q92482 292 aa1.57□□□□□ -2.16
CD44-216ENST00000525293 DIRC1Q969H9 104 aa1.57□□□□□ -2.16
CD44-216ENST00000525293 ZNF714Q96N38 554 aa1.57□□□□□ -2.16
CD44-216ENST00000525293 MCEEQ96PE7 176 aa1.57□□□□□ -2.16
CD44-216ENST00000525293 TTTY13Q9BZ97 58 aa1.57□□□□□ -2.16
CD44-216ENST00000525293 IL36BQ9NZH7 164 aa1.57□□□□□ -2.16
CD44-216ENST00000525293 SLC25A15Q9Y619 301 aa1.57□□□□□ -2.16
CD44-216ENST00000525293 MYH6P13533 1939 aa1.57□□□□□ -2.16
Retrieved 100 of 20,778 RNA–protein pairs in 36 ms