RNA–Protein interactions for RNA: ENST00000512946.5

LIMCH1-217, Transcript of LIM and calponin homology domains 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene LIMCH1, Length 5,057 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-217ENST00000512946 RTTNQ86VV8 2226 aa8.97□□□□□ -0.97
LIMCH1-217ENST00000512946 KIAA1551Q9HCM1 1747 aa8.97□□□□□ -0.97
LIMCH1-217ENST00000512946 PRR19A6NJB7 356 aa8.97□□□□□ -0.97
LIMCH1-217ENST00000512946 EFNA4P52798 201 aa8.97□□□□□ -0.97
LIMCH1-217ENST00000512946 C3orf36Q3SXR2 165 aa8.97□□□□□ -0.97
LIMCH1-217ENST00000512946 TMEM219Q86XT9 240 aa8.97□□□□□ -0.97
LIMCH1-217ENST00000512946 C10orf105Q8TEF2 133 aa8.97□□□□□ -0.97
LIMCH1-217ENST00000512946 ANKHD1-EIF4EBP3H7C0V5 636 aaPredicted RBP8.97□□□□□ -0.97
LIMCH1-217ENST00000512946 IGLV3-19P01714 112 aa8.97□□□□□ -0.97
LIMCH1-217ENST00000512946 PKD1L3Q7Z443 1732 aa8.97□□□□□ -0.97
LIMCH1-217ENST00000512946 LINC00311Q8N616 119 aa8.97□□□□□ -0.97
LIMCH1-217ENST00000512946 E9PLD3 99 aa8.97□□□□□ -0.97
LIMCH1-217ENST00000512946 TRBV12-3P01733 135 aa8.97□□□□□ -0.97
LIMCH1-217ENST00000512946 RSPO4Q2I0M5 234 aaPredicted RBP8.97□□□□□ -0.97
LIMCH1-217ENST00000512946 C8orf49Q96NF6 230 aa8.97□□□□□ -0.97
LIMCH1-217ENST00000512946 UBE2AP49459 152 aa8.96□□□□□ -0.97
LIMCH1-217ENST00000512946 ZNF134P52741 427 aa8.96□□□□□ -0.97
LIMCH1-217ENST00000512946 PRR20EP86478 221 aa8.96□□□□□ -0.97
LIMCH1-217ENST00000512946 PRR20CP86479 221 aa8.96□□□□□ -0.97
LIMCH1-217ENST00000512946 PRR20DP86480 221 aa8.96□□□□□ -0.97
LIMCH1-217ENST00000512946 PRR20BP86481 221 aa8.96□□□□□ -0.97
LIMCH1-217ENST00000512946 PRR20AP86496 221 aa8.96□□□□□ -0.97
LIMCH1-217ENST00000512946 ZNRF2Q8NHG8 242 aa8.96□□□□□ -0.97
LIMCH1-217ENST00000512946 VOPP1Q96AW1 172 aa8.96□□□□□ -0.97
LIMCH1-217ENST00000512946 PATE3B3GLJ2 98 aa8.96□□□□□ -0.97
LIMCH1-217ENST00000512946 BUB3O43684 328 aa8.96□□□□□ -0.97
LIMCH1-217ENST00000512946 HIGD2BQ4VC39 106 aa8.96□□□□□ -0.97
LIMCH1-217ENST00000512946 SPTSSBQ8NFR3 76 aa8.96□□□□□ -0.97
LIMCH1-217ENST00000512946 SND1-IT1Q9HBX3 110 aa8.96□□□□□ -0.97
LIMCH1-217ENST00000512946 MSRB2Q9Y3D2 182 aa8.96□□□□□ -0.97
LIMCH1-217ENST00000512946 GAFA1Q96PS6 74 aa8.96□□□□□ -0.98
LIMCH1-217ENST00000512946 A0A087WV48 116 aa8.96□□□□□ -0.98
LIMCH1-217ENST00000512946 C14orf132Q9NPU4 83 aa8.96□□□□□ -0.98
LIMCH1-217ENST00000512946 PAPPA2Q9BXP8 1791 aa8.95□□□□□ -0.98
LIMCH1-217ENST00000512946 E9PLN8 166 aa8.95□□□□□ -0.98
LIMCH1-217ENST00000512946 DKK1O94907 266 aa8.95□□□□□ -0.98
LIMCH1-217ENST00000512946 ZNF672Q499Z4 452 aaPredicted RBP8.95□□□□□ -0.98
LIMCH1-217ENST00000512946 SPATA12Q7Z6I5 190 aa8.95□□□□□ -0.98
LIMCH1-217ENST00000512946 RNF152Q8N8N0 203 aa8.95□□□□□ -0.98
LIMCH1-217ENST00000512946 FXYD5Q96DB9 178 aa8.95□□□□□ -0.98
LIMCH1-217ENST00000512946 ZC2HC1AQ96GY0 325 aa8.95□□□□□ -0.98
LIMCH1-217ENST00000512946 PRR15LQ9BU68 103 aa8.95□□□□□ -0.98
LIMCH1-217ENST00000512946 ABCA1O95477 2261 aa8.95□□□□□ -0.98
LIMCH1-217ENST00000512946 BCORQ6W2J9 1755 aa8.95□□□□□ -0.98
LIMCH1-217ENST00000512946 MBD3L2BA0A1B0GVZ6 204 aaPredicted RBP8.95□□□□□ -0.98
LIMCH1-217ENST00000512946 ANKRD39Q53RE8 183 aa8.95□□□□□ -0.98
LIMCH1-217ENST00000512946 AHCTF1Q8WYP5 2266 aa8.95□□□□□ -0.98
LIMCH1-217ENST00000512946 LGALS9O00182 355 aa8.95□□□□□ -0.98
LIMCH1-217ENST00000512946 RS1O15537 224 aa8.95□□□□□ -0.98
LIMCH1-217ENST00000512946 C1orf195Q5TG92 126 aa8.95□□□□□ -0.98
LIMCH1-217ENST00000512946 PTH2Q96A98 100 aa8.95□□□□□ -0.98
LIMCH1-217ENST00000512946 QSER1Q2KHR3 1735 aa8.94□□□□□ -0.98
LIMCH1-217ENST00000512946 ETDCA0A1B0GVM5 59 aa8.94□□□□□ -0.98
LIMCH1-217ENST00000512946 CD59P13987 128 aa8.94□□□□□ -0.98
LIMCH1-217ENST00000512946 DEFB131AP59861 70 aa8.94□□□□□ -0.98
LIMCH1-217ENST00000512946 NDPQ00604 133 aa8.94□□□□□ -0.98
LIMCH1-217ENST00000512946 FXYD2P54710 66 aa8.94□□□□□ -0.98
LIMCH1-217ENST00000512946 C20orf204Q6ZNR8 217 aa8.94□□□□□ -0.98
LIMCH1-217ENST00000512946 Q8N1Y9 231 aa8.94□□□□□ -0.98
LIMCH1-217ENST00000512946 TIMM17AQ99595 171 aa8.94□□□□□ -0.98
LIMCH1-217ENST00000512946 RNF114Q9Y508 228 aa8.94□□□□□ -0.98
LIMCH1-217ENST00000512946 CFHR1Q03591 330 aa8.94□□□□□ -0.98
LIMCH1-217ENST00000512946 LAMB2P55268 1798 aa8.94□□□□□ -0.98
LIMCH1-217ENST00000512946 A0A1W2PRX2 142 aa8.94□□□□□ -0.98
LIMCH1-217ENST00000512946 B4DSR2 109 aa8.94□□□□□ -0.98
LIMCH1-217ENST00000512946 GATA3P23771 443 aa8.93□□□□□ -0.98
LIMCH1-217ENST00000512946 PRR31Q5SQ13 230 aa8.93□□□□□ -0.98
LIMCH1-217ENST00000512946 CD24P25063 80 aa8.93□□□□□ -0.98
LIMCH1-217ENST00000512946 MRPS36P82909 103 aaKnown RBP8.93□□□□□ -0.98
LIMCH1-217ENST00000512946 ZNF833PQ6ZTB9 187 aa8.93□□□□□ -0.98
LIMCH1-217ENST00000512946 HEATR1Q9H583 2144 aaKnown RBP8.93□□□□□ -0.98
LIMCH1-217ENST00000512946 TRAV4A0A0B4J268 109 aa8.93□□□□□ -0.98
LIMCH1-217ENST00000512946 C11orf86A6NJI1 115 aa8.93□□□□□ -0.98
LIMCH1-217ENST00000512946 DOCK2Q92608 1830 aa8.93□□□□□ -0.98
LIMCH1-217ENST00000512946 OTOFQ9HC10 1997 aa8.93□□□□□ -0.98
LIMCH1-217ENST00000512946 H3BUA1 57 aa8.92□□□□□ -0.98
LIMCH1-217ENST00000512946 CHD5Q8TDI0 1954 aa8.92□□□□□ -0.98
LIMCH1-217ENST00000512946 ARAP2Q8WZ64 1704 aa8.92□□□□□ -0.98
LIMCH1-217ENST00000512946 C5orf63A6NC05 138 aa8.92□□□□□ -0.98
LIMCH1-217ENST00000512946 WIPF3A6NGB9 483 aa8.92□□□□□ -0.98
LIMCH1-217ENST00000512946 OVOL3O00110 214 aa8.92□□□□□ -0.98
LIMCH1-217ENST00000512946 SVILO95425 2214 aa8.92□□□□□ -0.98
LIMCH1-217ENST00000512946 IGKV1D-17A0A075B6S4 117 aa8.92□□□□□ -0.98
LIMCH1-217ENST00000512946 PRR30Q53SZ7 412 aaPredicted RBP8.92□□□□□ -0.98
LIMCH1-217ENST00000512946 MED14OSP0DP75 135 aa8.91□□□□□ -0.98
LIMCH1-217ENST00000512946 ANKRD36A6QL64 1941 aa8.91□□□□□ -0.98
LIMCH1-217ENST00000512946 RALGAPA1Q6GYQ0 2036 aa8.91□□□□□ -0.98
LIMCH1-217ENST00000512946 FAM120AOSQ5T036 256 aa8.91□□□□□ -0.98
LIMCH1-217ENST00000512946 COX7B2Q8TF08 81 aa8.91□□□□□ -0.98
LIMCH1-217ENST00000512946 UBE2E2Q96LR5 201 aa8.91□□□□□ -0.98
LIMCH1-217ENST00000512946 KIF26BQ2KJY2 2108 aa8.91□□□□□ -0.98
LIMCH1-217ENST00000512946 DEFB130BP0DP73 79 aa8.91□□□□□ -0.98
LIMCH1-217ENST00000512946 DEFB130AP0DP74 79 aa8.91□□□□□ -0.98
LIMCH1-217ENST00000512946 GGNQ86UU5 652 aa8.91□□□□□ -0.98
LIMCH1-217ENST00000512946 TMEM61Q8N0U2 210 aa8.91□□□□□ -0.98
LIMCH1-217ENST00000512946 BTAF1O14981 1849 aa8.91□□□□□ -0.98
LIMCH1-217ENST00000512946 K7EN84 100 aa8.91□□□□□ -0.98
LIMCH1-217ENST00000512946 NDUFA7O95182 113 aa8.91□□□□□ -0.98
LIMCH1-217ENST00000512946 MLANAQ16655 118 aa8.91□□□□□ -0.98
LIMCH1-217ENST00000512946 IGFL4Q6B9Z1 124 aa8.91□□□□□ -0.98
Retrieved 100 of 20,778 RNA–protein pairs in 34.1 ms