RNA–Protein interactions for RNA: ENST00000493341.1

VPS13A-212, Transcript of vacuolar protein sorting 13 homolog A, humanhuman

TSL 2

Gene VPS13A, Length 2,001 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13A-212ENST00000493341 HRCT1Q6UXD1 115 aa2.34□□□□□ -2.03
VPS13A-212ENST00000493341 DEFB128Q7Z7B8 93 aa2.34□□□□□ -2.03
VPS13A-212ENST00000493341 ZC2HC1AQ96GY0 325 aa2.34□□□□□ -2.03
VPS13A-212ENST00000493341 YIPF3Q9GZM5 350 aa2.34□□□□□ -2.03
VPS13A-212ENST00000493341 TMEM126AQ9H061 195 aa2.34□□□□□ -2.03
VPS13A-212ENST00000493341 POPDC3Q9HBV1 291 aa2.34□□□□□ -2.03
VPS13A-212ENST00000493341 MED31Q9Y3C7 131 aa2.34□□□□□ -2.03
VPS13A-212ENST00000493341 GABARAPH6UMI1 98 aa2.34□□□□□ -2.04
VPS13A-212ENST00000493341 UBBP0CG47 229 aa2.34□□□□□ -2.04
VPS13A-212ENST00000493341 MYL5Q02045 173 aa2.34□□□□□ -2.04
VPS13A-212ENST00000493341 PLCXD2Q0VAA5 305 aa2.34□□□□□ -2.04
VPS13A-212ENST00000493341 DHFR2Q86XF0 187 aa2.34□□□□□ -2.04
VPS13A-212ENST00000493341 LINC00471Q8N535 108 aa2.34□□□□□ -2.04
VPS13A-212ENST00000493341 OR4D11Q8NGI4 311 aa2.34□□□□□ -2.04
VPS13A-212ENST00000493341 MAFIPQ8WZ33 124 aa2.34□□□□□ -2.04
VPS13A-212ENST00000493341 SLC25A21Q9BQT8 299 aaPredicted RBP2.34□□□□□ -2.04
VPS13A-212ENST00000493341 TIMM21Q9BVV7 248 aa2.34□□□□□ -2.04
VPS13A-212ENST00000493341 OTORQ9NRC9 128 aa2.34□□□□□ -2.04
VPS13A-212ENST00000493341 GSKIPQ9P0R6 139 aa2.34□□□□□ -2.04
VPS13A-212ENST00000493341 TRIOBPQ9H2D6 2365 aa2.34□□□□□ -2.04
VPS13A-212ENST00000493341 OBSL1O75147 1896 aa2.33□□□□□ -2.04
VPS13A-212ENST00000493341 TET1Q8NFU7 2136 aa2.33□□□□□ -2.04
VPS13A-212ENST00000493341 ZNF705FA8MVS1 300 aaPredicted RBP2.33□□□□□ -2.04
VPS13A-212ENST00000493341 H7BYZ3 331 aa2.33□□□□□ -2.04
VPS13A-212ENST00000493341 NAPSAO96009 420 aa2.33□□□□□ -2.04
VPS13A-212ENST00000493341 OR10J4P0C629 311 aa2.33□□□□□ -2.04
VPS13A-212ENST00000493341 BCL2P10415 239 aa2.33□□□□□ -2.04
VPS13A-212ENST00000493341 POLR2HP52434 150 aaKnown RBP2.33□□□□□ -2.04
VPS13A-212ENST00000493341 PRR15Q8IV56 129 aa2.33□□□□□ -2.04
VPS13A-212ENST00000493341 LZICQ8WZA0 190 aa2.33□□□□□ -2.04
VPS13A-212ENST00000493341 BCL2L10Q9HD36 194 aa2.33□□□□□ -2.04
VPS13A-212ENST00000493341 NHP2Q9NX24 153 aaKnown RBP2.33□□□□□ -2.04
VPS13A-212ENST00000493341 RNF11Q9Y3C5 154 aa2.33□□□□□ -2.04
VPS13A-212ENST00000493341 MKI67P46013 3256 aaKnown RBP2.33□□□□□ -2.04
VPS13A-212ENST00000493341 BRCA2P51587 3418 aa2.33□□□□□ -2.04
VPS13A-212ENST00000493341 DNAH12Q6ZR08 3092 aa2.33□□□□□ -2.04
VPS13A-212ENST00000493341 TRAV3A0A0B4J244 114 aa2.32□□□□□ -2.04
VPS13A-212ENST00000493341 K7ERJ3 54 aa2.32□□□□□ -2.04
VPS13A-212ENST00000493341 TIMM17BO60830 172 aa2.32□□□□□ -2.04
VPS13A-212ENST00000493341 CST7O76096 145 aa2.32□□□□□ -2.04
VPS13A-212ENST00000493341 MGST1P10620 155 aaKnown RBP2.32□□□□□ -2.04
VPS13A-212ENST00000493341 ARPP19P56211 112 aa2.32□□□□□ -2.04
VPS13A-212ENST00000493341 SMCO1Q147U7 214 aa2.32□□□□□ -2.04
VPS13A-212ENST00000493341 ZNF714Q96N38 554 aa2.32□□□□□ -2.04
VPS13A-212ENST00000493341 SPANXA1Q9NS26 97 aa2.32□□□□□ -2.04
VPS13A-212ENST00000493341 TAS2R7Q9NYW3 318 aa2.32□□□□□ -2.04
VPS13A-212ENST00000493341 MPDZO75970 2070 aa2.32□□□□□ -2.04
VPS13A-212ENST00000493341 HLA-EP13747 358 aa2.32□□□□□ -2.04
VPS13A-212ENST00000493341 FUSP35637 526 aaKnown RBP eCLIP2.32□□□□□ -2.04
VPS13A-212ENST00000493341 S100A12P80511 92 aa2.32□□□□□ -2.04
VPS13A-212ENST00000493341 C3orf56Q8N813 242 aa2.32□□□□□ -2.04
VPS13A-212ENST00000493341 NAT8BQ9UHF3 227 aa2.32□□□□□ -2.04
VPS13A-212ENST00000493341 NUP210LQ5VU65 1888 aa2.32□□□□□ -2.04
VPS13A-212ENST00000493341 TRANK1O15050 2925 aa2.31□□□□□ -2.04
VPS13A-212ENST00000493341 IGLV3-9A0A075B6K5 115 aa2.31□□□□□ -2.04
VPS13A-212ENST00000493341 TRAV1-1A0A0B4J248 108 aa2.31□□□□□ -2.04
VPS13A-212ENST00000493341 J3KT08 172 aa2.31□□□□□ -2.04
VPS13A-212ENST00000493341 GADD45GO95257 159 aa2.31□□□□□ -2.04
VPS13A-212ENST00000493341 DHFRP00374 187 aa2.31□□□□□ -2.04
VPS13A-212ENST00000493341 RPS3P23396 243 aaKnown RBP eCLIP2.31□□□□□ -2.04
VPS13A-212ENST00000493341 OR4K15Q8NH41 348 aa2.31□□□□□ -2.04
VPS13A-212ENST00000493341 TTTY12Q9BZ98 90 aa2.31□□□□□ -2.04
VPS13A-212ENST00000493341 CST9LQ9H4G1 147 aa2.31□□□□□ -2.04
VPS13A-212ENST00000493341 TAS2R4Q9NYW5 299 aa2.31□□□□□ -2.04
VPS13A-212ENST00000493341 SCN8AQ9UQD0 1980 aa2.31□□□□□ -2.04
VPS13A-212ENST00000493341 CHD9Q3L8U1 2897 aa2.31□□□□□ -2.04
VPS13A-212ENST00000493341 IBA57-AS1B1ANH7 110 aa2.3□□□□□ -2.04
VPS13A-212ENST00000493341 H3BRN7 92 aa2.3□□□□□ -2.04
VPS13A-212ENST00000493341 DEGS1O15121 323 aa2.3□□□□□ -2.04
VPS13A-212ENST00000493341 FABP2P12104 132 aa2.3□□□□□ -2.04
VPS13A-212ENST00000493341 HBBP68871 147 aa2.3□□□□□ -2.04
VPS13A-212ENST00000493341 EIF3IQ13347 325 aaKnown RBP2.3□□□□□ -2.04
VPS13A-212ENST00000493341 ESRGQ1W209 222 aa2.3□□□□□ -2.04
VPS13A-212ENST00000493341 DEFB123Q8N688 67 aa2.3□□□□□ -2.04
VPS13A-212ENST00000493341 PLXNA4Q9HCM2 1894 aa2.3□□□□□ -2.04
VPS13A-212ENST00000493341 KRTAP9-6A8MVA2 160 aa2.3□□□□□ -2.04
VPS13A-212ENST00000493341 KPNA4O00629 521 aaPredicted RBP2.3□□□□□ -2.04
VPS13A-212ENST00000493341 OR8B8Q15620 311 aa2.3□□□□□ -2.04
VPS13A-212ENST00000493341 TPRXLQ17RH7 258 aa2.3□□□□□ -2.04
VPS13A-212ENST00000493341 RNASE10Q5GAN6 216 aaKnown RBP2.3□□□□□ -2.04
VPS13A-212ENST00000493341 ZNF826PQ6ZT77 177 aa2.3□□□□□ -2.04
VPS13A-212ENST00000493341 C7orf65Q6ZTY9 151 aa2.3□□□□□ -2.04
VPS13A-212ENST00000493341 ZNF418Q8TF45 676 aaPredicted RBP2.3□□□□□ -2.04
VPS13A-212ENST00000493341 SLC50A1Q9BRV3 221 aa2.3□□□□□ -2.04
VPS13A-212ENST00000493341 JPT1Q9UK76 154 aa2.3□□□□□ -2.04
VPS13A-212ENST00000493341 HS3ST2Q9Y278 367 aa2.3□□□□□ -2.04
VPS13A-212ENST00000493341 NUMA1Q14980 2115 aa2.3□□□□□ -2.04
VPS13A-212ENST00000493341 PDCD11Q14690 1871 aaKnown RBP2.29□□□□□ -2.04
VPS13A-212ENST00000493341 NCKAP5O14513 1909 aa2.29□□□□□ -2.04
VPS13A-212ENST00000493341 EML6Q6ZMW3 1958 aa2.29□□□□□ -2.04
VPS13A-212ENST00000493341 LY6LH3BQJ8 138 aa2.29□□□□□ -2.04
VPS13A-212ENST00000493341 HIST1H2BKO60814 126 aa2.29□□□□□ -2.04
VPS13A-212ENST00000493341 ZNF737O75373 536 aa2.29□□□□□ -2.04
VPS13A-212ENST00000493341 LYZL6O75951 148 aa2.29□□□□□ -2.04
VPS13A-212ENST00000493341 HIST1H2BJP06899 126 aa2.29□□□□□ -2.04
VPS13A-212ENST00000493341 SDC2P34741 201 aa2.29□□□□□ -2.04
VPS13A-212ENST00000493341 KRTAP10-8P60410 259 aa2.29□□□□□ -2.04
VPS13A-212ENST00000493341 SPANXN5Q5MJ07 72 aa2.29□□□□□ -2.04
VPS13A-212ENST00000493341 CXCL16Q9H2A7 254 aa2.29□□□□□ -2.04
VPS13A-212ENST00000493341 LHFPL6Q9Y693 200 aa2.29□□□□□ -2.04
Retrieved 100 of 20,778 RNA–protein pairs in 89.7 ms