RNA–Protein interactions for RNA: ENST00000492980.1

CCDC88B-208, Transcript of coiled-coil domain containing 88B, humanhuman

TSL 5

Gene CCDC88B, Length 2,118 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-208ENST00000492980 ZNF580Q9UK33 172 aa16.16■□□□□ 0.18
CCDC88B-208ENST00000492980 A0A1B0GW15 77 aa16.16■□□□□ 0.18
CCDC88B-208ENST00000492980 ZNF705DP0CH99 300 aaPredicted RBP16.16■□□□□ 0.18
CCDC88B-208ENST00000492980 ZNF705BP0CI00 300 aaPredicted RBP16.16■□□□□ 0.18
CCDC88B-208ENST00000492980 OR4X2Q8NGF9 303 aa16.16■□□□□ 0.18
CCDC88B-208ENST00000492980 TPPP3Q9BW30 176 aa16.16■□□□□ 0.18
CCDC88B-208ENST00000492980 BMI1P35226 326 aa16.15■□□□□ 0.18
CCDC88B-208ENST00000492980 SMAD7O15105 426 aaKnown RBP16.15■□□□□ 0.18
CCDC88B-208ENST00000492980 URB1-AS1Q96HZ7 61 aa16.15■□□□□ 0.18
CCDC88B-208ENST00000492980 BEX4Q9NWD9 120 aaPredicted RBP16.15■□□□□ 0.18
CCDC88B-208ENST00000492980 IGHV4-31P0DP07 118 aa16.14■□□□□ 0.17
CCDC88B-208ENST00000492980 NTF3P20783 257 aa16.14■□□□□ 0.17
CCDC88B-208ENST00000492980 DEFB113Q30KQ7 82 aa16.14■□□□□ 0.17
CCDC88B-208ENST00000492980 TMEM95Q3KNT9 176 aa16.14■□□□□ 0.17
CCDC88B-208ENST00000492980 RNASEKQ6P5S7 137 aaKnown RBP16.14■□□□□ 0.17
CCDC88B-208ENST00000492980 LYZL1Q6UWQ5 148 aa16.14■□□□□ 0.17
CCDC88B-208ENST00000492980 BORCS7Q96B45 105 aa16.14■□□□□ 0.17
CCDC88B-208ENST00000492980 CR1P17927 2039 aa16.14■□□□□ 0.17
CCDC88B-208ENST00000492980 POLQO75417 2590 aa16.13■□□□□ 0.17
CCDC88B-208ENST00000492980 A0A0G2JLM5 398 aa16.13■□□□□ 0.17
CCDC88B-208ENST00000492980 HSBP1O75506 76 aa16.13■□□□□ 0.17
CCDC88B-208ENST00000492980 KRTDAPP60985 99 aa16.13■□□□□ 0.17
CCDC88B-208ENST00000492980 FSHBP01225 129 aa16.13■□□□□ 0.17
CCDC88B-208ENST00000492980 TEX43Q6ZNM6 134 aa16.13■□□□□ 0.17
CCDC88B-208ENST00000492980 IL17RELQ6ZVW7 336 aa16.13■□□□□ 0.17
CCDC88B-208ENST00000492980 Q8N976 141 aa16.13■□□□□ 0.17
CCDC88B-208ENST00000492980 AGPAT4-IT1Q9H0P7 198 aa16.13■□□□□ 0.17
CCDC88B-208ENST00000492980 CSPG4Q6UVK1 2322 aa16.12■□□□□ 0.17
CCDC88B-208ENST00000492980 RPS20P60866 119 aaKnown RBP16.12■□□□□ 0.17
CCDC88B-208ENST00000492980 SRSF2Q01130 221 aaKnown RBP16.12■□□□□ 0.17
CCDC88B-208ENST00000492980 DEFA6Q01524 100 aa16.12■□□□□ 0.17
CCDC88B-208ENST00000492980 EPG5Q9HCE0 2579 aa16.12■□□□□ 0.17
CCDC88B-208ENST00000492980 ZNF575Q86XF7 245 aa16.12■□□□□ 0.17
CCDC88B-208ENST00000492980 Q5PR19 223 aa16.11■□□□□ 0.17
CCDC88B-208ENST00000492980 LRRC75A-AS1Q8N1F1 130 aa16.11■□□□□ 0.17
CCDC88B-208ENST00000492980 C16orf92Q96LL3 132 aa16.11■□□□□ 0.17
CCDC88B-208ENST00000492980 PSMG3-AS1Q96PY0 264 aa16.11■□□□□ 0.17
CCDC88B-208ENST00000492980 NPFFR1Q9GZQ6 430 aa16.11■□□□□ 0.17
CCDC88B-208ENST00000492980 FABP5P3A8MUU1 101 aa16.1■□□□□ 0.17
CCDC88B-208ENST00000492980 M0QZ24 198 aa16.1■□□□□ 0.17
CCDC88B-208ENST00000492980 FAM209BQ5JX69 171 aa16.1■□□□□ 0.17
CCDC88B-208ENST00000492980 ZNF493Q6ZR52 646 aa16.1■□□□□ 0.17
CCDC88B-208ENST00000492980 C9orf139Q6ZV77 190 aa16.1■□□□□ 0.17
CCDC88B-208ENST00000492980 CLEC5AQ9NY25 188 aa16.1■□□□□ 0.17
CCDC88B-208ENST00000492980 USP9YO00507 2555 aaPredicted RBP16.1■□□□□ 0.17
CCDC88B-208ENST00000492980 KIR2DL5BA0A0G2JN68 375 aa16.1■□□□□ 0.17
CCDC88B-208ENST00000492980 KIR2DL5BA0A0G2JPC4 375 aa16.1■□□□□ 0.17
CCDC88B-208ENST00000492980 CTRLP40313 264 aa16.1■□□□□ 0.17
CCDC88B-208ENST00000492980 GPHB5Q86YW7 130 aa16.1■□□□□ 0.17
CCDC88B-208ENST00000492980 KIR2DL5AQ8N109 375 aa16.1■□□□□ 0.17
CCDC88B-208ENST00000492980 C14orf144Q96I85 54 aa16.1■□□□□ 0.17
CCDC88B-208ENST00000492980 M0R2Z0 102 aa16.09■□□□□ 0.17
CCDC88B-208ENST00000492980 C3orf79P0CE67 100 aa16.09■□□□□ 0.17
CCDC88B-208ENST00000492980 IGLC6P0CF74 106 aa16.09■□□□□ 0.17
CCDC88B-208ENST00000492980 ZNF138P52744 262 aa16.09■□□□□ 0.17
CCDC88B-208ENST00000492980 TMEM213A2RRL7 107 aa16.09■□□□□ 0.17
CCDC88B-208ENST00000492980 PSMB8P28062 276 aa16.09■□□□□ 0.17
CCDC88B-208ENST00000492980 TMEM78Q5T7P6 136 aa16.09■□□□□ 0.17
CCDC88B-208ENST00000492980 C9orf47Q6ZRZ4 202 aa16.09■□□□□ 0.17
CCDC88B-208ENST00000492980 FER1L6-AS1Q8NA97 138 aa16.09■□□□□ 0.17
CCDC88B-208ENST00000492980 C20orf173Q96LM9 149 aa16.09■□□□□ 0.17
CCDC88B-208ENST00000492980 ORM1P02763 201 aa16.08■□□□□ 0.16
CCDC88B-208ENST00000492980 TDRG1Q3Y452 100 aa16.08■□□□□ 0.16
CCDC88B-208ENST00000492980 REC114Q7Z4M0 266 aa16.08■□□□□ 0.16
CCDC88B-208ENST00000492980 CHCHD1Q96BP2 118 aaKnown RBP16.08■□□□□ 0.16
CCDC88B-208ENST00000492980 PTPN13Q12923 2485 aa16.08■□□□□ 0.16
CCDC88B-208ENST00000492980 SOCS3O14543 225 aa16.07■□□□□ 0.16
CCDC88B-208ENST00000492980 LINC01559Q495D7 138 aa16.07■□□□□ 0.16
CCDC88B-208ENST00000492980 CENPEQ02224 2701 aa16.07■□□□□ 0.16
CCDC88B-208ENST00000492980 FAM181BA6NEQ2 426 aa16.07■□□□□ 0.16
CCDC88B-208ENST00000492980 PEF1Q9UBV8 284 aaKnown RBP16.07■□□□□ 0.16
CCDC88B-208ENST00000492980 VPREB3Q9UKI3 123 aa16.07■□□□□ 0.16
CCDC88B-208ENST00000492980 IGHV7-4-1A0A0J9YVY3 117 aa16.06■□□□□ 0.16
CCDC88B-208ENST00000492980 SSTP61278 116 aa16.06■□□□□ 0.16
CCDC88B-208ENST00000492980 PPP1R14DQ9NXH3 145 aa16.06■□□□□ 0.16
CCDC88B-208ENST00000492980 MUC21A0A0G2JKD1 596 aa16.06■□□□□ 0.16
CCDC88B-208ENST00000492980 MUC21A0A140T8X8 626 aa16.06■□□□□ 0.16
CCDC88B-208ENST00000492980 TM4SF20Q53R12 229 aa16.06■□□□□ 0.16
CCDC88B-208ENST00000492980 MUC21Q5SSG8 566 aa16.06■□□□□ 0.16
CCDC88B-208ENST00000492980 Q6YL49 198 aa16.06■□□□□ 0.16
CCDC88B-208ENST00000492980 LINC00614P0C842 121 aa16.05■□□□□ 0.16
CCDC88B-208ENST00000492980 C10orf99Q6UWK7 81 aa16.05■□□□□ 0.16
CCDC88B-208ENST00000492980 ZNF738Q8NE65 137 aa16.05■□□□□ 0.16
CCDC88B-208ENST00000492980 ZANQ9Y493 2812 aa16.04■□□□□ 0.16
CCDC88B-208ENST00000492980 HIST1H1AQ02539 215 aaPredicted RBP16.04■□□□□ 0.16
CCDC88B-208ENST00000492980 Q96MF0 132 aa16.04■□□□□ 0.16
CCDC88B-208ENST00000492980 NDUFAF3Q9BU61 184 aa16.04■□□□□ 0.16
CCDC88B-208ENST00000492980 DAZ1Q9NQZ3 744 aaKnown RBP16.04■□□□□ 0.16
CCDC88B-208ENST00000492980 TMEM89A2RUT3 159 aa16.04■□□□□ 0.16
CCDC88B-208ENST00000492980 PMCHL1Q16048 86 aa16.04■□□□□ 0.16
CCDC88B-208ENST00000492980 FAM104BQ5XKR9 115 aa16.04■□□□□ 0.16
CCDC88B-208ENST00000492980 EBLN2Q6P2I7 272 aa16.04■□□□□ 0.16
CCDC88B-208ENST00000492980 KRTAP1-3Q8IUG1 177 aa16.04■□□□□ 0.16
CCDC88B-208ENST00000492980 RHPN1-AS1Q9BWJ2 59 aa16.04■□□□□ 0.16
CCDC88B-208ENST00000492980 IGHV1-24A0A0C4DH33 117 aa16.03■□□□□ 0.16
CCDC88B-208ENST00000492980 VAMP8Q9BV40 100 aa16.03■□□□□ 0.16
CCDC88B-208ENST00000492980 C11orf21Q9P2W6 132 aa16.03■□□□□ 0.16
CCDC88B-208ENST00000492980 PRRC2AP48634 2157 aaKnown RBP16.03■□□□□ 0.16
CCDC88B-208ENST00000492980 IGKV3D-20A0A0C4DH25 116 aa16.03■□□□□ 0.16
CCDC88B-208ENST00000492980 DMRTA1Q5VZB9 504 aa16.03■□□□□ 0.16
Retrieved 100 of 20,778 RNA–protein pairs in 50.8 ms