RNA–Protein interactions for RNA: ENST00000489961.1

VPS13D-210, Transcript of vacuolar protein sorting 13 homolog D, humanhuman

TSL 5

Gene VPS13D, Length 443 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13D-210ENST00000489961 UBE2G2P60604 165 aa7.91□□□□□ -1.14
VPS13D-210ENST00000489961 SUMO1P63165 101 aaKnown RBP7.91□□□□□ -1.14
VPS13D-210ENST00000489961 VGLL1Q99990 258 aa7.91□□□□□ -1.14
VPS13D-210ENST00000489961 TMEM208Q9BTX3 173 aa7.91□□□□□ -1.14
VPS13D-210ENST00000489961 AGPAT4-IT1Q9H0P7 198 aa7.91□□□□□ -1.14
VPS13D-210ENST00000489961 BOLA1Q9Y3E2 137 aa7.91□□□□□ -1.14
VPS13D-210ENST00000489961 COL7A1Q02388 2944 aa7.9□□□□□ -1.14
VPS13D-210ENST00000489961 TRAV12-2A0A075B6T6 113 aa7.9□□□□□ -1.14
VPS13D-210ENST00000489961 IGHV3OR16-12A0A075B7B8 117 aa7.9□□□□□ -1.14
VPS13D-210ENST00000489961 FAM74A7A6NL05 159 aa7.9□□□□□ -1.14
VPS13D-210ENST00000489961 ZNF705EA8MWA4 302 aaPredicted RBP7.9□□□□□ -1.14
VPS13D-210ENST00000489961 GGTLC3B5MD39 225 aa7.9□□□□□ -1.14
VPS13D-210ENST00000489961 CRXO43186 299 aaPredicted RBP7.9□□□□□ -1.14
VPS13D-210ENST00000489961 IFNA7P01567 189 aa7.9□□□□□ -1.14
VPS13D-210ENST00000489961 MIFP14174 115 aa7.9□□□□□ -1.14
VPS13D-210ENST00000489961 ZNF138P52744 262 aa7.9□□□□□ -1.14
VPS13D-210ENST00000489961 GNG5P63218 68 aa7.9□□□□□ -1.14
VPS13D-210ENST00000489961 ALKAL2Q6UX46 152 aa7.9□□□□□ -1.14
VPS13D-210ENST00000489961 ZNF705AQ6ZN79 300 aaPredicted RBP7.9□□□□□ -1.14
VPS13D-210ENST00000489961 GOLT1AQ6ZVE7 132 aa7.9□□□□□ -1.14
VPS13D-210ENST00000489961 WWC2-AS2Q96NR7 200 aa7.9□□□□□ -1.14
VPS13D-210ENST00000489961 ZNF492Q9P255 531 aa7.9□□□□□ -1.14
VPS13D-210ENST00000489961 YTHDF2Q9Y5A9 579 aaKnown RBP7.9□□□□□ -1.14
VPS13D-210ENST00000489961 ARL2-SNX15V9GYD0 113 aa7.9□□□□□ -1.14
VPS13D-210ENST00000489961 TGP01266 2768 aa7.9□□□□□ -1.15
VPS13D-210ENST00000489961 TRAV1-1A0A0B4J248 108 aa7.89□□□□□ -1.15
VPS13D-210ENST00000489961 TRBV7-9A0A0J9YWB2 115 aa7.89□□□□□ -1.15
VPS13D-210ENST00000489961 SMIM9A6NGZ8 99 aa7.89□□□□□ -1.15
VPS13D-210ENST00000489961 J3KRW8 73 aa7.89□□□□□ -1.15
VPS13D-210ENST00000489961 TCRAP04437 139 aa7.89□□□□□ -1.15
VPS13D-210ENST00000489961 NMBP08949 121 aa7.89□□□□□ -1.15
VPS13D-210ENST00000489961 CST9LP1Q5W188 147 aa7.89□□□□□ -1.15
VPS13D-210ENST00000489961 C1orf158Q8N1D5 194 aa7.89□□□□□ -1.15
VPS13D-210ENST00000489961 TMEM256Q8N2U0 113 aa7.89□□□□□ -1.15
VPS13D-210ENST00000489961 NEU1Q99519 415 aa7.89□□□□□ -1.15
VPS13D-210ENST00000489961 C20orf144Q9BQM9 153 aa7.89□□□□□ -1.15
VPS13D-210ENST00000489961 EPDR1Q9UM22 224 aa7.89□□□□□ -1.15
VPS13D-210ENST00000489961 LENEPQ9Y5L5 61 aa7.89□□□□□ -1.15
VPS13D-210ENST00000489961 X6R8D5 127 aa7.89□□□□□ -1.15
VPS13D-210ENST00000489961 DNAH9Q9NYC9 4486 aa7.88□□□□□ -1.15
VPS13D-210ENST00000489961 A0A0J9YWU9 116 aa7.88□□□□□ -1.15
VPS13D-210ENST00000489961 FBLL1A6NHQ2 334 aaKnown RBP7.88□□□□□ -1.15
VPS13D-210ENST00000489961 F6UZH7 168 aa7.88□□□□□ -1.15
VPS13D-210ENST00000489961 PAGE4O60829 102 aa7.88□□□□□ -1.15
VPS13D-210ENST00000489961 GPX1P07203 203 aa7.88□□□□□ -1.15
VPS13D-210ENST00000489961 CRISP2P16562 243 aa7.88□□□□□ -1.15
VPS13D-210ENST00000489961 BLOC1S1P78537 153 aa7.88□□□□□ -1.15
VPS13D-210ENST00000489961 GFI1BQ5VTD9 330 aa7.88□□□□□ -1.15
VPS13D-210ENST00000489961 CYB561D1Q8N8Q1 229 aa7.88□□□□□ -1.15
VPS13D-210ENST00000489961 Q8TAT8 98 aa7.88□□□□□ -1.15
VPS13D-210ENST00000489961 FAM19A4Q96LR4 140 aa7.88□□□□□ -1.15
VPS13D-210ENST00000489961 TCEAL7Q9BRU2 100 aa7.88□□□□□ -1.15
VPS13D-210ENST00000489961 ATG101Q9BSB4 218 aa7.88□□□□□ -1.15
VPS13D-210ENST00000489961 C11orf68Q9H3H3 251 aaKnown RBP7.88□□□□□ -1.15
VPS13D-210ENST00000489961 EDA2RQ9HAV5 297 aa7.88□□□□□ -1.15
VPS13D-210ENST00000489961 MANBALQ9NQG1 85 aa7.88□□□□□ -1.15
VPS13D-210ENST00000489961 NBEAL2Q6ZNJ1 2754 aa7.88□□□□□ -1.15
VPS13D-210ENST00000489961 IGHV4-28A0A0C4DH34 117 aa7.87□□□□□ -1.15
VPS13D-210ENST00000489961 C7orf71A4D174 169 aa7.87□□□□□ -1.15
VPS13D-210ENST00000489961 KLLNB2CW77 178 aa7.87□□□□□ -1.15
VPS13D-210ENST00000489961 PEX7O00628 323 aa7.87□□□□□ -1.15
VPS13D-210ENST00000489961 IFNA1P01562 189 aa7.87□□□□□ -1.15
VPS13D-210ENST00000489961 KIR3DS1Q14943 382 aa7.87□□□□□ -1.15
VPS13D-210ENST00000489961 RRN3P1Q2M238 152 aa7.87□□□□□ -1.15
VPS13D-210ENST00000489961 Q8NAQ8 132 aa7.87□□□□□ -1.15
VPS13D-210ENST00000489961 HIST1H2BAQ96A08 127 aa7.87□□□□□ -1.15
VPS13D-210ENST00000489961 LINC01587Q99440 93 aa7.87□□□□□ -1.15
VPS13D-210ENST00000489961 NIPSNAP3BQ9BS92 247 aa7.87□□□□□ -1.15
VPS13D-210ENST00000489961 NDFIP1Q9BT67 221 aa7.87□□□□□ -1.15
VPS13D-210ENST00000489961 GNG13Q9P2W3 67 aa7.87□□□□□ -1.15
VPS13D-210ENST00000489961 TRAV8-1A0A0A6YYK1 113 aa7.86□□□□□ -1.15
VPS13D-210ENST00000489961 TRAV12-3A0A0B4J271 114 aa7.86□□□□□ -1.15
VPS13D-210ENST00000489961 TMEM189A5PLL7 270 aa7.86□□□□□ -1.15
VPS13D-210ENST00000489961 H7BYZ3 331 aa7.86□□□□□ -1.15
VPS13D-210ENST00000489961 RBMY1A1P0DJD3 496 aaKnown RBP7.86□□□□□ -1.15
VPS13D-210ENST00000489961 RBMY1CP0DJD4 496 aa7.86□□□□□ -1.15
VPS13D-210ENST00000489961 RNASE4P34096 147 aaKnown RBP7.86□□□□□ -1.15
VPS13D-210ENST00000489961 ATP5G3P48201 142 aa7.86□□□□□ -1.15
VPS13D-210ENST00000489961 CCL20P78556 96 aa7.86□□□□□ -1.15
VPS13D-210ENST00000489961 BTN1A1Q13410 526 aa7.86□□□□□ -1.15
VPS13D-210ENST00000489961 RBMY1FQ15415 496 aaKnown RBP7.86□□□□□ -1.15
VPS13D-210ENST00000489961 CCDC28AQ8IWP9 274 aa7.86□□□□□ -1.15
VPS13D-210ENST00000489961 ZFAND2AQ8N6M9 145 aa7.86□□□□□ -1.15
VPS13D-210ENST00000489961 TMEM75Q8N9X5 138 aa7.86□□□□□ -1.15
VPS13D-210ENST00000489961 PSG8Q9UQ74 426 aa7.86□□□□□ -1.15
VPS13D-210ENST00000489961 TENM3Q9P273 2699 aa7.86□□□□□ -1.15
VPS13D-210ENST00000489961 ZNF705GA8MUZ8 300 aaPredicted RBP7.85□□□□□ -1.15
VPS13D-210ENST00000489961 C11orf94C9JXX5 98 aa7.85□□□□□ -1.15
VPS13D-210ENST00000489961 DEFB4AO15263 64 aa7.85□□□□□ -1.15
VPS13D-210ENST00000489961 TAS2R60P59551 318 aa7.85□□□□□ -1.15
VPS13D-210ENST00000489961 FLI1Q01543 452 aaPredicted RBP7.85□□□□□ -1.15
VPS13D-210ENST00000489961 IL17DQ8TAD2 202 aa7.85□□□□□ -1.15
VPS13D-210ENST00000489961 SGK494Q96LW2 274 aa7.85□□□□□ -1.15
VPS13D-210ENST00000489961 TREM1Q9NP99 234 aa7.85□□□□□ -1.15
VPS13D-210ENST00000489961 LOC102723971A0A1B0GUV8 181 aa7.84□□□□□ -1.15
VPS13D-210ENST00000489961 HTN1P15515 57 aa7.84□□□□□ -1.15
VPS13D-210ENST00000489961 TAGLN2P37802 199 aaKnown RBP7.84□□□□□ -1.15
VPS13D-210ENST00000489961 AKR1C3P42330 323 aa7.84□□□□□ -1.15
VPS13D-210ENST00000489961 UBE2G1P62253 170 aa7.84□□□□□ -1.15
VPS13D-210ENST00000489961 PMS2P11Q13670 270 aa7.84□□□□□ -1.15
Retrieved 100 of 20,778 RNA–protein pairs in 53.5 ms