RNA–Protein interactions for RNA: ENST00000487938.5

VIM-206, Transcript of vimentin, humanhuman

TSL 5

Gene VIM, Length 2,272 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VIM-206ENST00000487938 FOXE3Q13461 319 aa13.9□□□□□ -0.18
VIM-206ENST00000487938 CLEC19AQ6UXS0 136 aa13.9□□□□□ -0.18
VIM-206ENST00000487938 FAM110DQ8TAY7 271 aaPredicted RBP13.9□□□□□ -0.18
VIM-206ENST00000487938 IGHV3-49A0A0A0MS15 119 aa13.89□□□□□ -0.19
VIM-206ENST00000487938 IGHV2-70DA0A0C4DH43 119 aa13.89□□□□□ -0.19
VIM-206ENST00000487938 MS4A6AQ9H2W1 248 aa13.89□□□□□ -0.19
VIM-206ENST00000487938 A0A087X0K7 114 aa13.89□□□□□ -0.19
VIM-206ENST00000487938 UBE2E1P51965 193 aa13.89□□□□□ -0.19
VIM-206ENST00000487938 ZFAND3Q9H8U3 227 aa13.89□□□□□ -0.19
VIM-206ENST00000487938 SPTBN4Q9H254 2564 aa13.88□□□□□ -0.19
VIM-206ENST00000487938 ZNF207O43670 478 aaKnown RBP13.88□□□□□ -0.19
VIM-206ENST00000487938 BUB3O43684 328 aa13.88□□□□□ -0.19
VIM-206ENST00000487938 NPYP01303 97 aa13.88□□□□□ -0.19
VIM-206ENST00000487938 PPIFP30405 207 aaKnown RBP13.88□□□□□ -0.19
VIM-206ENST00000487938 BVES-AS1Q5T3Y7 98 aa13.88□□□□□ -0.19
VIM-206ENST00000487938 IGLC6P0CF74 106 aa13.88□□□□□ -0.19
VIM-206ENST00000487938 TCTAP57738 103 aa13.88□□□□□ -0.19
VIM-206ENST00000487938 LY6DQ14210 128 aa13.88□□□□□ -0.19
VIM-206ENST00000487938 ARL6IP6Q8N6S5 226 aa13.88□□□□□ -0.19
VIM-206ENST00000487938 AKAP6Q13023 2319 aa13.88□□□□□ -0.19
VIM-206ENST00000487938 RPS20P60866 119 aaKnown RBP13.87□□□□□ -0.19
VIM-206ENST00000487938 PIP4P2Q8N4L2 257 aa13.87□□□□□ -0.19
VIM-206ENST00000487938 FABP5P3A8MUU1 101 aa13.87□□□□□ -0.19
VIM-206ENST00000487938 GAS8-AS1O95177 125 aa13.87□□□□□ -0.19
VIM-206ENST00000487938 GOSR1O95249 250 aa13.87□□□□□ -0.19
VIM-206ENST00000487938 UBE2V1Q13404 147 aa13.87□□□□□ -0.19
VIM-206ENST00000487938 UNQ5830/PRO19650/PRO19816Q6UY13 95 aa13.87□□□□□ -0.19
VIM-206ENST00000487938 BPESC1Q9GZL8 116 aa13.87□□□□□ -0.19
VIM-206ENST00000487938 CLPSL1A2RUU4 121 aa13.86□□□□□ -0.19
VIM-206ENST00000487938 FBLL1A6NHQ2 334 aaKnown RBP13.86□□□□□ -0.19
VIM-206ENST00000487938 IL17RELQ6ZVW7 336 aa13.86□□□□□ -0.19
VIM-206ENST00000487938 WFDC3Q8IUB2 231 aa13.86□□□□□ -0.19
VIM-206ENST00000487938 CCDC140Q96MF4 163 aa13.86□□□□□ -0.19
VIM-206ENST00000487938 LMO4P61968 165 aa13.85□□□□□ -0.19
VIM-206ENST00000487938 PRSS57Q6UWY2 283 aa13.85□□□□□ -0.19
VIM-206ENST00000487938 IGHV3OR16-10A0A075B7F0 116 aa13.84□□□□□ -0.19
VIM-206ENST00000487938 COX8AP10176 69 aa13.84□□□□□ -0.19
VIM-206ENST00000487938 EFNA4P52798 201 aa13.84□□□□□ -0.19
VIM-206ENST00000487938 CACNG7P62955 275 aa13.84□□□□□ -0.19
VIM-206ENST00000487938 ANKRD39Q53RE8 183 aa13.84□□□□□ -0.19
VIM-206ENST00000487938 RNF185Q96GF1 192 aa13.84□□□□□ -0.19
VIM-206ENST00000487938 TAX1BP3O14907 124 aa13.84□□□□□ -0.19
VIM-206ENST00000487938 S100A7P31151 101 aa13.84□□□□□ -0.19
VIM-206ENST00000487938 PAX8Q06710 450 aa13.84□□□□□ -0.19
VIM-206ENST00000487938 PSMG3-AS1Q96PY0 264 aa13.84□□□□□ -0.19
VIM-206ENST00000487938 LINC00527Q9UJ94 153 aa13.84□□□□□ -0.19
VIM-206ENST00000487938 VPS13CQ709C8 3753 aa13.83□□□□□ -0.19
VIM-206ENST00000487938 CENPVL3A0A0U1RRI6 287 aa13.83□□□□□ -0.2
VIM-206ENST00000487938 CBY3A6NI87 242 aa13.83□□□□□ -0.2
VIM-206ENST00000487938 HBDP02042 147 aa13.83□□□□□ -0.2
VIM-206ENST00000487938 SFTPCP11686 197 aa13.83□□□□□ -0.2
VIM-206ENST00000487938 VAMP3Q15836 100 aa13.83□□□□□ -0.2
VIM-206ENST00000487938 C12orf54Q6X4T0 127 aa13.83□□□□□ -0.2
VIM-206ENST00000487938 TMEM219Q86XT9 240 aa13.83□□□□□ -0.2
VIM-206ENST00000487938 HIVEP3Q5T1R4 2406 aa13.83□□□□□ -0.2
VIM-206ENST00000487938 HIST1H1AQ02539 215 aaPredicted RBP13.83□□□□□ -0.2
VIM-206ENST00000487938 C2orf91Q6ZV80 131 aa13.83□□□□□ -0.2
VIM-206ENST00000487938 AGPAT4-IT1Q9H0P7 198 aa13.83□□□□□ -0.2
VIM-206ENST00000487938 NPFFO15130 113 aa13.82□□□□□ -0.2
VIM-206ENST00000487938 PRORYQ9H606 182 aa13.82□□□□□ -0.2
VIM-206ENST00000487938 EVI2AP22794 236 aa13.81□□□□□ -0.2
VIM-206ENST00000487938 EEF1AKMT3Q96AZ1 226 aa13.81□□□□□ -0.2
VIM-206ENST00000487938 CELSR1Q9NYQ6 3014 aa13.81□□□□□ -0.2
VIM-206ENST00000487938 IGKV3D-20A0A0C4DH25 116 aa13.81□□□□□ -0.2
VIM-206ENST00000487938 GATA1P15976 413 aaPredicted RBP13.81□□□□□ -0.2
VIM-206ENST00000487938 RAB9AP51151 201 aa13.81□□□□□ -0.2
VIM-206ENST00000487938 SRSF2Q01130 221 aaKnown RBP13.81□□□□□ -0.2
VIM-206ENST00000487938 DEFB125Q8N687 156 aa13.81□□□□□ -0.2
VIM-206ENST00000487938 IFI27L1Q96BM0 104 aa13.81□□□□□ -0.2
VIM-206ENST00000487938 C18orf15Q96N68 181 aa13.81□□□□□ -0.2
VIM-206ENST00000487938 C11orf21Q9P2W6 132 aa13.81□□□□□ -0.2
VIM-206ENST00000487938 TRAV8-2A0A0B4J237 113 aa13.8□□□□□ -0.2
VIM-206ENST00000487938 LGALS9BQ3B8N2 356 aa13.8□□□□□ -0.2
VIM-206ENST00000487938 LGALS9CQ6DKI2 356 aa13.8□□□□□ -0.2
VIM-206ENST00000487938 Q6ZQT7 251 aa13.8□□□□□ -0.2
VIM-206ENST00000487938 LINC01559Q495D7 138 aa13.8□□□□□ -0.2
VIM-206ENST00000487938 METTL26Q96S19 204 aa13.8□□□□□ -0.2
VIM-206ENST00000487938 SLC50A1Q9BRV3 221 aa13.8□□□□□ -0.2
VIM-206ENST00000487938 C19orf84I3L1E1 186 aa13.79□□□□□ -0.2
VIM-206ENST00000487938 C5orf56Q8N8D9 126 aa13.79□□□□□ -0.2
VIM-206ENST00000487938 MAP1LC3AQ9H492 121 aa13.79□□□□□ -0.2
VIM-206ENST00000487938 CHD8Q9HCK8 2581 aa13.79□□□□□ -0.2
VIM-206ENST00000487938 KLK9Q2XQG4 91 aa13.79□□□□□ -0.2
VIM-206ENST00000487938 CNFNQ9BYD5 112 aa13.79□□□□□ -0.2
VIM-206ENST00000487938 DKK2Q9UBU2 259 aa13.79□□□□□ -0.2
VIM-206ENST00000487938 KLK9Q9UKQ9 250 aa13.79□□□□□ -0.2
VIM-206ENST00000487938 RBAKDNA6NC62 111 aa13.78□□□□□ -0.2
VIM-206ENST00000487938 TNFRSF6BO95407 300 aa13.78□□□□□ -0.2
VIM-206ENST00000487938 FGF6P10767 208 aa13.78□□□□□ -0.2
VIM-206ENST00000487938 ATP5G2Q06055 141 aa13.78□□□□□ -0.2
VIM-206ENST00000487938 C8orf86Q6ZUL3 223 aa13.78□□□□□ -0.2
VIM-206ENST00000487938 OR4C5Q8NGB2 326 aa13.78□□□□□ -0.2
VIM-206ENST00000487938 NCOR2Q9Y618 2525 aa13.78□□□□□ -0.2
VIM-206ENST00000487938 TRBV7-1A0A0A6YYK4 115 aa13.78□□□□□ -0.2
VIM-206ENST00000487938 LEPP41159 167 aa13.77□□□□□ -0.21
VIM-206ENST00000487938 UQCRFS1P47985 274 aa13.77□□□□□ -0.21
VIM-206ENST00000487938 TMEM78Q5T7P6 136 aa13.77□□□□□ -0.21
VIM-206ENST00000487938 TRGV3P03979 118 aa13.76□□□□□ -0.21
VIM-206ENST00000487938 AMMECR1LQ6DCA0 310 aa13.76□□□□□ -0.21
VIM-206ENST00000487938 RNASE8Q8TDE3 154 aaKnown RBP13.76□□□□□ -0.21
Retrieved 100 of 20,778 RNA–protein pairs in 85.1 ms