RNA–Protein interactions for RNA: ENST00000487188.1

VPS13D-209, Transcript of vacuolar protein sorting 13 homolog D, humanhuman

TSL 2

Gene VPS13D, Length 3,990 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13D-209ENST00000487188 TRBV20-1A0A075B6N2 111 aa4.92□□□□□ -1.62
VPS13D-209ENST00000487188 TRBV7-9A0A0J9YWB2 115 aa4.92□□□□□ -1.62
VPS13D-209ENST00000487188 H7C2G1 150 aa4.92□□□□□ -1.62
VPS13D-209ENST00000487188 GATA1P15976 413 aaPredicted RBP4.92□□□□□ -1.62
VPS13D-209ENST00000487188 HERVK_113P61574 105 aa4.92□□□□□ -1.62
VPS13D-209ENST00000487188 SPRNQ5BIV9 151 aa4.92□□□□□ -1.62
VPS13D-209ENST00000487188 CFAP126Q5VTH2 177 aa4.92□□□□□ -1.62
VPS13D-209ENST00000487188 PRSS33Q8NF86 280 aa4.92□□□□□ -1.62
VPS13D-209ENST00000487188 TMEM190Q8WZ59 177 aa4.92□□□□□ -1.62
VPS13D-209ENST00000487188 RNF125Q96EQ8 232 aa4.92□□□□□ -1.62
VPS13D-209ENST00000487188 SCGB3A1Q96QR1 104 aa4.92□□□□□ -1.62
VPS13D-209ENST00000487188 SHANK2-AS3Q9BTD1 123 aa4.92□□□□□ -1.62
VPS13D-209ENST00000487188 FBXL15Q9H469 300 aa4.92□□□□□ -1.62
VPS13D-209ENST00000487188 H7C1H1 209 aa4.92□□□□□ -1.62
VPS13D-209ENST00000487188 NDUFB3O43676 98 aa4.92□□□□□ -1.62
VPS13D-209ENST00000487188 HLA-DRB4P13762 266 aa4.92□□□□□ -1.62
VPS13D-209ENST00000487188 RPL7P18124 248 aaKnown RBP4.92□□□□□ -1.62
VPS13D-209ENST00000487188 TCF15Q12870 199 aa4.92□□□□□ -1.62
VPS13D-209ENST00000487188 SIGLEC15Q6ZMC9 328 aa4.92□□□□□ -1.62
VPS13D-209ENST00000487188 Q8N8P6 123 aa4.92□□□□□ -1.62
VPS13D-209ENST00000487188 TMEM105Q8N8V8 129 aa4.92□□□□□ -1.62
VPS13D-209ENST00000487188 ONECUT1Q9UBC0 465 aa4.92□□□□□ -1.62
VPS13D-209ENST00000487188 HHLA3Q9XRX5 114 aa4.92□□□□□ -1.62
VPS13D-209ENST00000487188 S4R3C0 116 aa4.92□□□□□ -1.62
VPS13D-209ENST00000487188 HLA-DRB4X5D2U9 266 aa4.92□□□□□ -1.62
VPS13D-209ENST00000487188 A0A087WX48 190 aa4.92□□□□□ -1.62
VPS13D-209ENST00000487188 CRIP1P50238 77 aa4.92□□□□□ -1.62
VPS13D-209ENST00000487188 SPANXN1Q5VSR9 72 aa4.92□□□□□ -1.62
VPS13D-209ENST00000487188 C1orf162Q8NEQ5 155 aaPredicted RBP4.92□□□□□ -1.62
VPS13D-209ENST00000487188 MSRB1Q9NZV6 116 aa4.92□□□□□ -1.62
VPS13D-209ENST00000487188 PRO0461Q9UI25 63 aa4.92□□□□□ -1.62
VPS13D-209ENST00000487188 ROS1P08922 2347 aa4.91□□□□□ -1.62
VPS13D-209ENST00000487188 EFNA4P52798 201 aa4.91□□□□□ -1.62
VPS13D-209ENST00000487188 DIAPH2-AS1Q14236 149 aa4.91□□□□□ -1.62
VPS13D-209ENST00000487188 MED13Q9UHV7 2174 aa4.91□□□□□ -1.62
VPS13D-209ENST00000487188 C16orf97H3BN30 126 aa4.91□□□□□ -1.62
VPS13D-209ENST00000487188 EGR2P11161 476 aaPredicted RBP4.91□□□□□ -1.62
VPS13D-209ENST00000487188 CCL8P80075 99 aa4.91□□□□□ -1.62
VPS13D-209ENST00000487188 PVRIGQ6DKI7 326 aa4.91□□□□□ -1.62
VPS13D-209ENST00000487188 CGB1A6NKQ9 187 aa4.91□□□□□ -1.62
VPS13D-209ENST00000487188 ZNF785A8K8V0 405 aa4.91□□□□□ -1.62
VPS13D-209ENST00000487188 PATE3B3GLJ2 98 aa4.91□□□□□ -1.62
VPS13D-209ENST00000487188 F8VRH5 84 aa4.91□□□□□ -1.62
VPS13D-209ENST00000487188 H3BRN7 92 aa4.91□□□□□ -1.62
VPS13D-209ENST00000487188 NTN3O00634 580 aaPredicted RBP4.91□□□□□ -1.62
VPS13D-209ENST00000487188 CRYGCP07315 174 aa4.91□□□□□ -1.62
VPS13D-209ENST00000487188 ANKRD29Q8N6D5 301 aa4.91□□□□□ -1.62
VPS13D-209ENST00000487188 OR11H6Q8NGC7 330 aa4.91□□□□□ -1.62
VPS13D-209ENST00000487188 FABP5P3A8MUU1 101 aa4.9□□□□□ -1.62
VPS13D-209ENST00000487188 K7EM74 188 aa4.9□□□□□ -1.62
VPS13D-209ENST00000487188 IFITM1P13164 125 aa4.9□□□□□ -1.62
VPS13D-209ENST00000487188 RUSC1-AS1Q66K80 236 aa4.9□□□□□ -1.62
VPS13D-209ENST00000487188 SHISA2Q6UWI4 295 aa4.9□□□□□ -1.62
VPS13D-209ENST00000487188 NFE4Q86UQ8 179 aa4.9□□□□□ -1.62
VPS13D-209ENST00000487188 PPP1R27Q86WC6 154 aa4.9□□□□□ -1.62
VPS13D-209ENST00000487188 KIR2DL4Q99706 377 aa4.9□□□□□ -1.62
VPS13D-209ENST00000487188 PRADC1Q9BSG0 188 aa4.9□□□□□ -1.62
VPS13D-209ENST00000487188 TRBV7-3A0A075B6L6 115 aa4.9□□□□□ -1.62
VPS13D-209ENST00000487188 VSTM5A8MXK1 200 aa4.9□□□□□ -1.62
VPS13D-209ENST00000487188 C9JAW5 83 aa4.9□□□□□ -1.62
VPS13D-209ENST00000487188 GLRXP35754 106 aa4.9□□□□□ -1.62
VPS13D-209ENST00000487188 PRR25Q96S07 402 aa4.9□□□□□ -1.62
VPS13D-209ENST00000487188 ZMAT4Q9H898 229 aa4.9□□□□□ -1.62
VPS13D-209ENST00000487188 CFAP54Q96N23 3096 aa4.9□□□□□ -1.62
VPS13D-209ENST00000487188 PLCE1Q9P212 2302 aa4.9□□□□□ -1.62
VPS13D-209ENST00000487188 ZGRF1Q86YA3 2104 aa4.9□□□□□ -1.63
VPS13D-209ENST00000487188 DSCAMO60469 2012 aa4.9□□□□□ -1.63
VPS13D-209ENST00000487188 DMXL1Q9Y485 3027 aa4.9□□□□□ -1.63
VPS13D-209ENST00000487188 ZFP2Q6ZN57 461 aa4.9□□□□□ -1.63
VPS13D-209ENST00000487188 C9orf106Q8NAJ2 232 aa4.9□□□□□ -1.63
VPS13D-209ENST00000487188 TRAV8-4A0A0B4J246 113 aa4.89□□□□□ -1.63
VPS13D-209ENST00000487188 SLC25A16P16260 332 aa4.89□□□□□ -1.63
VPS13D-209ENST00000487188 COX7A1P24310 79 aa4.89□□□□□ -1.63
VPS13D-209ENST00000487188 DSCAML1Q8TD84 2053 aa4.89□□□□□ -1.63
VPS13D-209ENST00000487188 TRAV26-2A0A0B4J265 109 aa4.89□□□□□ -1.63
VPS13D-209ENST00000487188 LGALS1P09382 135 aaKnown RBP4.89□□□□□ -1.63
VPS13D-209ENST00000487188 CNTFRP26992 372 aa4.89□□□□□ -1.63
VPS13D-209ENST00000487188 NDUFV3P56181 108 aaKnown RBP4.89□□□□□ -1.63
VPS13D-209ENST00000487188 IGFL4Q6B9Z1 124 aa4.89□□□□□ -1.63
VPS13D-209ENST00000487188 MORN3Q6PF18 240 aaPredicted RBP4.89□□□□□ -1.63
VPS13D-209ENST00000487188 Q6ZS92 163 aa4.89□□□□□ -1.63
VPS13D-209ENST00000487188 DTX2Q86UW9 622 aa4.89□□□□□ -1.63
VPS13D-209ENST00000487188 CCL17Q92583 94 aa4.89□□□□□ -1.63
VPS13D-209ENST00000487188 RAB1BQ9H0U4 201 aa4.89□□□□□ -1.63
VPS13D-209ENST00000487188 PIEZO1Q92508 2521 aa4.89□□□□□ -1.63
VPS13D-209ENST00000487188 SLC25A20O43772 301 aa4.89□□□□□ -1.63
VPS13D-209ENST00000487188 GAS8-AS1O95177 125 aa4.89□□□□□ -1.63
VPS13D-209ENST00000487188 IGLV2-23P01705 113 aa4.89□□□□□ -1.63
VPS13D-209ENST00000487188 IGHV1-46P01743 117 aa4.89□□□□□ -1.63
VPS13D-209ENST00000487188 MGPP08493 103 aa4.89□□□□□ -1.63
VPS13D-209ENST00000487188 HOXB4P17483 251 aaPredicted RBP4.89□□□□□ -1.63
VPS13D-209ENST00000487188 PDE6HQ13956 83 aa4.89□□□□□ -1.63
VPS13D-209ENST00000487188 TMEM155Q4W5P6 130 aa4.89□□□□□ -1.63
VPS13D-209ENST00000487188 C1orf122Q6ZSJ8 110 aa4.89□□□□□ -1.63
VPS13D-209ENST00000487188 BEX4Q9NWD9 120 aaPredicted RBP4.89□□□□□ -1.63
VPS13D-209ENST00000487188 MUC6Q6W4X9 2439 aa4.89□□□□□ -1.63
VPS13D-209ENST00000487188 CEP250Q9BV73 2442 aa4.89□□□□□ -1.63
VPS13D-209ENST00000487188 TCL1BO95988 128 aa4.89□□□□□ -1.63
VPS13D-209ENST00000487188 LHBP01229 141 aa4.89□□□□□ -1.63
VPS13D-209ENST00000487188 CD40P25942 277 aa4.89□□□□□ -1.63
Retrieved 100 of 20,778 RNA–protein pairs in 47.6 ms