RNA–Protein interactions for RNA: ENST00000479544.6

USP42-206, Transcript of ubiquitin specific peptidase 42, humanhuman

TSL 1 (best)

Gene USP42, Length 4,286 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP42-206ENST00000479544 RNF182Q8N6D2 247 aa10.8□□□□□ -0.68
USP42-206ENST00000479544 MRPL35Q9NZE8 188 aaKnown RBP10.8□□□□□ -0.68
USP42-206ENST00000479544 IGKV3D-20A0A0C4DH25 116 aa10.79□□□□□ -0.68
USP42-206ENST00000479544 IGHV1-3A0A0C4DH29 117 aa10.79□□□□□ -0.68
USP42-206ENST00000479544 TEX29Q8N6K0 151 aa10.79□□□□□ -0.68
USP42-206ENST00000479544 PLSCR4Q9NRQ2 329 aa10.79□□□□□ -0.68
USP42-206ENST00000479544 MSRB1Q9NZV6 116 aa10.79□□□□□ -0.68
USP42-206ENST00000479544 CELSR3Q9NYQ7 3312 aa10.79□□□□□ -0.68
USP42-206ENST00000479544 CDX4O14627 284 aaPredicted RBP10.79□□□□□ -0.68
USP42-206ENST00000479544 IGLC1P0CG04 106 aa10.79□□□□□ -0.68
USP42-206ENST00000479544 HLA-DMBP28068 263 aa10.79□□□□□ -0.68
USP42-206ENST00000479544 RNASE4P34096 147 aaKnown RBP10.79□□□□□ -0.68
USP42-206ENST00000479544 WFDC2Q14508 124 aa10.79□□□□□ -0.68
USP42-206ENST00000479544 IGF2BP2-AS1Q96M15 143 aa10.79□□□□□ -0.68
USP42-206ENST00000479544 FNDC10F2Z333 226 aa10.79□□□□□ -0.68
USP42-206ENST00000479544 PPBPP02775 128 aa10.79□□□□□ -0.68
USP42-206ENST00000479544 NPC2P61916 151 aa10.79□□□□□ -0.68
USP42-206ENST00000479544 SRSF1Q07955 248 aaKnown RBP eCLIP10.79□□□□□ -0.68
USP42-206ENST00000479544 LOXL1Q08397 574 aaPredicted RBP10.79□□□□□ -0.68
USP42-206ENST00000479544 SPATA12Q7Z6I5 190 aa10.78□□□□□ -0.68
USP42-206ENST00000479544 PVRIGQ6DKI7 326 aa10.78□□□□□ -0.68
USP42-206ENST00000479544 C14orf178Q8N769 122 aaPredicted RBP10.78□□□□□ -0.68
USP42-206ENST00000479544 SPEGQ15772 3267 aa10.78□□□□□ -0.68
USP42-206ENST00000479544 TRAV12-3A0A0B4J271 114 aa10.78□□□□□ -0.68
USP42-206ENST00000479544 IGLV2-8P01709 118 aa10.78□□□□□ -0.68
USP42-206ENST00000479544 RAB9AP51151 201 aa10.78□□□□□ -0.68
USP42-206ENST00000479544 KLF5Q13887 457 aaPredicted RBP10.78□□□□□ -0.68
USP42-206ENST00000479544 RNASE6Q93091 150 aaKnown RBP10.78□□□□□ -0.68
USP42-206ENST00000479544 ARHGAP32A7KAX9 2087 aa10.78□□□□□ -0.68
USP42-206ENST00000479544 CRXO43186 299 aaPredicted RBP10.78□□□□□ -0.68
USP42-206ENST00000479544 NDUFS7O75251 213 aa10.78□□□□□ -0.68
USP42-206ENST00000479544 FXYD2P54710 66 aa10.78□□□□□ -0.68
USP42-206ENST00000479544 LAGE3Q14657 143 aa10.78□□□□□ -0.68
USP42-206ENST00000479544 SYT8Q8NBV8 401 aa10.78□□□□□ -0.68
USP42-206ENST00000479544 SCRT2Q9NQ03 307 aa10.77□□□□□ -0.68
USP42-206ENST00000479544 NPIPB6E9PJ23 425 aa10.77□□□□□ -0.69
USP42-206ENST00000479544 COX6CP09669 75 aa10.77□□□□□ -0.69
USP42-206ENST00000479544 P0C879 139 aa10.77□□□□□ -0.69
USP42-206ENST00000479544 C1orf229Q6ZS94 237 aaPredicted RBP10.77□□□□□ -0.69
USP42-206ENST00000479544 NEU4Q8WWR8 484 aaPredicted RBP10.77□□□□□ -0.69
USP42-206ENST00000479544 RITA1Q96K30 269 aa10.77□□□□□ -0.69
USP42-206ENST00000479544 PSMB11A5LHX3 300 aa10.77□□□□□ -0.69
USP42-206ENST00000479544 LINC01549A6NIU2 74 aa10.77□□□□□ -0.69
USP42-206ENST00000479544 A8MWV9 139 aa10.77□□□□□ -0.69
USP42-206ENST00000479544 VGLL1Q99990 258 aa10.77□□□□□ -0.69
USP42-206ENST00000479544 GEMIN7Q9H840 131 aaKnown RBP10.77□□□□□ -0.69
USP42-206ENST00000479544 ZNF492Q9P255 531 aa10.77□□□□□ -0.69
USP42-206ENST00000479544 TRBV19A0A075B6N1 114 aa10.76□□□□□ -0.69
USP42-206ENST00000479544 HAX1O00165 279 aa10.76□□□□□ -0.69
USP42-206ENST00000479544 C22orf46C9J442 243 aa10.76□□□□□ -0.69
USP42-206ENST00000479544 CCL21O00585 134 aa10.76□□□□□ -0.69
USP42-206ENST00000479544 GFRA4Q9GZZ7 299 aa10.76□□□□□ -0.69
USP42-206ENST00000479544 FASNP49327 2511 aaKnown RBP10.76□□□□□ -0.69
USP42-206ENST00000479544 USP9XQ93008 2570 aaPredicted RBP10.76□□□□□ -0.69
USP42-206ENST00000479544 TMEM131Q92545 1883 aa10.76□□□□□ -0.69
USP42-206ENST00000479544 TMEM178BH3BS89 294 aa10.76□□□□□ -0.69
USP42-206ENST00000479544 FAM159AQ6UWV7 190 aa10.76□□□□□ -0.69
USP42-206ENST00000479544 NEGR1Q7Z3B1 354 aa10.76□□□□□ -0.69
USP42-206ENST00000479544 WIPF2Q8TF74 440 aaPredicted RBP10.76□□□□□ -0.69
USP42-206ENST00000479544 ZFYVE26Q68DK2 2539 aa10.76□□□□□ -0.69
USP42-206ENST00000479544 LTAP01374 205 aa10.75□□□□□ -0.69
USP42-206ENST00000479544 ASIPP42127 132 aa10.75□□□□□ -0.69
USP42-206ENST00000479544 TMEM95Q3KNT9 176 aa10.75□□□□□ -0.69
USP42-206ENST00000479544 CT83Q5H943 113 aa10.75□□□□□ -0.69
USP42-206ENST00000479544 C15orf32Q32M92 178 aa10.75□□□□□ -0.69
USP42-206ENST00000479544 SHANK2-AS3Q9BTD1 123 aa10.75□□□□□ -0.69
USP42-206ENST00000479544 ATP5G2Q06055 141 aa10.75□□□□□ -0.69
USP42-206ENST00000479544 LGALS9BQ3B8N2 356 aa10.75□□□□□ -0.69
USP42-206ENST00000479544 LGALS9CQ6DKI2 356 aa10.75□□□□□ -0.69
USP42-206ENST00000479544 MBD3L2BA0A1B0GVZ6 204 aaPredicted RBP10.74□□□□□ -0.69
USP42-206ENST00000479544 PIP4P1Q86T03 277 aa10.74□□□□□ -0.69
USP42-206ENST00000479544 TRGV3P03979 118 aa10.74□□□□□ -0.69
USP42-206ENST00000479544 LINC01545Q5VT33 79 aa10.74□□□□□ -0.69
USP42-206ENST00000479544 NPFFR1Q9GZQ6 430 aa10.74□□□□□ -0.69
USP42-206ENST00000479544 IGKV3OR2-268A0A0C4DH90 116 aa10.73□□□□□ -0.69
USP42-206ENST00000479544 ADIPOQQ15848 244 aa10.73□□□□□ -0.69
USP42-206ENST00000479544 DLX4Q92988 240 aaPredicted RBP10.73□□□□□ -0.69
USP42-206ENST00000479544 ABHD17AQ96GS6 310 aa10.73□□□□□ -0.69
USP42-206ENST00000479544 IGHV3OR16-12A0A075B7B8 117 aa10.73□□□□□ -0.69
USP42-206ENST00000479544 GAGE2BQ13066 116 aa10.73□□□□□ -0.69
USP42-206ENST00000479544 MSMPQ1L6U9 139 aa10.73□□□□□ -0.69
USP42-206ENST00000479544 GAGE2EQ4V326 116 aa10.73□□□□□ -0.69
USP42-206ENST00000479544 GAGE2DQ9UEU5 116 aa10.73□□□□□ -0.69
USP42-206ENST00000479544 APOBEC3AP31941 199 aaPredicted RBP10.73□□□□□ -0.69
USP42-206ENST00000479544 TRANK1O15050 2925 aa10.73□□□□□ -0.69
USP42-206ENST00000479544 TRBV25-1A0A075B6N4 114 aa10.72□□□□□ -0.69
USP42-206ENST00000479544 SLC25A16P16260 332 aa10.72□□□□□ -0.69
USP42-206ENST00000479544 DDB2Q92466 427 aa10.72□□□□□ -0.69
USP42-206ENST00000479544 ATG2AQ2TAZ0 1938 aa10.72□□□□□ -0.69
USP42-206ENST00000479544 C9JAW5 83 aa10.72□□□□□ -0.69
USP42-206ENST00000479544 TMEM155Q4W5P6 130 aa10.72□□□□□ -0.69
USP42-206ENST00000479544 TSPAN13O95857 204 aa10.72□□□□□ -0.69
USP42-206ENST00000479544 PRR25Q96S07 402 aa10.72□□□□□ -0.69
USP42-206ENST00000479544 ATP6V0BQ99437 205 aa10.72□□□□□ -0.69
USP42-206ENST00000479544 EGR2P11161 476 aaPredicted RBP10.72□□□□□ -0.69
USP42-206ENST00000479544 KLRB1Q12918 225 aa10.72□□□□□ -0.69
USP42-206ENST00000479544 IL17RELQ6ZVW7 336 aa10.72□□□□□ -0.69
USP42-206ENST00000479544 CD7P09564 240 aa10.71□□□□□ -0.69
USP42-206ENST00000479544 BUB1B-PAK6H3BSN5 160 aa10.71□□□□□ -0.69
USP42-206ENST00000479544 TMEM219Q86XT9 240 aa10.71□□□□□ -0.69
Retrieved 100 of 20,778 RNA–protein pairs in 86 ms