RNA–Protein interactions for RNA: ENST00000472760.1

PRPF40A-208, Transcript of pre-mRNA processing factor 40 homolog A, humanhuman

TSL 2

Gene PRPF40A, Length 243 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PRPF40A-208ENST00000472760 AP1S3Q96PC3 154 aa0.71□□□□□ -2.3
PRPF40A-208ENST00000472760 TET1Q8NFU7 2136 aa0.71□□□□□ -2.3
PRPF40A-208ENST00000472760 CITO14578 2027 aa0.71□□□□□ -2.3
PRPF40A-208ENST00000472760 ASCC3Q8N3C0 2202 aaKnown RBP0.7□□□□□ -2.3
PRPF40A-208ENST00000472760 Q6ZS92 163 aa0.7□□□□□ -2.3
PRPF40A-208ENST00000472760 CLEC2BQ92478 149 aa0.7□□□□□ -2.3
PRPF40A-208ENST00000472760 CCL19Q99731 98 aa0.7□□□□□ -2.3
PRPF40A-208ENST00000472760 AHNAKQ09666 5890 aaKnown RBP0.7□□□□□ -2.3
PRPF40A-208ENST00000472760 CHD3Q12873 2000 aaKnown RBP0.69□□□□□ -2.3
PRPF40A-208ENST00000472760 A0A1W2PRE2 83 aa0.69□□□□□ -2.3
PRPF40A-208ENST00000472760 ZNF137PP52743 207 aa0.69□□□□□ -2.3
PRPF40A-208ENST00000472760 FXYD6P3P58550 94 aa0.69□□□□□ -2.3
PRPF40A-208ENST00000472760 MAXP61244 160 aa0.69□□□□□ -2.3
PRPF40A-208ENST00000472760 LINC00305Q7Z4B0 112 aa0.69□□□□□ -2.3
PRPF40A-208ENST00000472760 C5orf17Q8NAS9 161 aa0.69□□□□□ -2.3
PRPF40A-208ENST00000472760 RMND5BQ96G75 393 aaPredicted RBP0.69□□□□□ -2.3
PRPF40A-208ENST00000472760 E7EQ34 232 aa0.68□□□□□ -2.3
PRPF40A-208ENST00000472760 NEFHP12036 1026 aa0.68□□□□□ -2.3
PRPF40A-208ENST00000472760 KDELR1P24390 212 aa0.68□□□□□ -2.3
PRPF40A-208ENST00000472760 C6orf52Q5T4I8 152 aa0.68□□□□□ -2.3
PRPF40A-208ENST00000472760 C10orf111Q8N326 155 aa0.68□□□□□ -2.3
PRPF40A-208ENST00000472760 CIB3Q96Q77 187 aaPredicted RBP0.68□□□□□ -2.3
PRPF40A-208ENST00000472760 LPAR5Q9H1C0 372 aa0.68□□□□□ -2.3
PRPF40A-208ENST00000472760 V9GYQ6 96 aa0.68□□□□□ -2.3
PRPF40A-208ENST00000472760 SULT1C4O75897 302 aa0.67□□□□□ -2.3
PRPF40A-208ENST00000472760 FAM107AO95990 144 aa0.67□□□□□ -2.3
PRPF40A-208ENST00000472760 SAA1P0DJI8 122 aaPredicted RBP0.67□□□□□ -2.3
PRPF40A-208ENST00000472760 CCL4P13236 92 aa0.67□□□□□ -2.3
PRPF40A-208ENST00000472760 TEX29Q8N6K0 151 aa0.67□□□□□ -2.3
PRPF40A-208ENST00000472760 LXNQ9BS40 222 aa0.67□□□□□ -2.3
PRPF40A-208ENST00000472760 MYH2Q9UKX2 1941 aa0.67□□□□□ -2.3
PRPF40A-208ENST00000472760 DLC1Q96QB1 1528 aa0.67□□□□□ -2.3
PRPF40A-208ENST00000472760 TRBV27A0A0K0K1C4 114 aa0.66□□□□□ -2.3
PRPF40A-208ENST00000472760 A0A1B0GV72 72 aa0.66□□□□□ -2.3
PRPF40A-208ENST00000472760 BBIP1A8MTZ0 92 aa0.66□□□□□ -2.3
PRPF40A-208ENST00000472760 IGHV3-30P01768 117 aa0.66□□□□□ -2.3
PRPF40A-208ENST00000472760 IGHV3-30-5P0DP03 117 aa0.66□□□□□ -2.3
PRPF40A-208ENST00000472760 S100A5P33763 92 aa0.66□□□□□ -2.3
PRPF40A-208ENST00000472760 HRCT1Q6UXD1 115 aa0.66□□□□□ -2.3
PRPF40A-208ENST00000472760 JPT1Q9UK76 154 aa0.66□□□□□ -2.3
PRPF40A-208ENST00000472760 ZCCHC11Q5TAX3 1644 aaKnown RBP0.66□□□□□ -2.3
PRPF40A-208ENST00000472760 TCOF1Q13428 1488 aaKnown RBP0.66□□□□□ -2.3
PRPF40A-208ENST00000472760 TRAV13-1A0A0B4J241 112 aa0.65□□□□□ -2.31
PRPF40A-208ENST00000472760 LOC107986453A0A1B0GWG9 222 aa0.65□□□□□ -2.31
PRPF40A-208ENST00000472760 FABP1P07148 127 aa0.65□□□□□ -2.31
PRPF40A-208ENST00000472760 FKBP11Q9NYL4 201 aa0.65□□□□□ -2.31
PRPF40A-208ENST00000472760 MED31Q9Y3C7 131 aa0.65□□□□□ -2.31
PRPF40A-208ENST00000472760 LOC107984156A0A0G2JMH3 177 aa0.64□□□□□ -2.31
PRPF40A-208ENST00000472760 ARL5CA6NH57 179 aa0.64□□□□□ -2.31
PRPF40A-208ENST00000472760 A6NN06 94 aa0.64□□□□□ -2.31
PRPF40A-208ENST00000472760 RPS3P23396 243 aaKnown RBP eCLIP0.64□□□□□ -2.31
PRPF40A-208ENST00000472760 SRP9P49458 86 aaKnown RBP0.64□□□□□ -2.31
PRPF40A-208ENST00000472760 SNRPD3P62318 126 aaKnown RBP0.64□□□□□ -2.31
PRPF40A-208ENST00000472760 IZUMO2Q6UXV1 221 aa0.64□□□□□ -2.31
PRPF40A-208ENST00000472760 C3orf62Q6ZUJ4 267 aa0.64□□□□□ -2.31
PRPF40A-208ENST00000472760 ARL17AQ8IVW1 177 aa0.64□□□□□ -2.31
PRPF40A-208ENST00000472760 TCTEX1D1Q8N7M0 179 aa0.64□□□□□ -2.31
PRPF40A-208ENST00000472760 TMEM229BQ8NBD8 167 aa0.64□□□□□ -2.31
PRPF40A-208ENST00000472760 THEM6Q8WUY1 208 aa0.64□□□□□ -2.31
PRPF40A-208ENST00000472760 PLAC4Q8WY50 150 aa0.64□□□□□ -2.31
PRPF40A-208ENST00000472760 NABP2Q9BQ15 211 aa0.64□□□□□ -2.31
PRPF40A-208ENST00000472760 TRAV16A0A0A6YYK6 109 aaPredicted RBP0.63□□□□□ -2.31
PRPF40A-208ENST00000472760 H3BMG7 143 aa0.63□□□□□ -2.31
PRPF40A-208ENST00000472760 GYPBP06028 91 aa0.63□□□□□ -2.31
PRPF40A-208ENST00000472760 CAV3P56539 151 aa0.63□□□□□ -2.31
PRPF40A-208ENST00000472760 SPINK7P58062 85 aa0.63□□□□□ -2.31
PRPF40A-208ENST00000472760 MORN4Q8NDC4 146 aa0.63□□□□□ -2.31
PRPF40A-208ENST00000472760 CENPHQ9H3R5 247 aa0.63□□□□□ -2.31
PRPF40A-208ENST00000472760 TRAPPC2LQ9UL33 140 aa0.63□□□□□ -2.31
PRPF40A-208ENST00000472760 FANCMQ8IYD8 2048 aa0.63□□□□□ -2.31
PRPF40A-208ENST00000472760 TRBV7-6A0A0J9YX20 115 aa0.62□□□□□ -2.31
PRPF40A-208ENST00000472760 POLR2HP52434 150 aaKnown RBP0.62□□□□□ -2.31
PRPF40A-208ENST00000472760 DNAJB13P59910 316 aa0.62□□□□□ -2.31
PRPF40A-208ENST00000472760 SMPXQ9UHP9 88 aa0.62□□□□□ -2.31
PRPF40A-208ENST00000472760 MPC1Q9Y5U8 109 aa0.62□□□□□ -2.31
PRPF40A-208ENST00000472760 FGD6Q6ZV73 1430 aa0.62□□□□□ -2.31
PRPF40A-208ENST00000472760 DSPPQ9NZW4 1301 aa0.62□□□□□ -2.31
PRPF40A-208ENST00000472760 A0A1W2PPB8 328 aa0.61□□□□□ -2.31
PRPF40A-208ENST00000472760 A0A1W2PRS3 328 aa0.61□□□□□ -2.31
PRPF40A-208ENST00000472760 KIR3DP1A8MWS1 328 aa0.61□□□□□ -2.31
PRPF40A-208ENST00000472760 IFNA21P01568 189 aa0.61□□□□□ -2.31
PRPF40A-208ENST00000472760 CRYGSP22914 178 aa0.61□□□□□ -2.31
PRPF40A-208ENST00000472760 QRFPP83859 136 aa0.61□□□□□ -2.31
PRPF40A-208ENST00000472760 KRTAP21-1Q3LI58 79 aa0.61□□□□□ -2.31
PRPF40A-208ENST00000472760 XAF1Q6GPH4 301 aa0.61□□□□□ -2.31
PRPF40A-208ENST00000472760 SREK1IP1Q8N9Q2 155 aaPredicted RBP0.61□□□□□ -2.31
PRPF40A-208ENST00000472760 OR51A4Q8NGJ6 313 aa0.61□□□□□ -2.31
PRPF40A-208ENST00000472760 PLAC8Q9NZF1 115 aa0.61□□□□□ -2.31
PRPF40A-208ENST00000472760 MUC4Q99102 2169 aa0.61□□□□□ -2.31
PRPF40A-208ENST00000472760 MYH3P11055 1940 aa0.61□□□□□ -2.31
PRPF40A-208ENST00000472760 PTPRDP23468 1912 aa0.6□□□□□ -2.31
PRPF40A-208ENST00000472760 ZFC3H1O60293 1989 aaKnown RBP0.6□□□□□ -2.31
PRPF40A-208ENST00000472760 LOC107984640A0A0U1RRK4 108 aa0.6□□□□□ -2.31
PRPF40A-208ENST00000472760 PRORSD1PA6NEY8 169 aa0.6□□□□□ -2.31
PRPF40A-208ENST00000472760 EDF1O60869 148 aaKnown RBP0.6□□□□□ -2.31
PRPF40A-208ENST00000472760 PRH1P02810 166 aa0.6□□□□□ -2.31
PRPF40A-208ENST00000472760 CCSMST1Q4G0I0 132 aa0.6□□□□□ -2.31
PRPF40A-208ENST00000472760 CSAG1Q6PB30 78 aa0.6□□□□□ -2.31
PRPF40A-208ENST00000472760 FAM135BQ49AJ0 1406 aa0.6□□□□□ -2.31
PRPF40A-208ENST00000472760 ANKRD31Q8N7Z5 1873 aa0.59□□□□□ -2.31
Retrieved 100 of 20,778 RNA–protein pairs in 56 ms