RNA–Protein interactions for RNA: ENST00000466732.2

VPS13D-203, Transcript of vacuolar protein sorting 13 homolog D, humanhuman

TSL 5

Gene VPS13D, Length 377 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13D-203ENST00000466732 KCNE3Q9Y6H6 103 aa2.36□□□□□ -2.03
VPS13D-203ENST00000466732 ARL2-SNX15V9GYD0 113 aa2.36□□□□□ -2.03
VPS13D-203ENST00000466732 NUP214P35658 2090 aaPredicted RBP2.36□□□□□ -2.03
VPS13D-203ENST00000466732 DOCK11Q5JSL3 2073 aa2.36□□□□□ -2.03
VPS13D-203ENST00000466732 GREB1Q4ZG55 1949 aa2.36□□□□□ -2.03
VPS13D-203ENST00000466732 THADAQ6YHU6 1953 aa2.36□□□□□ -2.03
VPS13D-203ENST00000466732 PAPPA2Q9BXP8 1791 aa2.36□□□□□ -2.03
VPS13D-203ENST00000466732 ARID1AO14497 2285 aa2.35□□□□□ -2.03
VPS13D-203ENST00000466732 TRAV12-2A0A075B6T6 113 aa2.35□□□□□ -2.03
VPS13D-203ENST00000466732 FAM24AA6NFZ4 105 aa2.35□□□□□ -2.03
VPS13D-203ENST00000466732 FGF1P05230 155 aa2.35□□□□□ -2.03
VPS13D-203ENST00000466732 PYYP10082 97 aa2.35□□□□□ -2.03
VPS13D-203ENST00000466732 PTGDSP41222 190 aa2.35□□□□□ -2.03
VPS13D-203ENST00000466732 CCL20P78556 96 aa2.35□□□□□ -2.03
VPS13D-203ENST00000466732 SP4Q02446 784 aa2.35□□□□□ -2.03
VPS13D-203ENST00000466732 RPL18AQ02543 176 aaKnown RBP2.35□□□□□ -2.03
VPS13D-203ENST00000466732 ARFRP1Q13795 201 aa2.35□□□□□ -2.03
VPS13D-203ENST00000466732 SP6Q3SY56 376 aa2.35□□□□□ -2.03
VPS13D-203ENST00000466732 ZNF678Q5SXM1 525 aa2.35□□□□□ -2.03
VPS13D-203ENST00000466732 CFAP126Q5VTH2 177 aa2.35□□□□□ -2.03
VPS13D-203ENST00000466732 C22orf39Q6P5X5 142 aa2.35□□□□□ -2.03
VPS13D-203ENST00000466732 Q6ZRU5 148 aa2.35□□□□□ -2.03
VPS13D-203ENST00000466732 MSRB3Q8IXL7 192 aa2.35□□□□□ -2.03
VPS13D-203ENST00000466732 C20orf203Q8NBC4 194 aa2.35□□□□□ -2.03
VPS13D-203ENST00000466732 LMX1AQ8TE12 382 aa2.35□□□□□ -2.03
VPS13D-203ENST00000466732 TSKUQ8WUA8 353 aa2.35□□□□□ -2.03
VPS13D-203ENST00000466732 IL1F10Q8WWZ1 152 aa2.35□□□□□ -2.03
VPS13D-203ENST00000466732 KLK6Q92876 244 aa2.35□□□□□ -2.03
VPS13D-203ENST00000466732 FAM19A4Q96LR4 140 aa2.35□□□□□ -2.03
VPS13D-203ENST00000466732 MCEEQ96PE7 176 aa2.35□□□□□ -2.03
VPS13D-203ENST00000466732 OR2A5Q96R48 311 aa2.35□□□□□ -2.03
VPS13D-203ENST00000466732 SMIM7Q9BQ49 75 aa2.35□□□□□ -2.03
VPS13D-203ENST00000466732 SHANK2-AS3Q9BTD1 123 aa2.35□□□□□ -2.03
VPS13D-203ENST00000466732 GNB1LQ9BYB4 327 aa2.35□□□□□ -2.03
VPS13D-203ENST00000466732 PARP12Q9H0J9 701 aaKnown RBP2.35□□□□□ -2.03
VPS13D-203ENST00000466732 RPUSD1Q9UJJ7 312 aaKnown RBP2.35□□□□□ -2.03
VPS13D-203ENST00000466732 PCDH15Q96QU1 1955 aa2.35□□□□□ -2.03
VPS13D-203ENST00000466732 COL11A1P12107 1806 aaPredicted RBP2.35□□□□□ -2.03
VPS13D-203ENST00000466732 ATG2BQ96BY7 2078 aa2.34□□□□□ -2.03
VPS13D-203ENST00000466732 BRWD3Q6RI45 1802 aa2.34□□□□□ -2.03
VPS13D-203ENST00000466732 TRBV19A0A075B6N1 114 aa2.34□□□□□ -2.03
VPS13D-203ENST00000466732 SMIM26A0A096LP01 95 aa2.34□□□□□ -2.03
VPS13D-203ENST00000466732 IZUMO1RA6ND01 250 aa2.34□□□□□ -2.03
VPS13D-203ENST00000466732 C2orf70A6NJV1 201 aa2.34□□□□□ -2.03
VPS13D-203ENST00000466732 KNCNA6PVL3 124 aa2.34□□□□□ -2.03
VPS13D-203ENST00000466732 IGLL5B9A064 214 aa2.34□□□□□ -2.03
VPS13D-203ENST00000466732 CPSF4O95639 269 aaKnown RBP2.34□□□□□ -2.03
VPS13D-203ENST00000466732 APCSP02743 223 aa2.34□□□□□ -2.03
VPS13D-203ENST00000466732 LGALS2P05162 132 aa2.34□□□□□ -2.03
VPS13D-203ENST00000466732 AQP1P29972 269 aa2.34□□□□□ -2.03
VPS13D-203ENST00000466732 CSN1S1P47710 185 aa2.34□□□□□ -2.03
VPS13D-203ENST00000466732 APOC4P55056 127 aa2.34□□□□□ -2.03
VPS13D-203ENST00000466732 GFERP55789 205 aa2.34□□□□□ -2.03
VPS13D-203ENST00000466732 FBXW4P57775 412 aa2.34□□□□□ -2.03
VPS13D-203ENST00000466732 LINC00315P59091 139 aa2.34□□□□□ -2.03
VPS13D-203ENST00000466732 DYNLT1P63172 113 aa2.34□□□□□ -2.03
VPS13D-203ENST00000466732 CDK5R1Q15078 307 aa2.34□□□□□ -2.03
VPS13D-203ENST00000466732 ELOCQ15369 112 aa2.34□□□□□ -2.03
VPS13D-203ENST00000466732 RTL8BQ17RB0 113 aa2.34□□□□□ -2.03
VPS13D-203ENST00000466732 ZNF791Q3KP31 576 aaPredicted RBP2.34□□□□□ -2.03
VPS13D-203ENST00000466732 PSMG4Q5JS54 123 aa2.34□□□□□ -2.03
VPS13D-203ENST00000466732 NOXRED1Q6NXP6 359 aa2.34□□□□□ -2.03
VPS13D-203ENST00000466732 Q6ZS49 121 aa2.34□□□□□ -2.03
VPS13D-203ENST00000466732 DAZ4Q86SG3 579 aaKnown RBP2.34□□□□□ -2.03
VPS13D-203ENST00000466732 HMGN2P46Q86SG4 172 aa2.34□□□□□ -2.03
VPS13D-203ENST00000466732 TRAPPC6BQ86SZ2 158 aa2.34□□□□□ -2.03
VPS13D-203ENST00000466732 TMEM150AQ86TG1 271 aa2.34□□□□□ -2.03
VPS13D-203ENST00000466732 PRR15Q8IV56 129 aa2.34□□□□□ -2.03
VPS13D-203ENST00000466732 SBSPONQ8IVN8 264 aa2.34□□□□□ -2.03
VPS13D-203ENST00000466732 AMN1Q8IY45 258 aa2.34□□□□□ -2.03
VPS13D-203ENST00000466732 LINC00311Q8N616 119 aa2.34□□□□□ -2.03
VPS13D-203ENST00000466732 TMEM252Q8N6L7 170 aa2.34□□□□□ -2.03
VPS13D-203ENST00000466732 C15orf53Q8NAA6 179 aa2.34□□□□□ -2.03
VPS13D-203ENST00000466732 OR2A1Q8NGT9 310 aa2.34□□□□□ -2.03
VPS13D-203ENST00000466732 ZNF563Q8TA94 476 aa2.34□□□□□ -2.03
VPS13D-203ENST00000466732 MYOZ3Q8TDC0 251 aa2.34□□□□□ -2.03
VPS13D-203ENST00000466732 BRK1Q8WUW1 75 aa2.34□□□□□ -2.03
VPS13D-203ENST00000466732 COPS9Q8WXC6 57 aa2.34□□□□□ -2.03
VPS13D-203ENST00000466732 FGF11Q92914 225 aa2.34□□□□□ -2.03
VPS13D-203ENST00000466732 EEF1AKMT3Q96AZ1 226 aa2.34□□□□□ -2.03
VPS13D-203ENST00000466732 IGF2BP2-AS1Q96M15 143 aa2.34□□□□□ -2.03
VPS13D-203ENST00000466732 C18orf15Q96N68 181 aa2.34□□□□□ -2.03
VPS13D-203ENST00000466732 RTL8AQ9BWD3 113 aa2.34□□□□□ -2.03
VPS13D-203ENST00000466732 DAZ1Q9NQZ3 744 aaKnown RBP2.34□□□□□ -2.03
VPS13D-203ENST00000466732 OTORQ9NRC9 128 aa2.34□□□□□ -2.03
VPS13D-203ENST00000466732 SLC39A9Q9NUM3 307 aa2.34□□□□□ -2.03
VPS13D-203ENST00000466732 HIGD1BQ9P298 99 aa2.34□□□□□ -2.03
VPS13D-203ENST00000466732 PCTPQ9UKL6 214 aa2.34□□□□□ -2.03
VPS13D-203ENST00000466732 KLK5Q9Y337 293 aaPredicted RBP2.34□□□□□ -2.03
VPS13D-203ENST00000466732 AMMECR1Q9Y4X0 333 aaPredicted RBP2.34□□□□□ -2.03
VPS13D-203ENST00000466732 HILPDAQ9Y5L2 63 aa2.34□□□□□ -2.03
VPS13D-203ENST00000466732 SERP1Q9Y6X1 66 aa2.34□□□□□ -2.03
VPS13D-203ENST00000466732 THSD7BQ9C0I4 1608 aa2.34□□□□□ -2.04
VPS13D-203ENST00000466732 KCPQ6ZWJ8 1503 aa2.33□□□□□ -2.04
VPS13D-203ENST00000466732 PLXNA2O75051 1894 aa2.33□□□□□ -2.04
VPS13D-203ENST00000466732 PTPRSQ13332 1948 aa2.33□□□□□ -2.04
VPS13D-203ENST00000466732 EML6Q6ZMW3 1958 aa2.33□□□□□ -2.04
VPS13D-203ENST00000466732 TRAV2A0A0B4J234 112 aa2.33□□□□□ -2.04
VPS13D-203ENST00000466732 LOC100131303A0A0U1RQF7 123 aa2.33□□□□□ -2.04
VPS13D-203ENST00000466732 A8MWV9 139 aa2.33□□□□□ -2.04
Retrieved 100 of 20,778 RNA–protein pairs in 37.8 ms