RNA–Protein interactions for RNA: ENST00000463837.5

CCDC88B-204, Transcript of coiled-coil domain containing 88B, humanhuman

TSL 2

Gene CCDC88B, Length 5,235 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-204ENST00000463837 ZNF688P0C7X2 276 aa15.22■□□□□ 0.03
CCDC88B-204ENST00000463837 S100A7L2Q5SY68 101 aa15.22■□□□□ 0.03
CCDC88B-204ENST00000463837 PRR25Q96S07 402 aa15.22■□□□□ 0.03
CCDC88B-204ENST00000463837 SPANXDQ9BXN6 97 aa15.22■□□□□ 0.03
CCDC88B-204ENST00000463837 TRAV8-3A0A0A6YYJ7 113 aa15.22■□□□□ 0.03
CCDC88B-204ENST00000463837 TSSC4Q9Y5U2 329 aaPredicted RBP15.22■□□□□ 0.03
CCDC88B-204ENST00000463837 HELZP42694 1942 aaKnown RBP15.22■□□□□ 0.03
CCDC88B-204ENST00000463837 TRGV4A0A0C4DH28 118 aa15.22■□□□□ 0.03
CCDC88B-204ENST00000463837 IGLV1-44P01699 117 aa15.22■□□□□ 0.03
CCDC88B-204ENST00000463837 WT1-ASQ06250 92 aa15.22■□□□□ 0.03
CCDC88B-204ENST00000463837 TRPT1Q86TN4 253 aaKnown RBP15.22■□□□□ 0.03
CCDC88B-204ENST00000463837 C11orf44Q8N8P7 122 aa15.22■□□□□ 0.03
CCDC88B-204ENST00000463837 COL4A6Q14031 1691 aa15.22■□□□□ 0.03
CCDC88B-204ENST00000463837 KRTAP27-1Q3LI81 207 aa15.21■□□□□ 0.03
CCDC88B-204ENST00000463837 A0A087WWL8 130 aa15.21■□□□□ 0.03
CCDC88B-204ENST00000463837 GATD1Q8NB37 220 aa15.21■□□□□ 0.03
CCDC88B-204ENST00000463837 CHCHD5Q9BSY4 110 aa15.21■□□□□ 0.03
CCDC88B-204ENST00000463837 FCN3O75636 299 aa15.21■□□□□ 0.03
CCDC88B-204ENST00000463837 ETDBQ3ZM63 59 aa15.21■□□□□ 0.03
CCDC88B-204ENST00000463837 C2orf66Q6UXQ4 117 aa15.21■□□□□ 0.03
CCDC88B-204ENST00000463837 K7ENP7 123 aa15.2■□□□□ 0.02
CCDC88B-204ENST00000463837 RPL36AP83881 106 aaKnown RBP15.2■□□□□ 0.02
CCDC88B-204ENST00000463837 RPL36ALQ969Q0 106 aaKnown RBP15.2■□□□□ 0.02
CCDC88B-204ENST00000463837 MYO7BQ6PIF6 2116 aa15.2■□□□□ 0.02
CCDC88B-204ENST00000463837 FRMPD3Q5JV73 1810 aa15.2■□□□□ 0.02
CCDC88B-204ENST00000463837 LY6G6EA0A0G2JKS1 128 aa15.2■□□□□ 0.02
CCDC88B-204ENST00000463837 HIST1H4AP62805 103 aaKnown RBP15.2■□□□□ 0.02
CCDC88B-204ENST00000463837 KLF12Q9Y4X4 402 aa15.2■□□□□ 0.02
CCDC88B-204ENST00000463837 U3KQA8 63 aa15.2■□□□□ 0.02
CCDC88B-204ENST00000463837 H3BUX3 64 aa15.2■□□□□ 0.02
CCDC88B-204ENST00000463837 SPXQ9BT56 116 aa15.2■□□□□ 0.02
CCDC88B-204ENST00000463837 SAP30O75446 220 aa15.19■□□□□ 0.02
CCDC88B-204ENST00000463837 ZNF134P52741 427 aa15.19■□□□□ 0.02
CCDC88B-204ENST00000463837 C11orf68Q9H3H3 251 aaKnown RBP15.19■□□□□ 0.02
CCDC88B-204ENST00000463837 CDKN1BP46527 198 aa15.19■□□□□ 0.02
CCDC88B-204ENST00000463837 PMVKQ15126 192 aa15.19■□□□□ 0.02
CCDC88B-204ENST00000463837 DTX1Q86Y01 620 aa15.19■□□□□ 0.02
CCDC88B-204ENST00000463837 CEND1Q8N111 149 aa15.19■□□□□ 0.02
CCDC88B-204ENST00000463837 NBASA2RRP1 2371 aa15.19■□□□□ 0.02
CCDC88B-204ENST00000463837 C8orf31Q8N9H6 132 aa15.19■□□□□ 0.02
CCDC88B-204ENST00000463837 LINC01356Q8N9X3 169 aa15.18■□□□□ 0.02
CCDC88B-204ENST00000463837 ZC2HC1AQ96GY0 325 aa15.18■□□□□ 0.02
CCDC88B-204ENST00000463837 RHPN1-AS1Q9BWJ2 59 aa15.18■□□□□ 0.02
CCDC88B-204ENST00000463837 DAZ1Q9NQZ3 744 aaKnown RBP15.18■□□□□ 0.02
CCDC88B-204ENST00000463837 PAX4O43316 350 aa15.18■□□□□ 0.02
CCDC88B-204ENST00000463837 COL8A2P25067 703 aa15.18■□□□□ 0.02
CCDC88B-204ENST00000463837 IL17RELQ6ZVW7 336 aa15.18■□□□□ 0.02
CCDC88B-204ENST00000463837 LEPROTO15243 131 aa15.17■□□□□ 0.02
CCDC88B-204ENST00000463837 HLA-DRB4P13762 266 aa15.17■□□□□ 0.02
CCDC88B-204ENST00000463837 Q6ZVH6 145 aa15.17■□□□□ 0.02
CCDC88B-204ENST00000463837 TP53TG1Q9Y2A0 90 aa15.17■□□□□ 0.02
CCDC88B-204ENST00000463837 HLA-DRB4X5D2U9 266 aa15.17■□□□□ 0.02
CCDC88B-204ENST00000463837 IGLV3-9A0A075B6K5 115 aa15.17■□□□□ 0.02
CCDC88B-204ENST00000463837 DEFB125Q8N687 156 aa15.17■□□□□ 0.02
CCDC88B-204ENST00000463837 IGLC1P0CG04 106 aa15.16■□□□□ 0.02
CCDC88B-204ENST00000463837 ZNF747Q9BV97 191 aa15.16■□□□□ 0.02
CCDC88B-204ENST00000463837 GATA3P23771 443 aa15.16■□□□□ 0.02
CCDC88B-204ENST00000463837 PRADC1Q9BSG0 188 aa15.16■□□□□ 0.02
CCDC88B-204ENST00000463837 E7EQL1 145 aa15.16■□□□□ 0.02
CCDC88B-204ENST00000463837 RNF114Q9Y508 228 aa15.16■□□□□ 0.02
CCDC88B-204ENST00000463837 F8VRH5 84 aa15.16■□□□□ 0.02
CCDC88B-204ENST00000463837 CACNA1HO95180 2353 aa15.15■□□□□ 0.02
CCDC88B-204ENST00000463837 LOXP28300 417 aaPredicted RBP15.15■□□□□ 0.02
CCDC88B-204ENST00000463837 DOCK8Q8NF50 2099 aa15.15■□□□□ 0.02
CCDC88B-204ENST00000463837 NPYP01303 97 aa15.15■□□□□ 0.02
CCDC88B-204ENST00000463837 EDA2RQ9HAV5 297 aa15.15■□□□□ 0.02
CCDC88B-204ENST00000463837 DOCK7Q96N67 2140 aa15.15■□□□□ 0.02
CCDC88B-204ENST00000463837 H3BMM0 161 aa15.15■□□□□ 0.02
CCDC88B-204ENST00000463837 UBE2WQ96B02 151 aa15.15■□□□□ 0.02
CCDC88B-204ENST00000463837 VGLL1Q99990 258 aa15.14■□□□□ 0.01
CCDC88B-204ENST00000463837 SP5Q6BEB4 398 aaPredicted RBP15.14■□□□□ 0.01
CCDC88B-204ENST00000463837 C1orf159Q96HA4 380 aa15.14■□□□□ 0.01
CCDC88B-204ENST00000463837 C20orf78Q9BR46 151 aa15.14■□□□□ 0.01
CCDC88B-204ENST00000463837 NDUFS7O75251 213 aa15.14■□□□□ 0.01
CCDC88B-204ENST00000463837 BRD3OSQ6XYD6 125 aa15.14■□□□□ 0.01
CCDC88B-204ENST00000463837 SMIM2Q9BVW6 85 aa15.14■□□□□ 0.01
CCDC88B-204ENST00000463837 PLXNB3Q9ULL4 1909 aa15.14■□□□□ 0.01
CCDC88B-204ENST00000463837 DUX4L9Q6RFH8 374 aaPredicted RBP15.13■□□□□ 0.01
CCDC88B-204ENST00000463837 YLPM1P49750 1951 aaKnown RBP15.13■□□□□ 0.01
CCDC88B-204ENST00000463837 ZNF407Q9C0G0 2248 aa15.13■□□□□ 0.01
CCDC88B-204ENST00000463837 IGHV2-70DA0A0C4DH43 119 aa15.13■□□□□ 0.01
CCDC88B-204ENST00000463837 LY6HO94772 140 aa15.13■□□□□ 0.01
CCDC88B-204ENST00000463837 UBE2E1P51965 193 aa15.13■□□□□ 0.01
CCDC88B-204ENST00000463837 MRPL35Q9NZE8 188 aaKnown RBP15.13■□□□□ 0.01
CCDC88B-204ENST00000463837 GAGE12HA6NDE8 117 aa15.13■□□□□ 0.01
CCDC88B-204ENST00000463837 K7EMI3 77 aa15.13■□□□□ 0.01
CCDC88B-204ENST00000463837 C1QTNF4Q9BXJ3 329 aa15.13■□□□□ 0.01
CCDC88B-204ENST00000463837 TANC1Q9C0D5 1861 aa15.13■□□□□ 0.01
CCDC88B-204ENST00000463837 DNAJC30Q96LL9 226 aa15.12■□□□□ 0.01
CCDC88B-204ENST00000463837 PIP4P2Q8N4L2 257 aa15.12■□□□□ 0.01
CCDC88B-204ENST00000463837 ZNF625Q96I27 306 aaPredicted RBP15.12■□□□□ 0.01
CCDC88B-204ENST00000463837 BPESC1Q9GZL8 116 aa15.12■□□□□ 0.01
CCDC88B-204ENST00000463837 RHODO00212 210 aa15.12■□□□□ 0.01
CCDC88B-204ENST00000463837 GAGE2AQ6NT46 116 aa15.12■□□□□ 0.01
CCDC88B-204ENST00000463837 INSP01308 110 aa15.12■□□□□ 0.01
CCDC88B-204ENST00000463837 TRGV1A0A0A0MS02 117 aa15.11■□□□□ 0.01
CCDC88B-204ENST00000463837 TRAV13-1A0A0B4J241 112 aa15.11■□□□□ 0.01
CCDC88B-204ENST00000463837 TRAV26-2A0A0B4J265 109 aa15.11■□□□□ 0.01
CCDC88B-204ENST00000463837 K7ERJ3 54 aa15.11■□□□□ 0.01
CCDC88B-204ENST00000463837 IGHV3-53P01767 116 aa15.11■□□□□ 0.01
Retrieved 100 of 20,778 RNA–protein pairs in 62.4 ms