RNA–Protein interactions for RNA: ENST00000437048.6

VPS53-204, Transcript of VPS53, GARP complex subunit, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VPS53, Length 13,106 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-204ENST00000437048 NPIPB5A8MRT5 1133 aa5.85□□□□□ -1.47
VPS53-204ENST00000437048 EGR1P18146 543 aa5.85□□□□□ -1.47
VPS53-204ENST00000437048 MST1LQ2TV78 715 aa5.85□□□□□ -1.47
VPS53-204ENST00000437048 CCL21O00585 134 aa5.85□□□□□ -1.47
VPS53-204ENST00000437048 THAP8Q8NA92 274 aa5.85□□□□□ -1.47
VPS53-204ENST00000437048 TANC1Q9C0D5 1861 aa5.84□□□□□ -1.47
VPS53-204ENST00000437048 RNASE6Q93091 150 aaKnown RBP5.84□□□□□ -1.47
VPS53-204ENST00000437048 IGKV3-7A0A075B6H7 116 aa5.84□□□□□ -1.47
VPS53-204ENST00000437048 hDV102S1A0JD36 115 aa5.84□□□□□ -1.47
VPS53-204ENST00000437048 RCHY1Q96PM5 261 aa5.84□□□□□ -1.47
VPS53-204ENST00000437048 TRBV25-1A0A075B6N4 114 aa5.84□□□□□ -1.47
VPS53-204ENST00000437048 TMEM92Q6UXU6 159 aa5.84□□□□□ -1.47
VPS53-204ENST00000437048 NDUFA12Q9UI09 145 aa5.84□□□□□ -1.47
VPS53-204ENST00000437048 H0YJW9 148 aa5.84□□□□□ -1.47
VPS53-204ENST00000437048 C1orf122Q6ZSJ8 110 aa5.84□□□□□ -1.47
VPS53-204ENST00000437048 TRAV41A0A0B4J266 112 aa5.84□□□□□ -1.47
VPS53-204ENST00000437048 C12orf74Q32Q52 190 aa5.84□□□□□ -1.47
VPS53-204ENST00000437048 LCN12Q6JVE5 192 aa5.84□□□□□ -1.47
VPS53-204ENST00000437048 ZNF826PQ6ZT77 177 aa5.84□□□□□ -1.47
VPS53-204ENST00000437048 PMS2P5A8MQ11 134 aa5.84□□□□□ -1.47
VPS53-204ENST00000437048 CCL4P13236 92 aa5.84□□□□□ -1.47
VPS53-204ENST00000437048 LINC01620Q4KN68 170 aa5.84□□□□□ -1.47
VPS53-204ENST00000437048 LSM4Q9Y4Z0 139 aaKnown RBP5.84□□□□□ -1.47
VPS53-204ENST00000437048 TET2Q6N021 2002 aaPredicted RBP5.84□□□□□ -1.47
VPS53-204ENST00000437048 SAP25Q8TEE9 199 aa5.84□□□□□ -1.47
VPS53-204ENST00000437048 TMEM243Q9BU79 118 aa5.84□□□□□ -1.47
VPS53-204ENST00000437048 PYYP10082 97 aa5.84□□□□□ -1.48
VPS53-204ENST00000437048 FOXF2Q12947 444 aa5.84□□□□□ -1.48
VPS53-204ENST00000437048 C15orf32Q32M92 178 aa5.84□□□□□ -1.48
VPS53-204ENST00000437048 WFDC3Q8IUB2 231 aa5.84□□□□□ -1.48
VPS53-204ENST00000437048 A0A087WV48 116 aa5.84□□□□□ -1.48
VPS53-204ENST00000437048 PRB3Q04118 309 aaPredicted RBP5.84□□□□□ -1.48
VPS53-204ENST00000437048 G3V4G9 280 aa5.83□□□□□ -1.48
VPS53-204ENST00000437048 APELAP0DMC3 54 aa5.83□□□□□ -1.48
VPS53-204ENST00000437048 TMEM256-PLSCR3K7ERE1 68 aa5.83□□□□□ -1.48
VPS53-204ENST00000437048 LYPD3O95274 346 aa5.83□□□□□ -1.48
VPS53-204ENST00000437048 ZNF114Q8NC26 417 aa5.83□□□□□ -1.48
VPS53-204ENST00000437048 ZNF319Q9P2F9 582 aa5.83□□□□□ -1.48
VPS53-204ENST00000437048 SIGLEC9Q9Y336 463 aa5.83□□□□□ -1.48
VPS53-204ENST00000437048 J3KRW8 73 aa5.83□□□□□ -1.48
VPS53-204ENST00000437048 C8orf86Q6ZUL3 223 aa5.83□□□□□ -1.48
VPS53-204ENST00000437048 GFI1Q99684 422 aa5.83□□□□□ -1.48
VPS53-204ENST00000437048 TRBV19A0A075B6N1 114 aa5.83□□□□□ -1.48
VPS53-204ENST00000437048 THBDP07204 575 aa5.83□□□□□ -1.48
VPS53-204ENST00000437048 COL4A1P02462 1669 aa5.83□□□□□ -1.48
VPS53-204ENST00000437048 PCDH15Q96QU1 1955 aa5.83□□□□□ -1.48
VPS53-204ENST00000437048 AGFG2O95081 481 aa5.83□□□□□ -1.48
VPS53-204ENST00000437048 ZNF747Q9BV97 191 aa5.83□□□□□ -1.48
VPS53-204ENST00000437048 IGHV3-21A0A0B4J1V1 117 aa5.83□□□□□ -1.48
VPS53-204ENST00000437048 SRRM4A7MD48 611 aaKnown RBP5.83□□□□□ -1.48
VPS53-204ENST00000437048 COX6B1P14854 86 aa5.83□□□□□ -1.48
VPS53-204ENST00000437048 NDUFA4L2Q9NRX3 87 aa5.83□□□□□ -1.48
VPS53-204ENST00000437048 IGLC1P0CG04 106 aa5.83□□□□□ -1.48
VPS53-204ENST00000437048 RNASE2P10153 161 aaKnown RBP5.83□□□□□ -1.48
VPS53-204ENST00000437048 GATA2P23769 480 aaPredicted RBP5.82□□□□□ -1.48
VPS53-204ENST00000437048 SRXN1Q9BYN0 137 aa5.82□□□□□ -1.48
VPS53-204ENST00000437048 Q8TCH9 128 aa5.82□□□□□ -1.48
VPS53-204ENST00000437048 PRR25Q96S07 402 aa5.82□□□□□ -1.48
VPS53-204ENST00000437048 FAM240AA0A1B0GVK7 77 aa5.82□□□□□ -1.48
VPS53-204ENST00000437048 FOXI1Q12951 378 aa5.82□□□□□ -1.48
VPS53-204ENST00000437048 CGB1A6NKQ9 187 aa5.82□□□□□ -1.48
VPS53-204ENST00000437048 TIMM17AQ99595 171 aa5.82□□□□□ -1.48
VPS53-204ENST00000437048 A4D1N5 150 aa5.82□□□□□ -1.48
VPS53-204ENST00000437048 LTAP01374 205 aa5.82□□□□□ -1.48
VPS53-204ENST00000437048 RNF138Q8WVD3 245 aa5.82□□□□□ -1.48
VPS53-204ENST00000437048 TP53TG1Q9Y2A0 90 aa5.82□□□□□ -1.48
VPS53-204ENST00000437048 B5MCH6 92 aa5.82□□□□□ -1.48
VPS53-204ENST00000437048 SPACA3Q8IXA5 215 aa5.82□□□□□ -1.48
VPS53-204ENST00000437048 E9PLN8 166 aa5.82□□□□□ -1.48
VPS53-204ENST00000437048 IGHV1-8P0DP01 117 aa5.82□□□□□ -1.48
VPS53-204ENST00000437048 ZNF462Q96JM2 2506 aa5.82□□□□□ -1.48
VPS53-204ENST00000437048 Q6Q795 121 aa5.82□□□□□ -1.48
VPS53-204ENST00000437048 GNG5P63218 68 aa5.82□□□□□ -1.48
VPS53-204ENST00000437048 LINC01619G3V211 115 aa5.81□□□□□ -1.48
VPS53-204ENST00000437048 FOXE3Q13461 319 aa5.81□□□□□ -1.48
VPS53-204ENST00000437048 Q8N1Y9 231 aa5.81□□□□□ -1.48
VPS53-204ENST00000437048 SLC25A29Q8N8R3 303 aa5.81□□□□□ -1.48
VPS53-204ENST00000437048 SDHAF1A6NFY7 115 aa5.81□□□□□ -1.48
VPS53-204ENST00000437048 ATP5J2P56134 94 aa5.81□□□□□ -1.48
VPS53-204ENST00000437048 PEAR1Q5VY43 1037 aaPredicted RBP5.81□□□□□ -1.48
VPS53-204ENST00000437048 DMRTC2Q8IXT2 367 aaPredicted RBP5.81□□□□□ -1.48
VPS53-204ENST00000437048 ZNF106Q9H2Y7 1883 aaKnown RBP5.81□□□□□ -1.48
VPS53-204ENST00000437048 COLCA1Q6ZS62 124 aa5.81□□□□□ -1.48
VPS53-204ENST00000437048 TRAV13-1A0A0B4J241 112 aa5.81□□□□□ -1.48
VPS53-204ENST00000437048 FAM168AQ92567 244 aa5.81□□□□□ -1.48
VPS53-204ENST00000437048 RPP25Q9BUL9 199 aaKnown RBP5.81□□□□□ -1.48
VPS53-204ENST00000437048 CD59P13987 128 aa5.81□□□□□ -1.48
VPS53-204ENST00000437048 NDUFC2-KCTD14E9PQ53 114 aa5.81□□□□□ -1.48
VPS53-204ENST00000437048 CRLF1O75462 422 aa5.81□□□□□ -1.48
VPS53-204ENST00000437048 CLEC19AQ6UXS0 136 aa5.81□□□□□ -1.48
VPS53-204ENST00000437048 RPL15P61313 204 aaKnown RBP5.81□□□□□ -1.48
VPS53-204ENST00000437048 TRAV40A0A0B4J280 105 aa5.81□□□□□ -1.48
VPS53-204ENST00000437048 NCOR2Q9Y618 2525 aa5.8□□□□□ -1.48
VPS53-204ENST00000437048 NKAPP1Q8N9T2 125 aa5.8□□□□□ -1.48
VPS53-204ENST00000437048 CCL19Q99731 98 aa5.8□□□□□ -1.48
VPS53-204ENST00000437048 IGHV1-58A0A0C4DH39 117 aa5.8□□□□□ -1.48
VPS53-204ENST00000437048 TRBV10-2A0A0K0K1G8 114 aa5.8□□□□□ -1.48
VPS53-204ENST00000437048 PSMB8P28062 276 aa5.8□□□□□ -1.48
VPS53-204ENST00000437048 PRR15LQ9BU68 103 aa5.8□□□□□ -1.48
VPS53-204ENST00000437048 C5orf63A6NC05 138 aa5.8□□□□□ -1.48
Retrieved 100 of 20,778 RNA–protein pairs in 53.3 ms