RNA–Protein interactions for RNA: ENST00000401394.5

CTCF-202, Transcript of CCCTC-binding factor, humanhuman

TSL 1 (best) BASIC

Gene CTCF, Length 2,978 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CTCF-202ENST00000401394 GCSHP23434 173 aa16.35■□□□□ 0.21
CTCF-202ENST00000401394 DYNAPQ8N1N2 210 aa16.35■□□□□ 0.21
CTCF-202ENST00000401394 SMAD5-AS1Q9Y6J3 95 aa16.35■□□□□ 0.21
CTCF-202ENST00000401394 PRR25Q96S07 402 aa16.34■□□□□ 0.21
CTCF-202ENST00000401394 MBD3L2BA0A1B0GVZ6 204 aaPredicted RBP16.34■□□□□ 0.21
CTCF-202ENST00000401394 ZNF493Q6ZR52 646 aa16.34■□□□□ 0.21
CTCF-202ENST00000401394 GTSCR1Q86UQ5 136 aa16.34■□□□□ 0.21
CTCF-202ENST00000401394 MTURNQ8N3F0 131 aa16.34■□□□□ 0.21
CTCF-202ENST00000401394 AAMDCQ9H7C9 122 aa16.34■□□□□ 0.21
CTCF-202ENST00000401394 ASCL5Q7RTU5 278 aa16.33■□□□□ 0.21
CTCF-202ENST00000401394 AGRNO00468 2067 aa16.32■□□□□ 0.2
CTCF-202ENST00000401394 LEPP41159 167 aa16.32■□□□□ 0.2
CTCF-202ENST00000401394 DEFB104AQ8WTQ1 72 aa16.32■□□□□ 0.2
CTCF-202ENST00000401394 OR2K2Q8NGT1 345 aa16.32■□□□□ 0.2
CTCF-202ENST00000401394 RNF185Q96GF1 192 aa16.32■□□□□ 0.2
CTCF-202ENST00000401394 PTPRQQ9UMZ3 2332 aa16.31■□□□□ 0.2
CTCF-202ENST00000401394 LY6LH3BQJ8 138 aa16.31■□□□□ 0.2
CTCF-202ENST00000401394 SEC11AP67812 179 aa16.31■□□□□ 0.2
CTCF-202ENST00000401394 LGALS9BQ3B8N2 356 aa16.31■□□□□ 0.2
CTCF-202ENST00000401394 LGALS9CQ6DKI2 356 aa16.31■□□□□ 0.2
CTCF-202ENST00000401394 Q8NA96 180 aa16.31■□□□□ 0.2
CTCF-202ENST00000401394 U3KQK5 164 aa16.31■□□□□ 0.2
CTCF-202ENST00000401394 K7ERU9 68 aa16.31■□□□□ 0.2
CTCF-202ENST00000401394 NBR2O15453 112 aa16.3■□□□□ 0.2
CTCF-202ENST00000401394 SPCS1Q9Y6A9 102 aa16.3■□□□□ 0.2
CTCF-202ENST00000401394 MUC6Q6W4X9 2439 aa16.3■□□□□ 0.2
CTCF-202ENST00000401394 TRGV3P03979 118 aa16.3■□□□□ 0.2
CTCF-202ENST00000401394 PRSS1P07477 247 aa16.3■□□□□ 0.2
CTCF-202ENST00000401394 IGF2-ASQ6U949 168 aa16.3■□□□□ 0.2
CTCF-202ENST00000401394 LCNL1Q6ZST4 164 aa16.3■□□□□ 0.2
CTCF-202ENST00000401394 ARL6IP6Q8N6S5 226 aa16.3■□□□□ 0.2
CTCF-202ENST00000401394 H3BRM9 83 aa16.29■□□□□ 0.2
CTCF-202ENST00000401394 K7EP34 96 aa16.29■□□□□ 0.2
CTCF-202ENST00000401394 GATD1Q8NB37 220 aa16.29■□□□□ 0.2
CTCF-202ENST00000401394 J3KRW8 73 aa16.29■□□□□ 0.2
CTCF-202ENST00000401394 TCF15Q12870 199 aa16.28■□□□□ 0.2
CTCF-202ENST00000401394 IL17RELQ6ZVW7 336 aa16.28■□□□□ 0.2
CTCF-202ENST00000401394 OR1N2Q8NGR9 330 aa16.28■□□□□ 0.2
CTCF-202ENST00000401394 SMIM15Q7Z3B0 74 aa16.28■□□□□ 0.2
CTCF-202ENST00000401394 C11orf21Q9P2W6 132 aa16.28■□□□□ 0.2
CTCF-202ENST00000401394 CDSNQ15517 529 aa16.27■□□□□ 0.2
CTCF-202ENST00000401394 FOXC2Q99958 501 aa16.27■□□□□ 0.2
CTCF-202ENST00000401394 HHLA3Q9XRX5 114 aa16.27■□□□□ 0.2
CTCF-202ENST00000401394 A6NDN8 102 aa16.27■□□□□ 0.19
CTCF-202ENST00000401394 RPL24P83731 157 aaKnown RBP16.27■□□□□ 0.19
CTCF-202ENST00000401394 HSD52Q0P140 79 aa16.27■□□□□ 0.19
CTCF-202ENST00000401394 ZNF562Q6V9R5 426 aa16.27■□□□□ 0.19
CTCF-202ENST00000401394 CFHR4Q92496 578 aa16.27■□□□□ 0.19
CTCF-202ENST00000401394 TRBV6-1A0A0K0K1D8 114 aa16.26■□□□□ 0.19
CTCF-202ENST00000401394 A0A1W2PPM0 123 aa16.26■□□□□ 0.19
CTCF-202ENST00000401394 FAM90A27PA6NNH2 459 aa16.26■□□□□ 0.19
CTCF-202ENST00000401394 C21orf62Q9NYP8 219 aa16.26■□□□□ 0.19
CTCF-202ENST00000401394 ZNF672Q499Z4 452 aaPredicted RBP16.26■□□□□ 0.19
CTCF-202ENST00000401394 TMEM158Q8WZ71 300 aa16.26■□□□□ 0.19
CTCF-202ENST00000401394 TMEM160Q9NX00 188 aa16.26■□□□□ 0.19
CTCF-202ENST00000401394 IGLV11-55A0A075B6I3 123 aa16.26■□□□□ 0.19
CTCF-202ENST00000401394 CTSGP08311 255 aa16.26■□□□□ 0.19
CTCF-202ENST00000401394 MAPKAPK5-AS1Q8N8E1 139 aa16.26■□□□□ 0.19
CTCF-202ENST00000401394 TNFRSF6BO95407 300 aa16.25■□□□□ 0.19
CTCF-202ENST00000401394 ODF1Q14990 250 aa16.25■□□□□ 0.19
CTCF-202ENST00000401394 DEFB1P60022 68 aa16.25■□□□□ 0.19
CTCF-202ENST00000401394 GTF2H5Q6ZYL4 71 aa16.25■□□□□ 0.19
CTCF-202ENST00000401394 NHP2Q9NX24 153 aaKnown RBP16.25■□□□□ 0.19
CTCF-202ENST00000401394 TRAV40A0A0B4J280 105 aa16.24■□□□□ 0.19
CTCF-202ENST00000401394 MFAP4P55083 255 aa16.24■□□□□ 0.19
CTCF-202ENST00000401394 PAX2Q02962 417 aa16.24■□□□□ 0.19
CTCF-202ENST00000401394 LYPD1Q8N2G4 141 aa16.24■□□□□ 0.19
CTCF-202ENST00000401394 IGLC6P0CF74 106 aa16.24■□□□□ 0.19
CTCF-202ENST00000401394 EFNA4P52798 201 aa16.24■□□□□ 0.19
CTCF-202ENST00000401394 C5orf64Q2M2E5 130 aa16.24■□□□□ 0.19
CTCF-202ENST00000401394 KLK15Q9H2R5 256 aa16.24■□□□□ 0.19
CTCF-202ENST00000401394 DPM3Q9P2X0 92 aa16.24■□□□□ 0.19
CTCF-202ENST00000401394 G3V4G9 280 aa16.23■□□□□ 0.19
CTCF-202ENST00000401394 ZC2HC1BQ5TFG8 222 aa16.23■□□□□ 0.19
CTCF-202ENST00000401394 Q6AWC8 147 aa16.23■□□□□ 0.19
CTCF-202ENST00000401394 TNFRSF14Q92956 283 aa16.23■□□□□ 0.19
CTCF-202ENST00000401394 RPS20P60866 119 aaKnown RBP16.23■□□□□ 0.19
CTCF-202ENST00000401394 SAMD5Q5TGI4 173 aa16.23■□□□□ 0.19
CTCF-202ENST00000401394 AMTNQ6UX39 209 aa16.23■□□□□ 0.19
CTCF-202ENST00000401394 NPFFR1Q9GZQ6 430 aa16.23■□□□□ 0.19
CTCF-202ENST00000401394 TEX48A0A1B0GUV7 120 aa16.23■□□□□ 0.19
CTCF-202ENST00000401394 A0A1B0GW15 77 aa16.23■□□□□ 0.19
CTCF-202ENST00000401394 LINC01548A6NM66 108 aa16.23■□□□□ 0.19
CTCF-202ENST00000401394 DTX2Q86UW9 622 aa16.23■□□□□ 0.19
CTCF-202ENST00000401394 PSMG3-AS1Q96PY0 264 aa16.23■□□□□ 0.19
CTCF-202ENST00000401394 TMEM8BA6NDV4 472 aa16.22■□□□□ 0.19
CTCF-202ENST00000401394 TMEM238C9JI98 176 aa16.22■□□□□ 0.19
CTCF-202ENST00000401394 ARPC1AQ92747 370 aa16.22■□□□□ 0.19
CTCF-202ENST00000401394 JKAMPQ9P055 326 aa16.22■□□□□ 0.19
CTCF-202ENST00000401394 IGKV3D-20A0A0C4DH25 116 aa16.21■□□□□ 0.19
CTCF-202ENST00000401394 VSTM5A8MXK1 200 aa16.21■□□□□ 0.19
CTCF-202ENST00000401394 IGF1P05019 195 aa16.21■□□□□ 0.19
CTCF-202ENST00000401394 CHAC1Q9BUX1 264 aa16.21■□□□□ 0.19
CTCF-202ENST00000401394 UFC1Q9Y3C8 167 aa16.21■□□□□ 0.19
CTCF-202ENST00000401394 TRBV25-1A0A075B6N4 114 aa16.21■□□□□ 0.19
CTCF-202ENST00000401394 CD3EP07766 207 aa16.21■□□□□ 0.19
CTCF-202ENST00000401394 MRPL35Q9NZE8 188 aaKnown RBP16.21■□□□□ 0.19
CTCF-202ENST00000401394 ECSCRQ19T08 205 aa16.2■□□□□ 0.18
CTCF-202ENST00000401394 MAP1LC3AQ9H492 121 aa16.2■□□□□ 0.18
CTCF-202ENST00000401394 OR9G4Q8NGQ1 327 aa16.2■□□□□ 0.18
Retrieved 100 of 20,778 RNA–protein pairs in 31.4 ms