RNA–Protein interactions for RNA: ENST00000395684.5

SHMT1-205, Transcript of serine hydroxymethyltransferase 1, humanhuman

TSL 1 (best)

Gene SHMT1, Length 2,652 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT1-205ENST00000395684 PRSS57Q6UWY2 283 aa9.87□□□□□ -0.83
SHMT1-205ENST00000395684 RNF185Q96GF1 192 aa9.87□□□□□ -0.83
SHMT1-205ENST00000395684 SPOCK3Q9BQ16 436 aa9.87□□□□□ -0.83
SHMT1-205ENST00000395684 DKK2Q9UBU2 259 aa9.87□□□□□ -0.83
SHMT1-205ENST00000395684 SMAD7O15105 426 aaKnown RBP9.86□□□□□ -0.83
SHMT1-205ENST00000395684 BMI1P35226 326 aa9.86□□□□□ -0.83
SHMT1-205ENST00000395684 PCP2Q8IVA1 136 aa9.86□□□□□ -0.83
SHMT1-205ENST00000395684 M0R1W7 72 aa9.86□□□□□ -0.83
SHMT1-205ENST00000395684 ORM1P02763 201 aa9.86□□□□□ -0.83
SHMT1-205ENST00000395684 PPBPP02775 128 aa9.86□□□□□ -0.83
SHMT1-205ENST00000395684 ADAMTSL5Q6ZMM2 481 aa9.86□□□□□ -0.83
SHMT1-205ENST00000395684 PRAC2D3DTV9 90 aa9.85□□□□□ -0.83
SHMT1-205ENST00000395684 ERCC8Q13216 396 aa9.85□□□□□ -0.83
SHMT1-205ENST00000395684 Q8N6K4 173 aa9.85□□□□□ -0.83
SHMT1-205ENST00000395684 C18orf15Q96N68 181 aa9.85□□□□□ -0.83
SHMT1-205ENST00000395684 WNK2Q9Y3S1 2297 aa9.85□□□□□ -0.83
SHMT1-205ENST00000395684 A1L4Q6 167 aa9.85□□□□□ -0.83
SHMT1-205ENST00000395684 NBL1P41271 181 aa9.85□□□□□ -0.83
SHMT1-205ENST00000395684 CDSNQ15517 529 aa9.85□□□□□ -0.83
SHMT1-205ENST00000395684 SELENOKQ9Y6D0 94 aa9.85□□□□□ -0.83
SHMT1-205ENST00000395684 ASH1LQ9NR48 2969 aaKnown RBP9.84□□□□□ -0.83
SHMT1-205ENST00000395684 NMUP48645 174 aa9.84□□□□□ -0.83
SHMT1-205ENST00000395684 VMO1Q7Z5L0 202 aa9.84□□□□□ -0.83
SHMT1-205ENST00000395684 JMJD8Q96S16 334 aa9.84□□□□□ -0.83
SHMT1-205ENST00000395684 NAA38Q9BRA0 125 aaKnown RBP9.84□□□□□ -0.83
SHMT1-205ENST00000395684 CNFNQ9BYD5 112 aa9.84□□□□□ -0.83
SHMT1-205ENST00000395684 IGHV7-81A0A0B4J1V7 117 aa9.84□□□□□ -0.83
SHMT1-205ENST00000395684 GAGE10A6NGK3 116 aa9.84□□□□□ -0.83
SHMT1-205ENST00000395684 FBLL1A6NHQ2 334 aaKnown RBP9.84□□□□□ -0.83
SHMT1-205ENST00000395684 H3BRM9 83 aa9.84□□□□□ -0.83
SHMT1-205ENST00000395684 PPIFP30405 207 aaKnown RBP9.84□□□□□ -0.83
SHMT1-205ENST00000395684 OR9G4Q8NGQ1 327 aa9.84□□□□□ -0.83
SHMT1-205ENST00000395684 HRNRQ86YZ3 2850 aaPredicted RBP9.84□□□□□ -0.83
SHMT1-205ENST00000395684 C9orf118A6NHY6 69 aa9.83□□□□□ -0.84
SHMT1-205ENST00000395684 FABP5P3A8MUU1 101 aa9.83□□□□□ -0.84
SHMT1-205ENST00000395684 KIR3DS1Q14943 382 aa9.83□□□□□ -0.84
SHMT1-205ENST00000395684 UFSP1Q6NVU6 142 aa9.83□□□□□ -0.84
SHMT1-205ENST00000395684 TIMD4Q96H15 378 aa9.83□□□□□ -0.84
SHMT1-205ENST00000395684 A6NDN8 102 aa9.83□□□□□ -0.84
SHMT1-205ENST00000395684 H3BUT2 72 aa9.83□□□□□ -0.84
SHMT1-205ENST00000395684 SIVA1O15304 175 aa9.83□□□□□ -0.84
SHMT1-205ENST00000395684 GATA1P15976 413 aaPredicted RBP9.83□□□□□ -0.84
SHMT1-205ENST00000395684 HSD52Q0P140 79 aa9.83□□□□□ -0.84
SHMT1-205ENST00000395684 RNF182Q8N6D2 247 aa9.83□□□□□ -0.84
SHMT1-205ENST00000395684 NPFFR1Q9GZQ6 430 aa9.83□□□□□ -0.84
SHMT1-205ENST00000395684 MAP1LC3AQ9H492 121 aa9.83□□□□□ -0.84
SHMT1-205ENST00000395684 EVI2AP22794 236 aa9.82□□□□□ -0.84
SHMT1-205ENST00000395684 LEPP41159 167 aa9.82□□□□□ -0.84
SHMT1-205ENST00000395684 SRSF2Q01130 221 aaKnown RBP9.82□□□□□ -0.84
SHMT1-205ENST00000395684 EBI3Q14213 229 aa9.82□□□□□ -0.84
SHMT1-205ENST00000395684 CCDC144NLQ6NUI1 221 aa9.82□□□□□ -0.84
SHMT1-205ENST00000395684 VPS25Q9BRG1 176 aa9.82□□□□□ -0.84
SHMT1-205ENST00000395684 LINC01546A6NGU7 62 aa9.82□□□□□ -0.84
SHMT1-205ENST00000395684 TNFRSF6BO95407 300 aa9.82□□□□□ -0.84
SHMT1-205ENST00000395684 TMEM11P17152 192 aa9.82□□□□□ -0.84
SHMT1-205ENST00000395684 FBXL19-AS1Q494R0 122 aa9.82□□□□□ -0.84
SHMT1-205ENST00000395684 MSRB2Q9Y3D2 182 aa9.82□□□□□ -0.84
SHMT1-205ENST00000395684 IL17RELQ6ZVW7 336 aa9.81□□□□□ -0.84
SHMT1-205ENST00000395684 HHLA3Q9XRX5 114 aa9.81□□□□□ -0.84
SHMT1-205ENST00000395684 MED13LQ71F56 2210 aa9.81□□□□□ -0.84
SHMT1-205ENST00000395684 IGKV2D-26A0A0A0MRZ7 120 aa9.81□□□□□ -0.84
SHMT1-205ENST00000395684 IGHV3-66A0A0C4DH42 116 aa9.81□□□□□ -0.84
SHMT1-205ENST00000395684 BUB3O43684 328 aa9.81□□□□□ -0.84
SHMT1-205ENST00000395684 ZFP36P26651 326 aaKnown RBP9.81□□□□□ -0.84
SHMT1-205ENST00000395684 COTL1Q14019 142 aa9.81□□□□□ -0.84
SHMT1-205ENST00000395684 C15orf32Q32M92 178 aa9.81□□□□□ -0.84
SHMT1-205ENST00000395684 LINC01559Q495D7 138 aa9.81□□□□□ -0.84
SHMT1-205ENST00000395684 Q8N9W7 124 aa9.81□□□□□ -0.84
SHMT1-205ENST00000395684 OR4X2Q8NGF9 303 aa9.81□□□□□ -0.84
SHMT1-205ENST00000395684 RAB37Q96AX2 223 aa9.81□□□□□ -0.84
SHMT1-205ENST00000395684 ZFAND3Q9H8U3 227 aa9.81□□□□□ -0.84
SHMT1-205ENST00000395684 SPTA1P02549 2419 aa9.81□□□□□ -0.84
SHMT1-205ENST00000395684 IGKV3D-20A0A0C4DH25 116 aa9.8□□□□□ -0.84
SHMT1-205ENST00000395684 A0A0G2JLM5 398 aa9.8□□□□□ -0.84
SHMT1-205ENST00000395684 CLEC3BP05452 202 aa9.8□□□□□ -0.84
SHMT1-205ENST00000395684 FCER1GP30273 86 aa9.8□□□□□ -0.84
SHMT1-205ENST00000395684 ODF1Q14990 250 aa9.8□□□□□ -0.84
SHMT1-205ENST00000395684 AP1S3Q96PC3 154 aa9.8□□□□□ -0.84
SHMT1-205ENST00000395684 TTTY13Q9BZ97 58 aa9.8□□□□□ -0.84
SHMT1-205ENST00000395684 ZMAT4Q9H898 229 aa9.8□□□□□ -0.84
SHMT1-205ENST00000395684 C11orf21Q9P2W6 132 aa9.8□□□□□ -0.84
SHMT1-205ENST00000395684 K7ENP7 123 aa9.8□□□□□ -0.84
SHMT1-205ENST00000395684 SAP30O75446 220 aa9.8□□□□□ -0.84
SHMT1-205ENST00000395684 SCGB2A1O75556 95 aa9.8□□□□□ -0.84
SHMT1-205ENST00000395684 UNQ5830/PRO19650/PRO19816Q6UY13 95 aa9.8□□□□□ -0.84
SHMT1-205ENST00000395684 DTX2Q86UW9 622 aa9.8□□□□□ -0.84
SHMT1-205ENST00000395684 ZNF502Q8TBZ5 544 aa9.8□□□□□ -0.84
SHMT1-205ENST00000395684 CACNA1BQ00975 2339 aa9.8□□□□□ -0.84
SHMT1-205ENST00000395684 NBASA2RRP1 2371 aa9.8□□□□□ -0.84
SHMT1-205ENST00000395684 IGHV3OR16-13A0A075B7E8 117 aa9.79□□□□□ -0.84
SHMT1-205ENST00000395684 IGHV3-74A0A0B4J1X5 117 aa9.79□□□□□ -0.84
SHMT1-205ENST00000395684 C11orf71Q6IPW1 123 aa9.79□□□□□ -0.84
SHMT1-205ENST00000395684 C1orf122Q6ZSJ8 110 aa9.79□□□□□ -0.84
SHMT1-205ENST00000395684 GTF2H5Q6ZYL4 71 aa9.79□□□□□ -0.84
SHMT1-205ENST00000395684 PTPRQQ9UMZ3 2332 aa9.79□□□□□ -0.84
SHMT1-205ENST00000395684 CLPSL1A2RUU4 121 aa9.79□□□□□ -0.84
SHMT1-205ENST00000395684 CCL21O00585 134 aa9.79□□□□□ -0.84
SHMT1-205ENST00000395684 TM4SF20Q53R12 229 aa9.79□□□□□ -0.84
SHMT1-205ENST00000395684 PIFOQ8TCI5 191 aa9.79□□□□□ -0.84
SHMT1-205ENST00000395684 AGPAT4-IT1Q9H0P7 198 aa9.79□□□□□ -0.84
Retrieved 100 of 20,778 RNA–protein pairs in 26.7 ms