RNA–Protein interactions for RNA: ENST00000380075.6

TRIM54-202, Transcript of tripartite motif containing 54, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene TRIM54, Length 1,967 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM54-202ENST00000380075 TMEM219Q86XT9 240 aa16.64■□□□□ 0.25
TRIM54-202ENST00000380075 C8orf49Q96NF6 230 aa16.64■□□□□ 0.25
TRIM54-202ENST00000380075 C20orf144Q9BQM9 153 aa16.64■□□□□ 0.25
TRIM54-202ENST00000380075 LOC102724200A0A096LPH7 203 aaPredicted RBP16.64■□□□□ 0.25
TRIM54-202ENST00000380075 BRI3O95415 125 aa16.64■□□□□ 0.25
TRIM54-202ENST00000380075 PRR25Q96S07 402 aa16.64■□□□□ 0.25
TRIM54-202ENST00000380075 IGHV3OR16-10A0A075B7F0 116 aa16.63■□□□□ 0.25
TRIM54-202ENST00000380075 BRD3OSQ6XYD6 125 aa16.63■□□□□ 0.25
TRIM54-202ENST00000380075 CHCHD1Q96BP2 118 aaKnown RBP16.63■□□□□ 0.25
TRIM54-202ENST00000380075 METTL26Q96S19 204 aa16.63■□□□□ 0.25
TRIM54-202ENST00000380075 F8P00451 2351 aa16.63■□□□□ 0.25
TRIM54-202ENST00000380075 IGKV2-40A0A087WW87 121 aaPredicted RBP16.62■□□□□ 0.25
TRIM54-202ENST00000380075 RBM14-RBM4A0A0A0MSL8 147 aaKnown RBP16.62■□□□□ 0.25
TRIM54-202ENST00000380075 M0QZK8 103 aa16.62■□□□□ 0.25
TRIM54-202ENST00000380075 IGKV2D-40P01614 121 aaPredicted RBP16.62■□□□□ 0.25
TRIM54-202ENST00000380075 IGF1P05019 195 aa16.62■□□□□ 0.25
TRIM54-202ENST00000380075 RAB4AP20338 218 aa16.62■□□□□ 0.25
TRIM54-202ENST00000380075 BMI1P35226 326 aa16.62■□□□□ 0.25
TRIM54-202ENST00000380075 VAMP8Q9BV40 100 aa16.62■□□□□ 0.25
TRIM54-202ENST00000380075 HIF1ANQ9NWT6 349 aa16.62■□□□□ 0.25
TRIM54-202ENST00000380075 IGHV3-35A0A0C4DH35 117 aa16.62■□□□□ 0.25
TRIM54-202ENST00000380075 CLPSL1A2RUU4 121 aa16.62■□□□□ 0.25
TRIM54-202ENST00000380075 RBAKDNA6NC62 111 aa16.62■□□□□ 0.25
TRIM54-202ENST00000380075 LY6G6DO95868 133 aa16.62■□□□□ 0.25
TRIM54-202ENST00000380075 NTF3P20783 257 aa16.62■□□□□ 0.25
TRIM54-202ENST00000380075 RPS20P60866 119 aaKnown RBP16.62■□□□□ 0.25
TRIM54-202ENST00000380075 RNASEKQ6P5S7 137 aaKnown RBP16.62■□□□□ 0.25
TRIM54-202ENST00000380075 TMEM189A5PLL7 270 aa16.61■□□□□ 0.25
TRIM54-202ENST00000380075 H3BUA1 57 aa16.61■□□□□ 0.25
TRIM54-202ENST00000380075 SH2D1AO60880 128 aa16.61■□□□□ 0.25
TRIM54-202ENST00000380075 IGHG4P01861 327 aa16.61■□□□□ 0.25
TRIM54-202ENST00000380075 SRSF2Q01130 221 aaKnown RBP16.61■□□□□ 0.25
TRIM54-202ENST00000380075 LCN12Q6JVE5 192 aa16.61■□□□□ 0.25
TRIM54-202ENST00000380075 FAM19A2Q8N3H0 131 aa16.61■□□□□ 0.25
TRIM54-202ENST00000380075 Q8N976 141 aa16.61■□□□□ 0.25
TRIM54-202ENST00000380075 RNF114Q9Y508 228 aa16.61■□□□□ 0.25
TRIM54-202ENST00000380075 TLN2Q9Y4G6 2542 aa16.61■□□□□ 0.25
TRIM54-202ENST00000380075 CD5LO43866 347 aa16.6■□□□□ 0.25
TRIM54-202ENST00000380075 C3orf79P0CE67 100 aa16.6■□□□□ 0.25
TRIM54-202ENST00000380075 U3KQE9 123 aa16.6■□□□□ 0.25
TRIM54-202ENST00000380075 M0R2Z0 102 aa16.6■□□□□ 0.25
TRIM54-202ENST00000380075 ARMS2P0C7Q2 107 aa16.6■□□□□ 0.25
TRIM54-202ENST00000380075 IGHV4-38-2P0DP08 117 aa16.6■□□□□ 0.25
TRIM54-202ENST00000380075 GATA3P23771 443 aa16.6■□□□□ 0.25
TRIM54-202ENST00000380075 UNQ5830/PRO19650/PRO19816Q6UY13 95 aa16.6■□□□□ 0.25
TRIM54-202ENST00000380075 MRPL53Q96EL3 112 aaKnown RBP16.6■□□□□ 0.25
TRIM54-202ENST00000380075 A6NDX4 124 aa16.59■□□□□ 0.25
TRIM54-202ENST00000380075 ASCL2Q99929 193 aa16.59■□□□□ 0.25
TRIM54-202ENST00000380075 IGHV3OR16-8A0A075B7F1 116 aa16.58■□□□□ 0.25
TRIM54-202ENST00000380075 CLEC5AQ9NY25 188 aa16.58■□□□□ 0.25
TRIM54-202ENST00000380075 PRPF8Q6P2Q9 2335 aaKnown RBP eCLIP16.58■□□□□ 0.25
TRIM54-202ENST00000380075 IGHG2P01859 326 aa16.58■□□□□ 0.24
TRIM54-202ENST00000380075 TRGV3P03979 118 aa16.58■□□□□ 0.24
TRIM54-202ENST00000380075 ZNF493Q6ZR52 646 aa16.58■□□□□ 0.24
TRIM54-202ENST00000380075 FAM181BA6NEQ2 426 aa16.57■□□□□ 0.24
TRIM54-202ENST00000380075 URB1-AS1Q96HZ7 61 aa16.57■□□□□ 0.24
TRIM54-202ENST00000380075 VGLL1Q99990 258 aa16.57■□□□□ 0.24
TRIM54-202ENST00000380075 USMG5Q96IX5 58 aa16.57■□□□□ 0.24
TRIM54-202ENST00000380075 YAE1D1Q9NRH1 226 aa16.57■□□□□ 0.24
TRIM54-202ENST00000380075 ANK3Q12955 4377 aaKnown RBP16.56■□□□□ 0.24
TRIM54-202ENST00000380075 PMCHL1Q16048 86 aa16.56■□□□□ 0.24
TRIM54-202ENST00000380075 MRPL52Q86TS9 123 aaKnown RBP16.56■□□□□ 0.24
TRIM54-202ENST00000380075 C2orf88Q9BSF0 95 aa16.56■□□□□ 0.24
TRIM54-202ENST00000380075 H3BUX3 64 aa16.55■□□□□ 0.24
TRIM54-202ENST00000380075 LINC00614P0C842 121 aa16.55■□□□□ 0.24
TRIM54-202ENST00000380075 HLA-DMBP28068 263 aa16.55■□□□□ 0.24
TRIM54-202ENST00000380075 MIEN1Q9BRT3 115 aa16.55■□□□□ 0.24
TRIM54-202ENST00000380075 PAM16Q9Y3D7 125 aa16.55■□□□□ 0.24
TRIM54-202ENST00000380075 BTF3P20290 206 aaKnown RBP16.55■□□□□ 0.24
TRIM54-202ENST00000380075 ARL3P36405 182 aa16.54■□□□□ 0.24
TRIM54-202ENST00000380075 TDRG1Q3Y452 100 aa16.54■□□□□ 0.24
TRIM54-202ENST00000380075 IGFL4Q6B9Z1 124 aa16.54■□□□□ 0.24
TRIM54-202ENST00000380075 LYZL1Q6UWQ5 148 aa16.54■□□□□ 0.24
TRIM54-202ENST00000380075 Q8TAT8 98 aa16.54■□□□□ 0.24
TRIM54-202ENST00000380075 FABP5P3A8MUU1 101 aa16.53■□□□□ 0.24
TRIM54-202ENST00000380075 AVPP01185 164 aa16.53■□□□□ 0.24
TRIM54-202ENST00000380075 OR5AL1P0C617 328 aa16.53■□□□□ 0.24
TRIM54-202ENST00000380075 PRB4P10163 310 aaPredicted RBP16.53■□□□□ 0.24
TRIM54-202ENST00000380075 PPIFP30405 207 aaKnown RBP16.53■□□□□ 0.24
TRIM54-202ENST00000380075 CTRLP40313 264 aa16.53■□□□□ 0.24
TRIM54-202ENST00000380075 TPPP3Q9BW30 176 aa16.53■□□□□ 0.24
TRIM54-202ENST00000380075 NDUFA4O00483 81 aa16.53■□□□□ 0.24
TRIM54-202ENST00000380075 LY6EQ16553 131 aa16.52■□□□□ 0.24
TRIM54-202ENST00000380075 LINC00527Q9UJ94 153 aa16.52■□□□□ 0.24
TRIM54-202ENST00000380075 ZNF580Q9UK33 172 aa16.52■□□□□ 0.24
TRIM54-202ENST00000380075 C2orf70A6NJV1 201 aa16.51■□□□□ 0.23
TRIM54-202ENST00000380075 FER1L6-AS1Q8NA97 138 aa16.51■□□□□ 0.23
TRIM54-202ENST00000380075 TEP1Q99973 2627 aaKnown RBP16.51■□□□□ 0.23
TRIM54-202ENST00000380075 IGHV3-66A0A0C4DH42 116 aa16.51■□□□□ 0.23
TRIM54-202ENST00000380075 IGLC6P0CF74 106 aa16.51■□□□□ 0.23
TRIM54-202ENST00000380075 ZNF80P51504 273 aaPredicted RBP16.51■□□□□ 0.23
TRIM54-202ENST00000380075 EBLN2Q6P2I7 272 aa16.51■□□□□ 0.23
TRIM54-202ENST00000380075 C8orf86Q6ZUL3 223 aa16.51■□□□□ 0.23
TRIM54-202ENST00000380075 PPP1R14DQ9NXH3 145 aa16.51■□□□□ 0.23
TRIM54-202ENST00000380075 TMSB15BA0A087X1C1 80 aa16.5■□□□□ 0.23
TRIM54-202ENST00000380075 TRAV8-2A0A0B4J237 113 aa16.5■□□□□ 0.23
TRIM54-202ENST00000380075 IGHV1-24A0A0C4DH33 117 aa16.5■□□□□ 0.23
TRIM54-202ENST00000380075 PRR31Q5SQ13 230 aa16.5■□□□□ 0.23
TRIM54-202ENST00000380075 GLMPQ8WWB7 406 aa16.5■□□□□ 0.23
TRIM54-202ENST00000380075 SONP18583 2426 aaKnown RBP16.5■□□□□ 0.23
Retrieved 100 of 20,778 RNA–protein pairs in 90 ms