RNA–Protein interactions for RNA: ENST00000377819.9

RTN3-206, Transcript of reticulon 3, humanhuman

TSL 1 (best) BASIC

Gene RTN3, Length 4,937 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RTN3-206ENST00000377819 PTPN13Q12923 2485 aa8.62□□□□□ -1.03
RTN3-206ENST00000377819 RNF223E7ERA6 249 aa8.62□□□□□ -1.03
RTN3-206ENST00000377819 NDUFB8O95169 186 aa8.62□□□□□ -1.03
RTN3-206ENST00000377819 TIAF1O95411 115 aa8.62□□□□□ -1.03
RTN3-206ENST00000377819 IGKV1-39P01597 117 aa8.62□□□□□ -1.03
RTN3-206ENST00000377819 IGKV1D-39P04432 117 aa8.62□□□□□ -1.03
RTN3-206ENST00000377819 MESP1Q9BRJ9 268 aa8.62□□□□□ -1.03
RTN3-206ENST00000377819 DYSFO75923 2080 aa8.62□□□□□ -1.03
RTN3-206ENST00000377819 ZNF462Q96JM2 2506 aa8.62□□□□□ -1.03
RTN3-206ENST00000377819 IGKV4-1P06312 121 aa8.62□□□□□ -1.03
RTN3-206ENST00000377819 MSMBP08118 114 aa8.62□□□□□ -1.03
RTN3-206ENST00000377819 IGFL4Q6B9Z1 124 aa8.62□□□□□ -1.03
RTN3-206ENST00000377819 FN1P02751 2386 aaKnown RBP8.61□□□□□ -1.03
RTN3-206ENST00000377819 TMEM178BH3BS89 294 aa8.61□□□□□ -1.03
RTN3-206ENST00000377819 HLA-DMBP28068 263 aa8.61□□□□□ -1.03
RTN3-206ENST00000377819 TMEM200BQ69YZ2 307 aa8.61□□□□□ -1.03
RTN3-206ENST00000377819 C15orf53Q8NAA6 179 aa8.61□□□□□ -1.03
RTN3-206ENST00000377819 UTRNP46939 3433 aa8.61□□□□□ -1.03
RTN3-206ENST00000377819 IGHV1-18A0A0C4DH31 117 aa8.61□□□□□ -1.03
RTN3-206ENST00000377819 IGHV3-38A0A0C4DH36 116 aa8.61□□□□□ -1.03
RTN3-206ENST00000377819 SMIM10L1P0DMW3 83 aa8.61□□□□□ -1.03
RTN3-206ENST00000377819 GNLYP22749 145 aa8.61□□□□□ -1.03
RTN3-206ENST00000377819 SAA4P35542 130 aa8.61□□□□□ -1.03
RTN3-206ENST00000377819 XCL1P47992 114 aa8.61□□□□□ -1.03
RTN3-206ENST00000377819 SRSF2Q01130 221 aaKnown RBP8.61□□□□□ -1.03
RTN3-206ENST00000377819 HIST3H2BBQ8N257 126 aa8.61□□□□□ -1.03
RTN3-206ENST00000377819 SMIM10Q96HG1 83 aa8.61□□□□□ -1.03
RTN3-206ENST00000377819 ACYP1P07311 99 aa8.61□□□□□ -1.03
RTN3-206ENST00000377819 BAALC-AS2P0C853 105 aa8.61□□□□□ -1.03
RTN3-206ENST00000377819 CFPP27918 469 aa8.61□□□□□ -1.03
RTN3-206ENST00000377819 EIF4EBP2Q13542 120 aaPredicted RBP8.61□□□□□ -1.03
RTN3-206ENST00000377819 C18orf12Q96KH6 178 aa8.61□□□□□ -1.03
RTN3-206ENST00000377819 H0YGX0 51 aa8.61□□□□□ -1.03
RTN3-206ENST00000377819 PSMB8P28062 276 aa8.61□□□□□ -1.03
RTN3-206ENST00000377819 UBE2E1P51965 193 aa8.61□□□□□ -1.03
RTN3-206ENST00000377819 IGHV4-4A0A075B6R2 117 aa8.6□□□□□ -1.03
RTN3-206ENST00000377819 A0A1B0GTI1 187 aa8.6□□□□□ -1.03
RTN3-206ENST00000377819 BPESC1Q9GZL8 116 aa8.6□□□□□ -1.03
RTN3-206ENST00000377819 TRAV4A0A0B4J268 109 aa8.6□□□□□ -1.03
RTN3-206ENST00000377819 CLPSL2Q6UWE3 100 aa8.6□□□□□ -1.03
RTN3-206ENST00000377819 SH2D6Q7Z4S9 175 aa8.6□□□□□ -1.03
RTN3-206ENST00000377819 MGAMO43451 1857 aa8.6□□□□□ -1.03
RTN3-206ENST00000377819 TRAV1-1A0A0B4J248 108 aa8.6□□□□□ -1.03
RTN3-206ENST00000377819 H0Y9J4 135 aa8.6□□□□□ -1.03
RTN3-206ENST00000377819 NTN5Q8WTR8 489 aaPredicted RBP8.6□□□□□ -1.03
RTN3-206ENST00000377819 TEX22C9J3V5 150 aa8.59□□□□□ -1.03
RTN3-206ENST00000377819 HOXB4P17483 251 aaPredicted RBP8.59□□□□□ -1.03
RTN3-206ENST00000377819 MRPL23Q16540 153 aaKnown RBP8.59□□□□□ -1.03
RTN3-206ENST00000377819 CR1LQ2VPA4 569 aa8.59□□□□□ -1.03
RTN3-206ENST00000377819 Q8N8P6 123 aa8.59□□□□□ -1.03
RTN3-206ENST00000377819 FAM231BA6NCW3 169 aa8.59□□□□□ -1.03
RTN3-206ENST00000377819 BUB1B-PAK6H3BSN5 160 aa8.59□□□□□ -1.03
RTN3-206ENST00000377819 J3QQQ9 107 aa8.59□□□□□ -1.03
RTN3-206ENST00000377819 MRPL36Q9P0J6 103 aaKnown RBP8.59□□□□□ -1.03
RTN3-206ENST00000377819 KLK9Q9UKQ9 250 aa8.59□□□□□ -1.03
RTN3-206ENST00000377819 C2CD3Q4AC94 2353 aa8.59□□□□□ -1.03
RTN3-206ENST00000377819 ANK1P16157 1881 aa8.59□□□□□ -1.03
RTN3-206ENST00000377819 PDCD11Q14690 1871 aaKnown RBP8.59□□□□□ -1.03
RTN3-206ENST00000377819 HIGD2BQ4VC39 106 aa8.59□□□□□ -1.03
RTN3-206ENST00000377819 SP5Q6BEB4 398 aaPredicted RBP8.59□□□□□ -1.03
RTN3-206ENST00000377819 KIR2DL5BQ8NHK3 375 aa8.59□□□□□ -1.03
RTN3-206ENST00000377819 ZNF837Q96EG3 531 aaPredicted RBP8.59□□□□□ -1.03
RTN3-206ENST00000377819 FREM3P0C091 2139 aa8.59□□□□□ -1.03
RTN3-206ENST00000377819 C9JQL5 133 aa8.59□□□□□ -1.03
RTN3-206ENST00000377819 GFRA4Q9GZZ7 299 aa8.59□□□□□ -1.03
RTN3-206ENST00000377819 KIR2DL5BA0A0G2JN68 375 aa8.58□□□□□ -1.04
RTN3-206ENST00000377819 KIR2DL5BA0A0G2JPC4 375 aa8.58□□□□□ -1.04
RTN3-206ENST00000377819 TAX1BP3O14907 124 aa8.58□□□□□ -1.04
RTN3-206ENST00000377819 KIR2DL5AQ8N109 375 aa8.58□□□□□ -1.04
RTN3-206ENST00000377819 SHANK2-AS3Q9BTD1 123 aa8.58□□□□□ -1.04
RTN3-206ENST00000377819 USP17L23D6RBM5 183 aa8.58□□□□□ -1.04
RTN3-206ENST00000377819 SMIM20Q8N5G0 67 aa8.58□□□□□ -1.04
RTN3-206ENST00000377819 PRR15LQ9BU68 103 aa8.58□□□□□ -1.04
RTN3-206ENST00000377819 TRAV12-2A0A075B6T6 113 aa8.58□□□□□ -1.04
RTN3-206ENST00000377819 A0A0J9YY99 117 aa8.58□□□□□ -1.04
RTN3-206ENST00000377819 HERV-K104P63124 156 aa8.58□□□□□ -1.04
RTN3-206ENST00000377819 MPDZO75970 2070 aa8.58□□□□□ -1.04
RTN3-206ENST00000377819 LRRK1Q38SD2 2015 aa8.58□□□□□ -1.04
RTN3-206ENST00000377819 F8VRH5 84 aa8.57□□□□□ -1.04
RTN3-206ENST00000377819 ATOX1O00244 68 aa8.57□□□□□ -1.04
RTN3-206ENST00000377819 SLC25A29Q8N8R3 303 aa8.57□□□□□ -1.04
RTN3-206ENST00000377819 RNF126Q9BV68 326 aa8.57□□□□□ -1.04
RTN3-206ENST00000377819 POLR2AP24928 1970 aaKnown RBP8.57□□□□□ -1.04
RTN3-206ENST00000377819 ETV2O00321 342 aaPredicted RBP8.57□□□□□ -1.04
RTN3-206ENST00000377819 NDUFA4O00483 81 aa8.57□□□□□ -1.04
RTN3-206ENST00000377819 ATRAIDQ6UW56 229 aa8.57□□□□□ -1.04
RTN3-206ENST00000377819 C9orf47Q6ZRZ4 202 aa8.57□□□□□ -1.04
RTN3-206ENST00000377819 Q86TA4 180 aa8.57□□□□□ -1.04
RTN3-206ENST00000377819 SHROOM3Q8TF72 1996 aa8.57□□□□□ -1.04
RTN3-206ENST00000377819 KLK5Q9Y337 293 aaPredicted RBP8.57□□□□□ -1.04
RTN3-206ENST00000377819 PRR14LQ5THK1 2151 aa8.57□□□□□ -1.04
RTN3-206ENST00000377819 IGKV1D-43A0A0B4J1Z2 117 aa8.57□□□□□ -1.04
RTN3-206ENST00000377819 ZFP36L1Q07352 338 aaKnown RBP8.57□□□□□ -1.04
RTN3-206ENST00000377819 LAIR2Q6ISS4 152 aa8.57□□□□□ -1.04
RTN3-206ENST00000377819 UNQ6494/PRO21346Q6UXR6 183 aa8.57□□□□□ -1.04
RTN3-206ENST00000377819 PIFOQ8TCI5 191 aa8.57□□□□□ -1.04
RTN3-206ENST00000377819 H0YJW9 148 aa8.56□□□□□ -1.04
RTN3-206ENST00000377819 ANKRD39Q53RE8 183 aa8.56□□□□□ -1.04
RTN3-206ENST00000377819 HIST2H2BCQ6DN03 193 aa8.56□□□□□ -1.04
RTN3-206ENST00000377819 BRK1Q8WUW1 75 aa8.56□□□□□ -1.04
Retrieved 100 of 20,778 RNA–protein pairs in 51.3 ms