RNA–Protein interactions for RNA: ENST00000376646.3

VPS13A-206, Transcript of vacuolar protein sorting 13 homolog A, humanhuman

TSL 5 BASIC

Gene VPS13A, Length 2,262 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13A-206ENST00000376646 TRAV27A0A087WT01 109 aa0.48□□□□□ -2.33
VPS13A-206ENST00000376646 MAP1LC3B2A6NCE7 125 aa0.48□□□□□ -2.33
VPS13A-206ENST00000376646 PPP5D1E7EU14 171 aa0.48□□□□□ -2.33
VPS13A-206ENST00000376646 GPR31O00270 319 aa0.48□□□□□ -2.33
VPS13A-206ENST00000376646 RPL35P42766 123 aaKnown RBP0.48□□□□□ -2.33
VPS13A-206ENST00000376646 PHF5AQ7RTV0 110 aaKnown RBP0.48□□□□□ -2.33
VPS13A-206ENST00000376646 ANGPTL5Q86XS5 388 aa0.48□□□□□ -2.33
VPS13A-206ENST00000376646 PLPP5Q8NEB5 264 aa0.48□□□□□ -2.33
VPS13A-206ENST00000376646 PCBD2Q9H0N5 130 aa0.48□□□□□ -2.33
VPS13A-206ENST00000376646 OTORQ9NRC9 128 aa0.48□□□□□ -2.33
VPS13A-206ENST00000376646 TNFSF18Q9UNG2 199 aa0.48□□□□□ -2.33
VPS13A-206ENST00000376646 TECPR2O15040 1411 aa0.48□□□□□ -2.33
VPS13A-206ENST00000376646 YTHDC2Q9H6S0 1430 aaKnown RBP0.48□□□□□ -2.33
VPS13A-206ENST00000376646 COL1A1P02452 1464 aaPredicted RBP0.48□□□□□ -2.33
VPS13A-206ENST00000376646 CEP295Q9C0D2 2601 aa0.48□□□□□ -2.33
VPS13A-206ENST00000376646 TEX15Q9BXT5 2789 aa0.48□□□□□ -2.33
VPS13A-206ENST00000376646 NISCHQ9Y2I1 1504 aa0.48□□□□□ -2.33
VPS13A-206ENST00000376646 ADGBQ8N7X0 1667 aa0.48□□□□□ -2.33
VPS13A-206ENST00000376646 LAMA4Q16363 1823 aa0.48□□□□□ -2.33
VPS13A-206ENST00000376646 H3BQV1 296 aa0.48□□□□□ -2.33
VPS13A-206ENST00000376646 MT-ND6P03923 174 aa0.48□□□□□ -2.33
VPS13A-206ENST00000376646 EFNA4P52798 201 aa0.48□□□□□ -2.33
VPS13A-206ENST00000376646 CHD3Q12873 2000 aaKnown RBP0.48□□□□□ -2.33
VPS13A-206ENST00000376646 OR2H1Q9GZK4 316 aa0.48□□□□□ -2.33
VPS13A-206ENST00000376646 WFDC10AQ9H1F0 79 aa0.48□□□□□ -2.33
VPS13A-206ENST00000376646 MYO18AQ92614 2054 aaKnown RBP0.48□□□□□ -2.33
VPS13A-206ENST00000376646 RFX7Q2KHR2 1363 aa0.47□□□□□ -2.33
VPS13A-206ENST00000376646 STAB2Q8WWQ8 2551 aa0.47□□□□□ -2.33
VPS13A-206ENST00000376646 TRDV1A0A1B0GX56 115 aa0.47□□□□□ -2.33
VPS13A-206ENST00000376646 PPYP01298 95 aa0.47□□□□□ -2.33
VPS13A-206ENST00000376646 VBP1P61758 197 aa0.47□□□□□ -2.33
VPS13A-206ENST00000376646 STX12Q86Y82 276 aa0.47□□□□□ -2.33
VPS13A-206ENST00000376646 PRR15Q8IV56 129 aa0.47□□□□□ -2.33
VPS13A-206ENST00000376646 FAM216BQ8N7L0 139 aa0.47□□□□□ -2.33
VPS13A-206ENST00000376646 TLN1Q9Y490 2541 aaKnown RBP0.47□□□□□ -2.33
VPS13A-206ENST00000376646 ZDBF2Q9HCK1 2354 aa0.47□□□□□ -2.33
VPS13A-206ENST00000376646 PKD1L1Q8TDX9 2849 aa0.47□□□□□ -2.33
VPS13A-206ENST00000376646 IGLV3-32A0A0A0MS00 114 aa0.47□□□□□ -2.33
VPS13A-206ENST00000376646 GABARAPH6UMI1 98 aa0.47□□□□□ -2.33
VPS13A-206ENST00000376646 LYRM1O43325 122 aa0.47□□□□□ -2.33
VPS13A-206ENST00000376646 FABP1P07148 127 aa0.47□□□□□ -2.33
VPS13A-206ENST00000376646 FABP2P12104 132 aa0.47□□□□□ -2.33
VPS13A-206ENST00000376646 CIRBPQ14011 172 aaKnown RBP0.47□□□□□ -2.33
VPS13A-206ENST00000376646 VMA21Q3ZAQ7 101 aa0.47□□□□□ -2.33
VPS13A-206ENST00000376646 TMEM78Q5T7P6 136 aa0.47□□□□□ -2.33
VPS13A-206ENST00000376646 Q8N6K4 173 aa0.47□□□□□ -2.33
VPS13A-206ENST00000376646 TAF9BQ9HBM6 251 aa0.47□□□□□ -2.33
VPS13A-206ENST00000376646 LAMTOR3Q9UHA4 124 aa0.47□□□□□ -2.33
VPS13A-206ENST00000376646 NAT8BQ9UHF3 227 aa0.47□□□□□ -2.33
VPS13A-206ENST00000376646 NUBP2Q9Y5Y2 271 aa0.47□□□□□ -2.33
VPS13A-206ENST00000376646 V9GYQ6 96 aa0.47□□□□□ -2.33
VPS13A-206ENST00000376646 HERC2O95714 4834 aa0.47□□□□□ -2.33
VPS13A-206ENST00000376646 PBRM1Q86U86 1689 aa0.46□□□□□ -2.33
VPS13A-206ENST00000376646 CNTRLQ7Z7A1 2325 aa0.46□□□□□ -2.34
VPS13A-206ENST00000376646 FREM3P0C091 2139 aa0.46□□□□□ -2.34
VPS13A-206ENST00000376646 JMJD7-PLA2G4BH0Y9G9 81 aa0.46□□□□□ -2.34
VPS13A-206ENST00000376646 H7BYZ3 331 aa0.46□□□□□ -2.34
VPS13A-206ENST00000376646 KPNA4O00629 521 aaPredicted RBP0.46□□□□□ -2.34
VPS13A-206ENST00000376646 OR10AG1Q8NH19 301 aa0.46□□□□□ -2.34
VPS13A-206ENST00000376646 LRTM1Q9HBL6 345 aa0.46□□□□□ -2.34
VPS13A-206ENST00000376646 RIF1Q5UIP0 2472 aaKnown RBP0.46□□□□□ -2.34
VPS13A-206ENST00000376646 RTL9Q8NET4 1388 aa0.46□□□□□ -2.34
VPS13A-206ENST00000376646 SPTAN1Q13813 2472 aaKnown RBP0.46□□□□□ -2.34
VPS13A-206ENST00000376646 TRAV23DV6A0A075B6W5 121 aa0.45□□□□□ -2.34
VPS13A-206ENST00000376646 A0A096LPI6 279 aa0.45□□□□□ -2.34
VPS13A-206ENST00000376646 A0A1B0GV72 72 aa0.45□□□□□ -2.34
VPS13A-206ENST00000376646 A0A1W2PRE2 83 aa0.45□□□□□ -2.34
VPS13A-206ENST00000376646 S100A11P31949 105 aa0.45□□□□□ -2.34
VPS13A-206ENST00000376646 PSMF1Q92530 271 aa0.45□□□□□ -2.34
VPS13A-206ENST00000376646 ISOC1Q96CN7 298 aa0.45□□□□□ -2.34
VPS13A-206ENST00000376646 ATPIF1Q9UII2 106 aa0.45□□□□□ -2.34
VPS13A-206ENST00000376646 TPRKBQ9Y3C4 175 aa0.45□□□□□ -2.34
VPS13A-206ENST00000376646 ANKRD31Q8N7Z5 1873 aa0.45□□□□□ -2.34
VPS13A-206ENST00000376646 CNOT1A5YKK6 2376 aaKnown RBP0.45□□□□□ -2.34
VPS13A-206ENST00000376646 TRAPPC8Q9Y2L5 1435 aa0.45□□□□□ -2.34
VPS13A-206ENST00000376646 NUP210Q8TEM1 1887 aaPredicted RBP0.45□□□□□ -2.34
VPS13A-206ENST00000376646 MIR22HGQ0VDD5 57 aa0.45□□□□□ -2.34
VPS13A-206ENST00000376646 DIAPH2-AS1Q14236 149 aa0.45□□□□□ -2.34
VPS13A-206ENST00000376646 HRCT1Q6UXD1 115 aa0.45□□□□□ -2.34
VPS13A-206ENST00000376646 FOXI2Q6ZQN5 318 aa0.45□□□□□ -2.34
VPS13A-206ENST00000376646 RMND5BQ96G75 393 aaPredicted RBP0.45□□□□□ -2.34
VPS13A-206ENST00000376646 OR4C12Q96R67 309 aa0.45□□□□□ -2.34
VPS13A-206ENST00000376646 CCDC32Q9BV29 185 aa0.45□□□□□ -2.34
VPS13A-206ENST00000376646 CST11Q9H112 138 aa0.45□□□□□ -2.34
VPS13A-206ENST00000376646 PPRC1Q5VV67 1664 aaKnown RBP0.45□□□□□ -2.34
VPS13A-206ENST00000376646 AKAP13Q12802 2813 aa0.45□□□□□ -2.34
VPS13A-206ENST00000376646 TET1Q8NFU7 2136 aa0.45□□□□□ -2.34
VPS13A-206ENST00000376646 CELSR3Q9NYQ7 3312 aa0.45□□□□□ -2.34
VPS13A-206ENST00000376646 ASCC3Q8N3C0 2202 aaKnown RBP0.45□□□□□ -2.34
VPS13A-206ENST00000376646 HMCN2Q8NDA2 5059 aa0.45□□□□□ -2.34
VPS13A-206ENST00000376646 ERBINQ96RT1 1412 aa0.45□□□□□ -2.34
VPS13A-206ENST00000376646 BCL2P10415 239 aa0.44□□□□□ -2.34
VPS13A-206ENST00000376646 FABP4P15090 132 aa0.44□□□□□ -2.34
VPS13A-206ENST00000376646 SDC2P34741 201 aa0.44□□□□□ -2.34
VPS13A-206ENST00000376646 SPATA45Q537H7 98 aa0.44□□□□□ -2.34
VPS13A-206ENST00000376646 ZCCHC23Q6ZST2 131 aa0.44□□□□□ -2.34
VPS13A-206ENST00000376646 GRPEL2Q8TAA5 225 aa0.44□□□□□ -2.34
VPS13A-206ENST00000376646 SELENOSQ9BQE4 189 aa0.44□□□□□ -2.34
VPS13A-206ENST00000376646 LIMD2Q9BT23 127 aa0.44□□□□□ -2.34
VPS13A-206ENST00000376646 NIT2Q9NQR4 276 aa0.44□□□□□ -2.34
Retrieved 100 of 20,778 RNA–protein pairs in 104.8 ms