RNA–Protein interactions for RNA: ENST00000357409.9

VPS13A-202, Transcript of vacuolar protein sorting 13 homolog A, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene VPS13A, Length 9,967 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13A-202ENST00000357409 TRAV26-1A0A087WT03 109 aa5.79□□□□□ -1.48
VPS13A-202ENST00000357409 MSRB1Q9NZV6 116 aa5.79□□□□□ -1.48
VPS13A-202ENST00000357409 SLAQ13239 276 aa5.78□□□□□ -1.48
VPS13A-202ENST00000357409 LINC01548A6NM66 108 aa5.78□□□□□ -1.48
VPS13A-202ENST00000357409 GATA3P23771 443 aa5.78□□□□□ -1.48
VPS13A-202ENST00000357409 RBMY1FQ15415 496 aaKnown RBP5.78□□□□□ -1.48
VPS13A-202ENST00000357409 STRCP1A6NGW2 1772 aa5.78□□□□□ -1.48
VPS13A-202ENST00000357409 WT1-ASQ06250 92 aa5.78□□□□□ -1.48
VPS13A-202ENST00000357409 J3QRE1 110 aa5.78□□□□□ -1.48
VPS13A-202ENST00000357409 QSER1Q2KHR3 1735 aa5.78□□□□□ -1.48
VPS13A-202ENST00000357409 PLA2G2CQ5R387 149 aa5.78□□□□□ -1.48
VPS13A-202ENST00000357409 C2orf66Q6UXQ4 117 aa5.78□□□□□ -1.48
VPS13A-202ENST00000357409 LINC01551Q86U37 167 aa5.78□□□□□ -1.48
VPS13A-202ENST00000357409 RBAKDNA6NC62 111 aa5.78□□□□□ -1.48
VPS13A-202ENST00000357409 HIST1H2BKO60814 126 aa5.78□□□□□ -1.48
VPS13A-202ENST00000357409 HIST1H2BJP06899 126 aa5.78□□□□□ -1.48
VPS13A-202ENST00000357409 HIST1H2BOP23527 126 aa5.78□□□□□ -1.48
VPS13A-202ENST00000357409 HIST1H2BBP33778 126 aa5.78□□□□□ -1.48
VPS13A-202ENST00000357409 HIST1H2BDP58876 126 aa5.78□□□□□ -1.48
VPS13A-202ENST00000357409 HIST1H2BCP62807 126 aa5.78□□□□□ -1.48
VPS13A-202ENST00000357409 HIST2H2BEQ16778 126 aa5.78□□□□□ -1.48
VPS13A-202ENST00000357409 HIST2H2BFQ5QNW6 126 aaPredicted RBP5.78□□□□□ -1.48
VPS13A-202ENST00000357409 TRPT1Q86TN4 253 aaKnown RBP5.78□□□□□ -1.48
VPS13A-202ENST00000357409 HIST1H2BHQ93079 126 aa5.78□□□□□ -1.48
VPS13A-202ENST00000357409 HIST1H2BNQ99877 126 aa5.78□□□□□ -1.48
VPS13A-202ENST00000357409 HIST1H2BMQ99879 126 aa5.78□□□□□ -1.48
VPS13A-202ENST00000357409 USP54Q70EL1 1684 aa5.78□□□□□ -1.48
VPS13A-202ENST00000357409 SHISA9B4DS77 424 aa5.78□□□□□ -1.48
VPS13A-202ENST00000357409 K7ERJ3 54 aa5.78□□□□□ -1.48
VPS13A-202ENST00000357409 DYNAPQ8N1N2 210 aa5.78□□□□□ -1.48
VPS13A-202ENST00000357409 CCDC88CQ9P219 2028 aa5.78□□□□□ -1.48
VPS13A-202ENST00000357409 LY6G5BQ8NDX9 201 aa5.78□□□□□ -1.48
VPS13A-202ENST00000357409 TP53TG3Q9ULZ0 132 aa5.78□□□□□ -1.48
VPS13A-202ENST00000357409 THADAQ6YHU6 1953 aa5.78□□□□□ -1.48
VPS13A-202ENST00000357409 FGF6P10767 208 aa5.77□□□□□ -1.48
VPS13A-202ENST00000357409 BOD1L2Q8IYS8 172 aa5.77□□□□□ -1.48
VPS13A-202ENST00000357409 SMDT1Q9H4I9 107 aa5.77□□□□□ -1.48
VPS13A-202ENST00000357409 CD5P06127 495 aa5.77□□□□□ -1.49
VPS13A-202ENST00000357409 CD5LO43866 347 aa5.77□□□□□ -1.49
VPS13A-202ENST00000357409 EGR2P11161 476 aaPredicted RBP5.77□□□□□ -1.49
VPS13A-202ENST00000357409 C9orf153Q5TBE3 101 aa5.77□□□□□ -1.49
VPS13A-202ENST00000357409 LINC00526Q96FQ7 95 aa5.77□□□□□ -1.49
VPS13A-202ENST00000357409 MRPL51Q4U2R6 128 aaKnown RBP5.77□□□□□ -1.49
VPS13A-202ENST00000357409 TRGV9Q99603 122 aa5.77□□□□□ -1.49
VPS13A-202ENST00000357409 KLF12Q9Y4X4 402 aa5.77□□□□□ -1.49
VPS13A-202ENST00000357409 BCORQ6W2J9 1755 aa5.77□□□□□ -1.49
VPS13A-202ENST00000357409 PTPRFP10586 1907 aa5.77□□□□□ -1.49
VPS13A-202ENST00000357409 E7EUB6 86 aa5.77□□□□□ -1.49
VPS13A-202ENST00000357409 LGALS1P09382 135 aaKnown RBP5.77□□□□□ -1.49
VPS13A-202ENST00000357409 C9orf66Q5T8R8 295 aa5.77□□□□□ -1.49
VPS13A-202ENST00000357409 FER1L5A0AVI2 2057 aa5.77□□□□□ -1.49
VPS13A-202ENST00000357409 CACNA1GO43497 2377 aa5.77□□□□□ -1.49
VPS13A-202ENST00000357409 SEC11AP67812 179 aa5.76□□□□□ -1.49
VPS13A-202ENST00000357409 CAMK2N2Q96S95 79 aa5.76□□□□□ -1.49
VPS13A-202ENST00000357409 GNB1LQ9BYB4 327 aa5.76□□□□□ -1.49
VPS13A-202ENST00000357409 BRWD3Q6RI45 1802 aa5.76□□□□□ -1.49
VPS13A-202ENST00000357409 NDUFS8O00217 210 aa5.76□□□□□ -1.49
VPS13A-202ENST00000357409 IGHV2-5P01817 119 aa5.76□□□□□ -1.49
VPS13A-202ENST00000357409 CMC4P56277 68 aaPredicted RBP5.76□□□□□ -1.49
VPS13A-202ENST00000357409 HIST1H2BLQ99880 126 aa5.76□□□□□ -1.49
VPS13A-202ENST00000357409 POLEQ07864 2286 aa5.76□□□□□ -1.49
VPS13A-202ENST00000357409 A0A1W2PNU3 283 aaPredicted RBP5.76□□□□□ -1.49
VPS13A-202ENST00000357409 RSPO1Q2MKA7 263 aaPredicted RBP5.76□□□□□ -1.49
VPS13A-202ENST00000357409 C18orf65Q6ZTR6 163 aa5.76□□□□□ -1.49
VPS13A-202ENST00000357409 NPYP01303 97 aa5.76□□□□□ -1.49
VPS13A-202ENST00000357409 OXLD1Q5BKU9 147 aa5.76□□□□□ -1.49
VPS13A-202ENST00000357409 NDUFAF3Q9BU61 184 aa5.76□□□□□ -1.49
VPS13A-202ENST00000357409 MYMXA0A1B0GTQ4 84 aa5.76□□□□□ -1.49
VPS13A-202ENST00000357409 PRAC2D3DTV9 90 aa5.76□□□□□ -1.49
VPS13A-202ENST00000357409 FAM90A2PQ658T7 463 aa5.76□□□□□ -1.49
VPS13A-202ENST00000357409 AMBPP02760 352 aa5.76□□□□□ -1.49
VPS13A-202ENST00000357409 I3L3M4 83 aa5.76□□□□□ -1.49
VPS13A-202ENST00000357409 UBE2AP49459 152 aa5.76□□□□□ -1.49
VPS13A-202ENST00000357409 CSRP3P50461 194 aa5.76□□□□□ -1.49
VPS13A-202ENST00000357409 C15orf53Q8NAA6 179 aa5.76□□□□□ -1.49
VPS13A-202ENST00000357409 NMSQ5H8A3 153 aa5.76□□□□□ -1.49
VPS13A-202ENST00000357409 HHLA3Q9XRX5 114 aa5.76□□□□□ -1.49
VPS13A-202ENST00000357409 OPRPNQ99935 248 aaPredicted RBP5.75□□□□□ -1.49
VPS13A-202ENST00000357409 SIGLEC8Q9NYZ4 499 aa5.75□□□□□ -1.49
VPS13A-202ENST00000357409 ATAD5Q96QE3 1844 aa5.75□□□□□ -1.49
VPS13A-202ENST00000357409 CABIN1Q9Y6J0 2220 aa5.75□□□□□ -1.49
VPS13A-202ENST00000357409 TRAV4A0A0B4J268 109 aa5.75□□□□□ -1.49
VPS13A-202ENST00000357409 TRACP01848 142 aa5.75□□□□□ -1.49
VPS13A-202ENST00000357409 ZNF491Q8N8L2 437 aa5.75□□□□□ -1.49
VPS13A-202ENST00000357409 PPDPFQ9H3Y8 114 aa5.75□□□□□ -1.49
VPS13A-202ENST00000357409 PDCD11Q14690 1871 aaKnown RBP5.75□□□□□ -1.49
VPS13A-202ENST00000357409 IGLV3-32A0A0A0MS00 114 aa5.75□□□□□ -1.49
VPS13A-202ENST00000357409 C1orf43Q9BWL3 253 aa5.75□□□□□ -1.49
VPS13A-202ENST00000357409 MRPL35Q9NZE8 188 aaKnown RBP5.75□□□□□ -1.49
VPS13A-202ENST00000357409 ZNF726P1Q15940 193 aa5.75□□□□□ -1.49
VPS13A-202ENST00000357409 VOPP1Q96AW1 172 aa5.75□□□□□ -1.49
VPS13A-202ENST00000357409 TTTY13Q9BZ97 58 aa5.75□□□□□ -1.49
VPS13A-202ENST00000357409 ADAMTS7Q9UKP4 1686 aa5.75□□□□□ -1.49
VPS13A-202ENST00000357409 KIR3DS1Q14943 382 aa5.75□□□□□ -1.49
VPS13A-202ENST00000357409 C4orf48Q5BLP8 95 aa5.75□□□□□ -1.49
VPS13A-202ENST00000357409 BAALCQ8WXS3 180 aa5.75□□□□□ -1.49
VPS13A-202ENST00000357409 RP1P56715 2156 aa5.75□□□□□ -1.49
VPS13A-202ENST00000357409 TMEM238C9JI98 176 aa5.75□□□□□ -1.49
VPS13A-202ENST00000357409 Q6AWC8 147 aa5.74□□□□□ -1.49
VPS13A-202ENST00000357409 NBL1P41271 181 aa5.74□□□□□ -1.49
Retrieved 100 of 20,778 RNA–protein pairs in 28.8 ms