RNA–Protein interactions for RNA: ENST00000341485.9

TPM3-208, Transcript of tropomyosin 3, humanhuman

TSL 1 (best) BASIC

Gene TPM3, Length 2,063 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TPM3-208ENST00000341485 MRPL52Q86TS9 123 aaKnown RBP11.59□□□□□ -0.55
TPM3-208ENST00000341485 CCDC140Q96MF4 163 aa11.59□□□□□ -0.55
TPM3-208ENST00000341485 IGHV1-24A0A0C4DH33 117 aa11.59□□□□□ -0.55
TPM3-208ENST00000341485 Q6AWC8 147 aa11.59□□□□□ -0.55
TPM3-208ENST00000341485 VGLL1Q99990 258 aa11.59□□□□□ -0.55
TPM3-208ENST00000341485 CSMD2Q7Z408 3487 aa11.59□□□□□ -0.55
TPM3-208ENST00000341485 A6NDX4 124 aa11.58□□□□□ -0.56
TPM3-208ENST00000341485 LINC00614P0C842 121 aa11.58□□□□□ -0.56
TPM3-208ENST00000341485 RELQ04864 619 aaPredicted RBP11.58□□□□□ -0.56
TPM3-208ENST00000341485 DEFB112Q30KQ8 113 aa11.58□□□□□ -0.56
TPM3-208ENST00000341485 MAJINQ3KP22 176 aa11.58□□□□□ -0.56
TPM3-208ENST00000341485 PRR25Q96S07 402 aa11.58□□□□□ -0.56
TPM3-208ENST00000341485 FOXC2Q99958 501 aa11.58□□□□□ -0.56
TPM3-208ENST00000341485 TPPP3Q9BW30 176 aa11.58□□□□□ -0.56
TPM3-208ENST00000341485 TMSB15BA0A087X1C1 80 aa11.58□□□□□ -0.56
TPM3-208ENST00000341485 A0A1B0GW15 77 aa11.58□□□□□ -0.56
TPM3-208ENST00000341485 TMEM189A5PLL7 270 aa11.58□□□□□ -0.56
TPM3-208ENST00000341485 IGLC3P0DOY3 106 aa11.58□□□□□ -0.56
TPM3-208ENST00000341485 ZNF138P52744 262 aa11.58□□□□□ -0.56
TPM3-208ENST00000341485 LINC00173Q6ZV60 143 aa11.58□□□□□ -0.56
TPM3-208ENST00000341485 Q8TAT8 98 aa11.58□□□□□ -0.56
TPM3-208ENST00000341485 CLPSL1A2RUU4 121 aa11.57□□□□□ -0.56
TPM3-208ENST00000341485 SSTP61278 116 aa11.57□□□□□ -0.56
TPM3-208ENST00000341485 SAPCD1Q5SSQ6 148 aa11.57□□□□□ -0.56
TPM3-208ENST00000341485 CLEC19AQ6UXS0 136 aa11.57□□□□□ -0.56
TPM3-208ENST00000341485 NAV2Q8IVL1 2488 aa11.57□□□□□ -0.56
TPM3-208ENST00000341485 M0QZK8 103 aa11.56□□□□□ -0.56
TPM3-208ENST00000341485 BUB3O43684 328 aa11.56□□□□□ -0.56
TPM3-208ENST00000341485 S100A7P31151 101 aa11.56□□□□□ -0.56
TPM3-208ENST00000341485 LYZL1Q6UWQ5 148 aa11.56□□□□□ -0.56
TPM3-208ENST00000341485 TMEM70Q9BUB7 260 aa11.56□□□□□ -0.56
TPM3-208ENST00000341485 ABCA12Q86UK0 2595 aa11.56□□□□□ -0.56
TPM3-208ENST00000341485 A0A087X0K7 114 aa11.56□□□□□ -0.56
TPM3-208ENST00000341485 FBLL1A6NHQ2 334 aaKnown RBP11.56□□□□□ -0.56
TPM3-208ENST00000341485 FSHBP01225 129 aa11.56□□□□□ -0.56
TPM3-208ENST00000341485 ZNF80P51504 273 aaPredicted RBP11.56□□□□□ -0.56
TPM3-208ENST00000341485 UQCR10Q9UDW1 63 aa11.56□□□□□ -0.56
TPM3-208ENST00000341485 SVEP1Q4LDE5 3571 aa11.56□□□□□ -0.56
TPM3-208ENST00000341485 UNQ5830/PRO19650/PRO19816Q6UY13 95 aa11.55□□□□□ -0.56
TPM3-208ENST00000341485 ZNF493Q6ZR52 646 aa11.55□□□□□ -0.56
TPM3-208ENST00000341485 EEF1AKMT3Q96AZ1 226 aa11.55□□□□□ -0.56
TPM3-208ENST00000341485 TRAV9-2A0A087WT02 112 aa11.55□□□□□ -0.56
TPM3-208ENST00000341485 IGHV3-66A0A0C4DH42 116 aa11.55□□□□□ -0.56
TPM3-208ENST00000341485 TMEM213A2RRL7 107 aa11.55□□□□□ -0.56
TPM3-208ENST00000341485 CSN3P07498 182 aa11.55□□□□□ -0.56
TPM3-208ENST00000341485 PRRC2AP48634 2157 aaKnown RBP11.54□□□□□ -0.56
TPM3-208ENST00000341485 PRAC2D3DTV9 90 aa11.54□□□□□ -0.56
TPM3-208ENST00000341485 TCAPO15273 167 aa11.54□□□□□ -0.56
TPM3-208ENST00000341485 LEPROTL1O95214 131 aa11.54□□□□□ -0.56
TPM3-208ENST00000341485 IGHV4-59P01825 116 aa11.54□□□□□ -0.56
TPM3-208ENST00000341485 RAB9AP51151 201 aa11.54□□□□□ -0.56
TPM3-208ENST00000341485 ERCC8Q13216 396 aa11.54□□□□□ -0.56
TPM3-208ENST00000341485 C9orf139Q6ZV77 190 aa11.54□□□□□ -0.56
TPM3-208ENST00000341485 TRBV7-1A0A0A6YYK4 115 aa11.53□□□□□ -0.56
TPM3-208ENST00000341485 CRXO43186 299 aaPredicted RBP11.53□□□□□ -0.56
TPM3-208ENST00000341485 C19orf54Q5BKX5 351 aa11.53□□□□□ -0.56
TPM3-208ENST00000341485 DMRTA1Q5VZB9 504 aa11.53□□□□□ -0.56
TPM3-208ENST00000341485 RNF182Q8N6D2 247 aa11.53□□□□□ -0.56
TPM3-208ENST00000341485 KLHDC1Q8N7A1 406 aa11.53□□□□□ -0.56
TPM3-208ENST00000341485 APCP25054 2843 aa11.53□□□□□ -0.56
TPM3-208ENST00000341485 IGHV3OR16-13A0A075B7E8 117 aa11.53□□□□□ -0.56
TPM3-208ENST00000341485 IGHV3-74A0A0B4J1X5 117 aa11.53□□□□□ -0.56
TPM3-208ENST00000341485 TRAV41A0A0B4J266 112 aa11.53□□□□□ -0.56
TPM3-208ENST00000341485 SYS1-DBNDD2H3BUS1 97 aa11.53□□□□□ -0.56
TPM3-208ENST00000341485 ZNF575Q86XF7 245 aa11.53□□□□□ -0.56
TPM3-208ENST00000341485 TEX29Q8N6K0 151 aa11.53□□□□□ -0.56
TPM3-208ENST00000341485 HELZ2Q9BYK8 2649 aaKnown RBP11.53□□□□□ -0.56
TPM3-208ENST00000341485 CENPEQ02224 2701 aa11.52□□□□□ -0.56
TPM3-208ENST00000341485 MUC21A0A0G2JKD1 596 aa11.52□□□□□ -0.57
TPM3-208ENST00000341485 MUC21A0A140T8X8 626 aa11.52□□□□□ -0.57
TPM3-208ENST00000341485 ZNF207O43670 478 aaKnown RBP11.52□□□□□ -0.57
TPM3-208ENST00000341485 OR5AL1P0C617 328 aa11.52□□□□□ -0.57
TPM3-208ENST00000341485 BMI1P35226 326 aa11.52□□□□□ -0.57
TPM3-208ENST00000341485 MUC21Q5SSG8 566 aa11.52□□□□□ -0.57
TPM3-208ENST00000341485 Q6ZN92 141 aa11.52□□□□□ -0.57
TPM3-208ENST00000341485 LINC00527Q9UJ94 153 aa11.52□□□□□ -0.57
TPM3-208ENST00000341485 IGHV3-49A0A0A0MS15 119 aa11.51□□□□□ -0.57
TPM3-208ENST00000341485 RPLP1P05386 114 aaKnown RBP11.51□□□□□ -0.57
TPM3-208ENST00000341485 IGLL1P15814 213 aa11.51□□□□□ -0.57
TPM3-208ENST00000341485 RPS20P60866 119 aaKnown RBP11.51□□□□□ -0.57
TPM3-208ENST00000341485 ATP5G2Q06055 141 aa11.51□□□□□ -0.57
TPM3-208ENST00000341485 BATFQ16520 125 aa11.51□□□□□ -0.57
TPM3-208ENST00000341485 FAM104BQ5XKR9 115 aa11.51□□□□□ -0.57
TPM3-208ENST00000341485 NBPF19A0A087WUL8 3843 aa11.51□□□□□ -0.57
TPM3-208ENST00000341485 C20orf202A1L168 122 aa11.51□□□□□ -0.57
TPM3-208ENST00000341485 IGLC6P0CF74 106 aa11.51□□□□□ -0.57
TPM3-208ENST00000341485 HNRNPA3P51991 378 aaKnown RBP11.51□□□□□ -0.57
TPM3-208ENST00000341485 CRIP2P52943 208 aaPredicted RBP11.51□□□□□ -0.57
TPM3-208ENST00000341485 AMN1Q8IY45 258 aa11.51□□□□□ -0.57
TPM3-208ENST00000341485 FER1L6-AS1Q8NA97 138 aa11.51□□□□□ -0.57
TPM3-208ENST00000341485 SLC50A1Q9BRV3 221 aa11.51□□□□□ -0.57
TPM3-208ENST00000341485 U3KQK5 164 aa11.51□□□□□ -0.57
TPM3-208ENST00000341485 OR4C46A6NHA9 309 aa11.5□□□□□ -0.57
TPM3-208ENST00000341485 D6R8Y8 96 aa11.5□□□□□ -0.57
TPM3-208ENST00000341485 IGHG2P01859 326 aa11.5□□□□□ -0.57
TPM3-208ENST00000341485 BLCAPP62952 87 aa11.5□□□□□ -0.57
TPM3-208ENST00000341485 SRSF2Q01130 221 aaKnown RBP11.5□□□□□ -0.57
TPM3-208ENST00000341485 Q6YL49 198 aa11.5□□□□□ -0.57
TPM3-208ENST00000341485 METTL26Q96S19 204 aa11.5□□□□□ -0.57
TPM3-208ENST00000341485 U3KQE9 123 aa11.5□□□□□ -0.57
Retrieved 100 of 20,778 RNA–protein pairs in 38.4 ms