RNA–Protein interactions for RNA: ENST00000340958.3

CLDN4-201, Transcript of claudin 4, humanhuman

APPRIS P1 BASIC

Gene CLDN4, Length 1,831 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLDN4-201ENST00000340958 PSG8Q9UQ74 426 aa13.12□□□□□ -0.31
CLDN4-201ENST00000340958 H7BYZ3 331 aa13.11□□□□□ -0.31
CLDN4-201ENST00000340958 K7EN84 100 aa13.11□□□□□ -0.31
CLDN4-201ENST00000340958 FHL3Q13643 280 aa13.11□□□□□ -0.31
CLDN4-201ENST00000340958 PRR27Q6MZM9 219 aa13.11□□□□□ -0.31
CLDN4-201ENST00000340958 RBPMS2Q6ZRY4 209 aaKnown RBP13.11□□□□□ -0.31
CLDN4-201ENST00000340958 Q86TA4 180 aa13.11□□□□□ -0.31
CLDN4-201ENST00000340958 CTDSP1Q9GZU7 261 aa13.11□□□□□ -0.31
CLDN4-201ENST00000340958 MS4A6AQ9H2W1 248 aa13.11□□□□□ -0.31
CLDN4-201ENST00000340958 OVOL1O14753 267 aa13.11□□□□□ -0.31
CLDN4-201ENST00000340958 PPP1R2P9O14990 202 aa13.11□□□□□ -0.31
CLDN4-201ENST00000340958 LTAP01374 205 aa13.11□□□□□ -0.31
CLDN4-201ENST00000340958 C12orf54Q6X4T0 127 aa13.11□□□□□ -0.31
CLDN4-201ENST00000340958 MRPL53Q96EL3 112 aaKnown RBP13.11□□□□□ -0.31
CLDN4-201ENST00000340958 KRTAP10-3P60369 221 aa13.1□□□□□ -0.31
CLDN4-201ENST00000340958 OR10G8Q8NGN5 311 aa13.1□□□□□ -0.31
CLDN4-201ENST00000340958 CSN3P07498 182 aa13.09□□□□□ -0.31
CLDN4-201ENST00000340958 SMIM12Q96EX1 92 aa13.09□□□□□ -0.31
CLDN4-201ENST00000340958 ZFP30Q9Y2G7 519 aa13.09□□□□□ -0.31
CLDN4-201ENST00000340958 FBLL1A6NHQ2 334 aaKnown RBP13.09□□□□□ -0.31
CLDN4-201ENST00000340958 PRAC2D3DTV9 90 aa13.09□□□□□ -0.31
CLDN4-201ENST00000340958 SOCS3O14543 225 aa13.09□□□□□ -0.31
CLDN4-201ENST00000340958 GCGP01275 180 aa13.09□□□□□ -0.31
CLDN4-201ENST00000340958 IGLV2-11P01706 119 aa13.09□□□□□ -0.31
CLDN4-201ENST00000340958 IGLV2-8P01709 118 aa13.09□□□□□ -0.31
CLDN4-201ENST00000340958 PF4P02776 101 aa13.09□□□□□ -0.31
CLDN4-201ENST00000340958 SNRPD3P62318 126 aaKnown RBP13.09□□□□□ -0.31
CLDN4-201ENST00000340958 VGLL1Q99990 258 aa13.09□□□□□ -0.31
CLDN4-201ENST00000340958 NDFIP1Q9BT67 221 aa13.09□□□□□ -0.31
CLDN4-201ENST00000340958 TMEM242Q9NWH2 141 aa13.09□□□□□ -0.31
CLDN4-201ENST00000340958 URGCP-MRPS24S4R325 110 aa13.09□□□□□ -0.31
CLDN4-201ENST00000340958 S100PP25815 95 aa13.08□□□□□ -0.32
CLDN4-201ENST00000340958 ERCC8Q13216 396 aa13.08□□□□□ -0.32
CLDN4-201ENST00000340958 IBA57Q5T440 356 aaKnown RBP13.08□□□□□ -0.32
CLDN4-201ENST00000340958 TMEM183AQ8IXX5 376 aa13.08□□□□□ -0.32
CLDN4-201ENST00000340958 DAZAP1Q96EP5 407 aaKnown RBP13.08□□□□□ -0.32
CLDN4-201ENST00000340958 C20orf173Q96LM9 149 aa13.08□□□□□ -0.32
CLDN4-201ENST00000340958 ASCL2Q99929 193 aa13.08□□□□□ -0.32
CLDN4-201ENST00000340958 RNASE7Q9H1E1 156 aaKnown RBP13.08□□□□□ -0.32
CLDN4-201ENST00000340958 TRBV6-1A0A0K0K1D8 114 aa13.07□□□□□ -0.32
CLDN4-201ENST00000340958 RBAKDNA6NC62 111 aa13.07□□□□□ -0.32
CLDN4-201ENST00000340958 CXorf65A6NEN9 183 aa13.07□□□□□ -0.32
CLDN4-201ENST00000340958 SAPCD1Q5SSQ6 148 aa13.07□□□□□ -0.32
CLDN4-201ENST00000340958 TMEM78Q5T7P6 136 aa13.07□□□□□ -0.32
CLDN4-201ENST00000340958 ADAMTSL5Q6ZMM2 481 aa13.07□□□□□ -0.32
CLDN4-201ENST00000340958 OR10J6PQ8NGY7 276 aa13.07□□□□□ -0.32
CLDN4-201ENST00000340958 DCANP1Q8TF63 244 aa13.07□□□□□ -0.32
CLDN4-201ENST00000340958 ADARB2-AS1A8MUL3 147 aa13.06□□□□□ -0.32
CLDN4-201ENST00000340958 CT45A10P0DMU9 189 aa13.06□□□□□ -0.32
CLDN4-201ENST00000340958 Q8TAT8 98 aa13.06□□□□□ -0.32
CLDN4-201ENST00000340958 ZNF688P0C7X2 276 aa13.06□□□□□ -0.32
CLDN4-201ENST00000340958 C3orf56Q8N813 242 aa13.06□□□□□ -0.32
CLDN4-201ENST00000340958 ZNF705GA8MUZ8 300 aaPredicted RBP13.05□□□□□ -0.32
CLDN4-201ENST00000340958 ELOBQ15370 118 aa13.05□□□□□ -0.32
CLDN4-201ENST00000340958 PSMG4Q5JS54 123 aa13.05□□□□□ -0.32
CLDN4-201ENST00000340958 KCNIP4Q6PIL6 250 aa13.05□□□□□ -0.32
CLDN4-201ENST00000340958 MLST8Q9BVC4 326 aa13.05□□□□□ -0.32
CLDN4-201ENST00000340958 GSN-AS1Q9NRJ2 163 aa13.05□□□□□ -0.32
CLDN4-201ENST00000340958 SAP30O75446 220 aa13.04□□□□□ -0.32
CLDN4-201ENST00000340958 HOXA5P20719 270 aa13.04□□□□□ -0.32
CLDN4-201ENST00000340958 HIST1H1AQ02539 215 aaPredicted RBP13.04□□□□□ -0.32
CLDN4-201ENST00000340958 NIT2Q9NQR4 276 aa13.04□□□□□ -0.32
CLDN4-201ENST00000340958 OSTCQ9NRP0 149 aa13.04□□□□□ -0.32
CLDN4-201ENST00000340958 ZMAT5Q9UDW3 170 aaKnown RBP13.04□□□□□ -0.32
CLDN4-201ENST00000340958 K7EQG2 157 aa13.04□□□□□ -0.32
CLDN4-201ENST00000340958 ZNF705DP0CH99 300 aaPredicted RBP13.04□□□□□ -0.32
CLDN4-201ENST00000340958 ZNF705BP0CI00 300 aaPredicted RBP13.04□□□□□ -0.32
CLDN4-201ENST00000340958 RPS10P46783 165 aaKnown RBP13.04□□□□□ -0.32
CLDN4-201ENST00000340958 DEFB114Q30KQ6 69 aa13.04□□□□□ -0.32
CLDN4-201ENST00000340958 TMEM61Q8N0U2 210 aa13.04□□□□□ -0.32
CLDN4-201ENST00000340958 C8orf49Q96NF6 230 aa13.04□□□□□ -0.32
CLDN4-201ENST00000340958 LINC00587B1AMM8 73 aa13.03□□□□□ -0.32
CLDN4-201ENST00000340958 GATCO43716 136 aaKnown RBP13.03□□□□□ -0.32
CLDN4-201ENST00000340958 P01737 135 aa13.03□□□□□ -0.32
CLDN4-201ENST00000340958 CXCL1P09341 107 aa13.03□□□□□ -0.32
CLDN4-201ENST00000340958 ZNF138P52744 262 aa13.03□□□□□ -0.32
CLDN4-201ENST00000340958 CD300EQ496F6 205 aaPredicted RBP13.03□□□□□ -0.32
CLDN4-201ENST00000340958 PRR25Q96S07 402 aa13.03□□□□□ -0.32
CLDN4-201ENST00000340958 AGPAT4-IT1Q9H0P7 198 aa13.03□□□□□ -0.32
CLDN4-201ENST00000340958 NUDT10Q8NFP7 164 aa13.02□□□□□ -0.32
CLDN4-201ENST00000340958 NUDT11Q96G61 164 aa13.02□□□□□ -0.32
CLDN4-201ENST00000340958 ZC2HC1AQ96GY0 325 aa13.02□□□□□ -0.32
CLDN4-201ENST00000340958 F6UB75 175 aa13.02□□□□□ -0.33
CLDN4-201ENST00000340958 C9orf47Q6ZRZ4 202 aa13.02□□□□□ -0.33
CLDN4-201ENST00000340958 FAM231DQ6ZW35 169 aa13.02□□□□□ -0.33
CLDN4-201ENST00000340958 OR8A1Q8NGG7 326 aa13.02□□□□□ -0.33
CLDN4-201ENST00000340958 ZNF747Q9BV97 191 aa13.02□□□□□ -0.33
CLDN4-201ENST00000340958 DEFB1P60022 68 aa13.01□□□□□ -0.33
CLDN4-201ENST00000340958 EBLN2Q6P2I7 272 aa13.01□□□□□ -0.33
CLDN4-201ENST00000340958 LINC00477Q96M19 166 aa13.01□□□□□ -0.33
CLDN4-201ENST00000340958 PPP1R14DQ9NXH3 145 aa13.01□□□□□ -0.33
CLDN4-201ENST00000340958 SIGLEC8Q9NYZ4 499 aa13.01□□□□□ -0.33
CLDN4-201ENST00000340958 V9GYV3 84 aa13.01□□□□□ -0.33
CLDN4-201ENST00000340958 TRRAPQ9Y4A5 3859 aa13□□□□□ -0.33
CLDN4-201ENST00000340958 OR4C46A6NHA9 309 aa13□□□□□ -0.33
CLDN4-201ENST00000340958 CITED1Q99966 193 aa13□□□□□ -0.33
CLDN4-201ENST00000340958 GPR61Q9BZJ8 451 aa13□□□□□ -0.33
CLDN4-201ENST00000340958 IL36BQ9NZH7 164 aa13□□□□□ -0.33
CLDN4-201ENST00000340958 ZNF492Q9P255 531 aa13□□□□□ -0.33
CLDN4-201ENST00000340958 TGIF2-C20orf24A0A0A6YYL0 155 aa12.99□□□□□ -0.33
Retrieved 100 of 20,778 RNA–protein pairs in 28.6 ms