RNA–Protein interactions for RNA: ENST00000339859.8

USP54-201, Transcript of ubiquitin specific peptidase 54, humanhuman

APPRIS P1 TSL 5 BASIC

Gene USP54, Length 6,247 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-201ENST00000339859 TRPT1Q86TN4 253 aaKnown RBP7.9□□□□□ -1.15
USP54-201ENST00000339859 PIFOQ8TCI5 191 aa7.9□□□□□ -1.15
USP54-201ENST00000339859 ZNF48Q96MX3 618 aaPredicted RBP7.9□□□□□ -1.15
USP54-201ENST00000339859 GZMBP10144 247 aa7.89□□□□□ -1.15
USP54-201ENST00000339859 EBI3Q14213 229 aa7.89□□□□□ -1.15
USP54-201ENST00000339859 MED12LQ86YW9 2145 aa7.89□□□□□ -1.15
USP54-201ENST00000339859 TRAV8-1A0A0A6YYK1 113 aa7.89□□□□□ -1.15
USP54-201ENST00000339859 NDUFA7O95182 113 aa7.89□□□□□ -1.15
USP54-201ENST00000339859 TMEM170BQ5T4T1 132 aa7.89□□□□□ -1.15
USP54-201ENST00000339859 OR5A1Q8NGJ0 315 aa7.89□□□□□ -1.15
USP54-201ENST00000339859 VWC2Q2TAL6 325 aa7.89□□□□□ -1.15
USP54-201ENST00000339859 APRG1Q8IVJ8 170 aa7.89□□□□□ -1.15
USP54-201ENST00000339859 C5orf30Q96GV9 206 aa7.89□□□□□ -1.15
USP54-201ENST00000339859 KLK5Q9Y337 293 aaPredicted RBP7.89□□□□□ -1.15
USP54-201ENST00000339859 VCYO14598 125 aa7.89□□□□□ -1.15
USP54-201ENST00000339859 PMCHL1Q16048 86 aa7.89□□□□□ -1.15
USP54-201ENST00000339859 PRR31Q5SQ13 230 aa7.89□□□□□ -1.15
USP54-201ENST00000339859 PSMG3-AS1Q96PY0 264 aa7.89□□□□□ -1.15
USP54-201ENST00000339859 IFITM2Q01629 132 aa7.88□□□□□ -1.15
USP54-201ENST00000339859 MRAP2Q96G30 205 aa7.88□□□□□ -1.15
USP54-201ENST00000339859 WI2-2373I1.2A0A1W2PRP0 233 aa7.88□□□□□ -1.15
USP54-201ENST00000339859 PYGO2Q9BRQ0 406 aa7.88□□□□□ -1.15
USP54-201ENST00000339859 GNB1LQ9BYB4 327 aa7.88□□□□□ -1.15
USP54-201ENST00000339859 M0R143 59 aa7.88□□□□□ -1.15
USP54-201ENST00000339859 ARMS2P0C7Q2 107 aa7.88□□□□□ -1.15
USP54-201ENST00000339859 EVI2AP22794 236 aa7.88□□□□□ -1.15
USP54-201ENST00000339859 FXYD5Q96DB9 178 aa7.88□□□□□ -1.15
USP54-201ENST00000339859 RTTNQ86VV8 2226 aa7.88□□□□□ -1.15
USP54-201ENST00000339859 TMEM238LA0A1B0GVL6 79 aa7.88□□□□□ -1.15
USP54-201ENST00000339859 PGPEP1LA6NFU8 196 aa7.88□□□□□ -1.15
USP54-201ENST00000339859 A6NJY4 79 aa7.88□□□□□ -1.15
USP54-201ENST00000339859 LGALS9O00182 355 aa7.88□□□□□ -1.15
USP54-201ENST00000339859 IGLV2-14P01704 120 aa7.88□□□□□ -1.15
USP54-201ENST00000339859 RAB37Q96AX2 223 aa7.88□□□□□ -1.15
USP54-201ENST00000339859 TOMM7Q9P0U1 55 aa7.88□□□□□ -1.15
USP54-201ENST00000339859 M0R2P5 195 aa7.88□□□□□ -1.15
USP54-201ENST00000339859 PRR20EP86478 221 aa7.88□□□□□ -1.15
USP54-201ENST00000339859 PRR20CP86479 221 aa7.88□□□□□ -1.15
USP54-201ENST00000339859 PRR20DP86480 221 aa7.88□□□□□ -1.15
USP54-201ENST00000339859 PRR20BP86481 221 aa7.88□□□□□ -1.15
USP54-201ENST00000339859 PRR20AP86496 221 aa7.88□□□□□ -1.15
USP54-201ENST00000339859 LENEPQ9Y5L5 61 aa7.88□□□□□ -1.15
USP54-201ENST00000339859 SPART-AS1P0CW21 52 aa7.87□□□□□ -1.15
USP54-201ENST00000339859 SRSF2Q01130 221 aaKnown RBP7.87□□□□□ -1.15
USP54-201ENST00000339859 C14orf178Q8N769 122 aaPredicted RBP7.87□□□□□ -1.15
USP54-201ENST00000339859 ZNF702PQ9H963 129 aa7.87□□□□□ -1.15
USP54-201ENST00000339859 ANXA2RQ3ZCQ2 193 aa7.87□□□□□ -1.15
USP54-201ENST00000339859 A0A087WWL8 130 aa7.87□□□□□ -1.15
USP54-201ENST00000339859 HOXA5P20719 270 aa7.87□□□□□ -1.15
USP54-201ENST00000339859 LAGE3Q14657 143 aa7.87□□□□□ -1.15
USP54-201ENST00000339859 PRR25Q96S07 402 aa7.87□□□□□ -1.15
USP54-201ENST00000339859 KIAA2026Q5HYC2 2103 aa7.87□□□□□ -1.15
USP54-201ENST00000339859 UBE2CO00762 179 aa7.87□□□□□ -1.15
USP54-201ENST00000339859 DLX4Q92988 240 aaPredicted RBP7.87□□□□□ -1.15
USP54-201ENST00000339859 KIRREL3-AS3Q8N7Y1 241 aaPredicted RBP7.87□□□□□ -1.15
USP54-201ENST00000339859 C18orf15Q96N68 181 aa7.87□□□□□ -1.15
USP54-201ENST00000339859 SS18Q15532 418 aa7.86□□□□□ -1.15
USP54-201ENST00000339859 SSBP4Q9BWG4 385 aaPredicted RBP7.86□□□□□ -1.15
USP54-201ENST00000339859 DERL1Q9BUN8 251 aa7.86□□□□□ -1.15
USP54-201ENST00000339859 ABCA4P78363 2273 aa7.86□□□□□ -1.15
USP54-201ENST00000339859 TRBV25-1A0A075B6N4 114 aa7.86□□□□□ -1.15
USP54-201ENST00000339859 JOSD1Q15040 202 aaPredicted RBP7.86□□□□□ -1.15
USP54-201ENST00000339859 HINT1P49773 126 aaPredicted RBP7.86□□□□□ -1.15
USP54-201ENST00000339859 LINC01551Q86U37 167 aa7.86□□□□□ -1.15
USP54-201ENST00000339859 PAX4O43316 350 aa7.85□□□□□ -1.15
USP54-201ENST00000339859 APOMO95445 188 aa7.85□□□□□ -1.15
USP54-201ENST00000339859 CPAMD8Q8IZJ3 1885 aa7.85□□□□□ -1.15
USP54-201ENST00000339859 GAGE12JA6NER3 117 aa7.85□□□□□ -1.15
USP54-201ENST00000339859 GAGE1Q13065 139 aa7.85□□□□□ -1.15
USP54-201ENST00000339859 GAGE4Q13068 117 aa7.85□□□□□ -1.15
USP54-201ENST00000339859 GAGE5Q13069 117 aa7.85□□□□□ -1.15
USP54-201ENST00000339859 GAGE13Q4V321 117 aa7.85□□□□□ -1.15
USP54-201ENST00000339859 SMR3AQ99954 134 aa7.85□□□□□ -1.15
USP54-201ENST00000339859 ZNF493Q6ZR52 646 aa7.85□□□□□ -1.15
USP54-201ENST00000339859 NOP10Q9NPE3 64 aaKnown RBP7.85□□□□□ -1.15
USP54-201ENST00000339859 TMEM242Q9NWH2 141 aa7.85□□□□□ -1.15
USP54-201ENST00000339859 HBDP02042 147 aa7.85□□□□□ -1.15
USP54-201ENST00000339859 DSCAMO60469 2012 aa7.85□□□□□ -1.15
USP54-201ENST00000339859 PRSS46E5RG02 174 aa7.85□□□□□ -1.15
USP54-201ENST00000339859 PLP1P60201 277 aa7.85□□□□□ -1.15
USP54-201ENST00000339859 LINC01559Q495D7 138 aa7.85□□□□□ -1.15
USP54-201ENST00000339859 LAMTOR2Q9Y2Q5 125 aa7.85□□□□□ -1.15
USP54-201ENST00000339859 DMRTA1Q5VZB9 504 aa7.84□□□□□ -1.15
USP54-201ENST00000339859 C5orf52A6NGY3 159 aa7.84□□□□□ -1.15
USP54-201ENST00000339859 BUB3O43684 328 aa7.84□□□□□ -1.15
USP54-201ENST00000339859 SEC11AP67812 179 aa7.84□□□□□ -1.15
USP54-201ENST00000339859 SRSF3P84103 164 aaKnown RBP7.84□□□□□ -1.15
USP54-201ENST00000339859 CT83Q5H943 113 aa7.84□□□□□ -1.15
USP54-201ENST00000339859 LINC01006Q8NI28 216 aa7.84□□□□□ -1.15
USP54-201ENST00000339859 CHCHD1Q96BP2 118 aaKnown RBP7.84□□□□□ -1.15
USP54-201ENST00000339859 RHOHQ15669 191 aa7.84□□□□□ -1.15
USP54-201ENST00000339859 LSM4Q9Y4Z0 139 aaKnown RBP7.84□□□□□ -1.15
USP54-201ENST00000339859 CACNA1DQ01668 2161 aa7.84□□□□□ -1.15
USP54-201ENST00000339859 SH2D6Q7Z4S9 175 aa7.84□□□□□ -1.15
USP54-201ENST00000339859 NUP35Q8NFH5 326 aa7.84□□□□□ -1.15
USP54-201ENST00000339859 OR11H2Q8NH07 326 aa7.84□□□□□ -1.15
USP54-201ENST00000339859 PHLDA1Q8WV24 401 aaPredicted RBP7.84□□□□□ -1.15
USP54-201ENST00000339859 IGF2BP2-AS1Q96M15 143 aa7.84□□□□□ -1.15
USP54-201ENST00000339859 PKDREJQ9NTG1 2253 aa7.84□□□□□ -1.16
USP54-201ENST00000339859 FAM231BA6NCW3 169 aa7.83□□□□□ -1.16
Retrieved 100 of 20,778 RNA–protein pairs in 67.9 ms