RNA–Protein interactions for RNA: ENST00000331433.4

CLCNKA-201, Transcript of chloride voltage-gated channel Ka, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene CLCNKA, Length 2,475 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLCNKA-201ENST00000331433 POLQO75417 2590 aa11.44□□□□□ -0.58
CLCNKA-201ENST00000331433 M0R143 59 aa11.44□□□□□ -0.58
CLCNKA-201ENST00000331433 LINC00469Q8N7U9 141 aa11.44□□□□□ -0.58
CLCNKA-201ENST00000331433 GATD1Q8NB37 220 aa11.44□□□□□ -0.58
CLCNKA-201ENST00000331433 ZNF462Q96JM2 2506 aa11.43□□□□□ -0.58
CLCNKA-201ENST00000331433 A0A1B0GW15 77 aa11.43□□□□□ -0.58
CLCNKA-201ENST00000331433 MSMBP08118 114 aa11.43□□□□□ -0.58
CLCNKA-201ENST00000331433 CHD6Q8TD26 2715 aa11.43□□□□□ -0.58
CLCNKA-201ENST00000331433 LRRK2Q5S007 2527 aa11.43□□□□□ -0.58
CLCNKA-201ENST00000331433 FBLL1A6NHQ2 334 aaKnown RBP11.43□□□□□ -0.58
CLCNKA-201ENST00000331433 TRBV12-3P01733 135 aa11.43□□□□□ -0.58
CLCNKA-201ENST00000331433 TRAV8-2A0A0B4J237 113 aa11.42□□□□□ -0.58
CLCNKA-201ENST00000331433 IL17RELQ6ZVW7 336 aa11.42□□□□□ -0.58
CLCNKA-201ENST00000331433 ZNF575Q86XF7 245 aa11.42□□□□□ -0.58
CLCNKA-201ENST00000331433 FAM223BA6NKX1 122 aa11.42□□□□□ -0.58
CLCNKA-201ENST00000331433 LEPROTL1O95214 131 aa11.42□□□□□ -0.58
CLCNKA-201ENST00000331433 AVPP01185 164 aa11.42□□□□□ -0.58
CLCNKA-201ENST00000331433 BMI1P35226 326 aa11.42□□□□□ -0.58
CLCNKA-201ENST00000331433 CRIP2P52943 208 aaPredicted RBP11.42□□□□□ -0.58
CLCNKA-201ENST00000331433 ZNF493Q6ZR52 646 aa11.42□□□□□ -0.58
CLCNKA-201ENST00000331433 FAM223AQ8IWN6 122 aa11.42□□□□□ -0.58
CLCNKA-201ENST00000331433 AMN1Q8IY45 258 aa11.42□□□□□ -0.58
CLCNKA-201ENST00000331433 SLC50A1Q9BRV3 221 aa11.42□□□□□ -0.58
CLCNKA-201ENST00000331433 TMEM70Q9BUB7 260 aa11.42□□□□□ -0.58
CLCNKA-201ENST00000331433 HIF1ANQ9NWT6 349 aa11.42□□□□□ -0.58
CLCNKA-201ENST00000331433 ORM1P02763 201 aa11.41□□□□□ -0.58
CLCNKA-201ENST00000331433 PRB1P04280 392 aa11.41□□□□□ -0.58
CLCNKA-201ENST00000331433 ARL3P36405 182 aa11.41□□□□□ -0.58
CLCNKA-201ENST00000331433 BLCAPP62952 87 aa11.41□□□□□ -0.58
CLCNKA-201ENST00000331433 Q6ZS46 218 aa11.41□□□□□ -0.58
CLCNKA-201ENST00000331433 C8orf86Q6ZUL3 223 aa11.41□□□□□ -0.58
CLCNKA-201ENST00000331433 TIMM8BQ9Y5J9 83 aaPredicted RBP11.41□□□□□ -0.58
CLCNKA-201ENST00000331433 U3KQE9 123 aa11.41□□□□□ -0.58
CLCNKA-201ENST00000331433 ZANQ9Y493 2812 aa11.41□□□□□ -0.58
CLCNKA-201ENST00000331433 D6R8Y8 96 aa11.41□□□□□ -0.58
CLCNKA-201ENST00000331433 UNQ9165/PRO28630Q6UXU0 137 aa11.41□□□□□ -0.58
CLCNKA-201ENST00000331433 FER1L6-AS1Q8NA97 138 aa11.41□□□□□ -0.58
CLCNKA-201ENST00000331433 ANKRD17O75179 2603 aaKnown RBP11.4□□□□□ -0.58
CLCNKA-201ENST00000331433 IGHV3-11P01762 117 aa11.4□□□□□ -0.58
CLCNKA-201ENST00000331433 IGF1P05019 195 aa11.4□□□□□ -0.58
CLCNKA-201ENST00000331433 IGLC3P0DOY3 106 aa11.4□□□□□ -0.58
CLCNKA-201ENST00000331433 LCNL1Q6ZST4 164 aa11.4□□□□□ -0.58
CLCNKA-201ENST00000331433 AGPAT4-IT1Q9H0P7 198 aa11.4□□□□□ -0.58
CLCNKA-201ENST00000331433 FBN2P35556 2912 aa11.4□□□□□ -0.59
CLCNKA-201ENST00000331433 A6NDX4 124 aa11.4□□□□□ -0.59
CLCNKA-201ENST00000331433 KLK15Q9H2R5 256 aa11.4□□□□□ -0.59
CLCNKA-201ENST00000331433 IGHG2P01859 326 aa11.39□□□□□ -0.59
CLCNKA-201ENST00000331433 IGLC6P0CF74 106 aa11.39□□□□□ -0.59
CLCNKA-201ENST00000331433 PPIFP30405 207 aaKnown RBP11.39□□□□□ -0.59
CLCNKA-201ENST00000331433 TWIST1Q15672 202 aa11.39□□□□□ -0.59
CLCNKA-201ENST00000331433 FAM104BQ5XKR9 115 aa11.39□□□□□ -0.59
CLCNKA-201ENST00000331433 RBAKDNA6NC62 111 aa11.38□□□□□ -0.59
CLCNKA-201ENST00000331433 FABP5P3A8MUU1 101 aa11.38□□□□□ -0.59
CLCNKA-201ENST00000331433 SYS1-DBNDD2H3BUS1 97 aa11.38□□□□□ -0.59
CLCNKA-201ENST00000331433 RPS20P60866 119 aaKnown RBP11.38□□□□□ -0.59
CLCNKA-201ENST00000331433 NUTF2P61970 127 aaKnown RBP11.38□□□□□ -0.59
CLCNKA-201ENST00000331433 AP5S1Q9NUS5 200 aa11.38□□□□□ -0.59
CLCNKA-201ENST00000331433 LOC389332A0A1B0GUA5 103 aa11.38□□□□□ -0.59
CLCNKA-201ENST00000331433 PRSS3P2Q8NHM4 247 aa11.38□□□□□ -0.59
CLCNKA-201ENST00000331433 PSMG3-AS1Q96PY0 264 aa11.38□□□□□ -0.59
CLCNKA-201ENST00000331433 MSRB1Q9NZV6 116 aa11.38□□□□□ -0.59
CLCNKA-201ENST00000331433 UQCR10Q9UDW1 63 aa11.38□□□□□ -0.59
CLCNKA-201ENST00000331433 TRAV9-2A0A087WT02 112 aa11.37□□□□□ -0.59
CLCNKA-201ENST00000331433 B4DSR2 109 aa11.37□□□□□ -0.59
CLCNKA-201ENST00000331433 SMAD7O15105 426 aaKnown RBP11.37□□□□□ -0.59
CLCNKA-201ENST00000331433 IFI27P40305 119 aaPredicted RBP11.37□□□□□ -0.59
CLCNKA-201ENST00000331433 BATFQ16520 125 aa11.37□□□□□ -0.59
CLCNKA-201ENST00000331433 FAM106AQ4KMX7 169 aa11.37□□□□□ -0.59
CLCNKA-201ENST00000331433 SPOCK3Q9BQ16 436 aa11.37□□□□□ -0.59
CLCNKA-201ENST00000331433 MCRIP2Q9BUT9 160 aaKnown RBP11.37□□□□□ -0.59
CLCNKA-201ENST00000331433 H0Y8G0 127 aa11.37□□□□□ -0.59
CLCNKA-201ENST00000331433 SMKR1H3BMG3 65 aa11.37□□□□□ -0.59
CLCNKA-201ENST00000331433 CRXO43186 299 aaPredicted RBP11.37□□□□□ -0.59
CLCNKA-201ENST00000331433 PF4V1P10720 104 aa11.37□□□□□ -0.59
CLCNKA-201ENST00000331433 MRPL51Q4U2R6 128 aaKnown RBP11.37□□□□□ -0.59
CLCNKA-201ENST00000331433 FA2HQ7L5A8 372 aa11.37□□□□□ -0.59
CLCNKA-201ENST00000331433 GLMPQ8WWB7 406 aa11.37□□□□□ -0.59
CLCNKA-201ENST00000331433 ATP6V0BQ99437 205 aa11.37□□□□□ -0.59
CLCNKA-201ENST00000331433 OR4C46A6NHA9 309 aa11.36□□□□□ -0.59
CLCNKA-201ENST00000331433 IGLL1P15814 213 aa11.36□□□□□ -0.59
CLCNKA-201ENST00000331433 TMEM78Q5T7P6 136 aa11.36□□□□□ -0.59
CLCNKA-201ENST00000331433 Q6ZN92 141 aa11.36□□□□□ -0.59
CLCNKA-201ENST00000331433 C16orf92Q96LL3 132 aa11.36□□□□□ -0.59
CLCNKA-201ENST00000331433 PRELID3AQ96N28 172 aa11.36□□□□□ -0.59
CLCNKA-201ENST00000331433 BBC3Q96PG8 261 aaPredicted RBP11.36□□□□□ -0.59
CLCNKA-201ENST00000331433 C11orf21Q9P2W6 132 aa11.36□□□□□ -0.59
CLCNKA-201ENST00000331433 OR5AL1P0C617 328 aa11.36□□□□□ -0.59
CLCNKA-201ENST00000331433 LOXL1Q08397 574 aaPredicted RBP11.36□□□□□ -0.59
CLCNKA-201ENST00000331433 Q6ZQT7 251 aa11.36□□□□□ -0.59
CLCNKA-201ENST00000331433 ORMDL3Q8N138 153 aa11.36□□□□□ -0.59
CLCNKA-201ENST00000331433 KLHDC1Q8N7A1 406 aa11.36□□□□□ -0.59
CLCNKA-201ENST00000331433 U3KQK5 164 aa11.36□□□□□ -0.59
CLCNKA-201ENST00000331433 PTPN13Q12923 2485 aa11.36□□□□□ -0.59
CLCNKA-201ENST00000331433 NCR2O95944 276 aa11.35□□□□□ -0.59
CLCNKA-201ENST00000331433 LINC01559Q495D7 138 aa11.35□□□□□ -0.59
CLCNKA-201ENST00000331433 C20orf173Q96LM9 149 aa11.35□□□□□ -0.59
CLCNKA-201ENST00000331433 SIGLEC8Q9NYZ4 499 aa11.35□□□□□ -0.59
CLCNKA-201ENST00000331433 IGKV3D-20A0A0C4DH25 116 aa11.35□□□□□ -0.59
CLCNKA-201ENST00000331433 SRSF2Q01130 221 aaKnown RBP11.35□□□□□ -0.59
CLCNKA-201ENST00000331433 TMEM95Q3KNT9 176 aa11.35□□□□□ -0.59
Retrieved 100 of 20,778 RNA–protein pairs in 50.7 ms