RNA–Protein interactions for RNA: ENST00000314759.5

SKA3-202, Transcript of spindle and kinetochore associated complex subunit 3, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene SKA3, Length 2,919 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SKA3-202ENST00000314759 VGLL1Q99990 258 aa10.48□□□□□ -0.73
SKA3-202ENST00000314759 MSRB1Q9NZV6 116 aa10.48□□□□□ -0.73
SKA3-202ENST00000314759 SMIM17P0DL12 118 aa10.47□□□□□ -0.73
SKA3-202ENST00000314759 IGFL4Q6B9Z1 124 aa10.47□□□□□ -0.73
SKA3-202ENST00000314759 ARHGAP32A7KAX9 2087 aa10.47□□□□□ -0.73
SKA3-202ENST00000314759 IGLV11-55A0A075B6I3 123 aa10.47□□□□□ -0.73
SKA3-202ENST00000314759 IGLC6P0CF74 106 aa10.47□□□□□ -0.73
SKA3-202ENST00000314759 MFAP4P55083 255 aa10.47□□□□□ -0.73
SKA3-202ENST00000314759 S100A7AQ86SG5 101 aa10.47□□□□□ -0.73
SKA3-202ENST00000314759 CFHR4Q92496 578 aa10.47□□□□□ -0.73
SKA3-202ENST00000314759 B9A039 149 aa10.47□□□□□ -0.73
SKA3-202ENST00000314759 DCHS2Q6V1P9 2916 aa10.46□□□□□ -0.73
SKA3-202ENST00000314759 NDUFA3O95167 84 aa10.46□□□□□ -0.73
SKA3-202ENST00000314759 IGHV3-23P01764 117 aa10.46□□□□□ -0.73
SKA3-202ENST00000314759 IGHG4P01861 327 aa10.46□□□□□ -0.73
SKA3-202ENST00000314759 NPBQ8NG41 125 aa10.46□□□□□ -0.73
SKA3-202ENST00000314759 RNF185Q96GF1 192 aa10.46□□□□□ -0.73
SKA3-202ENST00000314759 HHLA3Q9XRX5 114 aa10.46□□□□□ -0.73
SKA3-202ENST00000314759 HLA-DMBP28068 263 aa10.46□□□□□ -0.74
SKA3-202ENST00000314759 WFDC2Q14508 124 aa10.46□□□□□ -0.74
SKA3-202ENST00000314759 PHLDA1Q8WV24 401 aaPredicted RBP10.46□□□□□ -0.74
SKA3-202ENST00000314759 DPM3Q9P2X0 92 aa10.46□□□□□ -0.74
SKA3-202ENST00000314759 TSSC4Q9Y5U2 329 aaPredicted RBP10.46□□□□□ -0.74
SKA3-202ENST00000314759 SMAD5-AS1Q9Y6J3 95 aa10.46□□□□□ -0.74
SKA3-202ENST00000314759 RPL7P18124 248 aaKnown RBP10.45□□□□□ -0.74
SKA3-202ENST00000314759 PSMG3-AS1Q96PY0 264 aa10.45□□□□□ -0.74
SKA3-202ENST00000314759 CEACAM3P40198 252 aa10.45□□□□□ -0.74
SKA3-202ENST00000314759 LRBAP50851 2863 aa10.45□□□□□ -0.74
SKA3-202ENST00000314759 C5orf64Q2M2E5 130 aa10.45□□□□□ -0.74
SKA3-202ENST00000314759 ZNF562Q6V9R5 426 aa10.45□□□□□ -0.74
SKA3-202ENST00000314759 ZNF48Q96MX3 618 aaPredicted RBP10.45□□□□□ -0.74
SKA3-202ENST00000314759 CHAC1Q9BUX1 264 aa10.45□□□□□ -0.74
SKA3-202ENST00000314759 C21orf62Q9NYP8 219 aa10.45□□□□□ -0.74
SKA3-202ENST00000314759 WNK2Q9Y3S1 2297 aa10.45□□□□□ -0.74
SKA3-202ENST00000314759 MBD3L2BA0A1B0GVZ6 204 aaPredicted RBP10.44□□□□□ -0.74
SKA3-202ENST00000314759 BMI1P35226 326 aa10.44□□□□□ -0.74
SKA3-202ENST00000314759 NDPQ00604 133 aa10.44□□□□□ -0.74
SKA3-202ENST00000314759 SIGMAR1Q99720 223 aa10.44□□□□□ -0.74
SKA3-202ENST00000314759 NHP2Q9NX24 153 aaKnown RBP10.44□□□□□ -0.74
SKA3-202ENST00000314759 ABCA4P78363 2273 aa10.44□□□□□ -0.74
SKA3-202ENST00000314759 HES1Q14469 280 aa10.44□□□□□ -0.74
SKA3-202ENST00000314759 GTSCR1Q86UQ5 136 aa10.44□□□□□ -0.74
SKA3-202ENST00000314759 ORM1P02763 201 aa10.44□□□□□ -0.74
SKA3-202ENST00000314759 LEPP41159 167 aa10.44□□□□□ -0.74
SKA3-202ENST00000314759 ODF1Q14990 250 aa10.44□□□□□ -0.74
SKA3-202ENST00000314759 Q8NA96 180 aa10.44□□□□□ -0.74
SKA3-202ENST00000314759 LY6G5BQ8NDX9 201 aa10.44□□□□□ -0.74
SKA3-202ENST00000314759 MAP1LC3AQ9H492 121 aa10.44□□□□□ -0.74
SKA3-202ENST00000314759 LINC01546A6NGU7 62 aa10.43□□□□□ -0.74
SKA3-202ENST00000314759 CD3EP07766 207 aa10.43□□□□□ -0.74
SKA3-202ENST00000314759 KLRD1Q13241 179 aa10.43□□□□□ -0.74
SKA3-202ENST00000314759 SH2D6Q7Z4S9 175 aa10.43□□□□□ -0.74
SKA3-202ENST00000314759 OR11H6Q8NGC7 330 aa10.43□□□□□ -0.74
SKA3-202ENST00000314759 SVEP1Q4LDE5 3571 aa10.43□□□□□ -0.74
SKA3-202ENST00000314759 TRBV25-1A0A075B6N4 114 aa10.43□□□□□ -0.74
SKA3-202ENST00000314759 IGHV3OR16-8A0A075B7F1 116 aa10.43□□□□□ -0.74
SKA3-202ENST00000314759 BORCS8-MEF2BH3BNR1 382 aaPredicted RBP10.43□□□□□ -0.74
SKA3-202ENST00000314759 MTURNQ8N3F0 131 aa10.43□□□□□ -0.74
SKA3-202ENST00000314759 PIFOQ8TCI5 191 aa10.43□□□□□ -0.74
SKA3-202ENST00000314759 CLUHP3Q96NS8 147 aa10.43□□□□□ -0.74
SKA3-202ENST00000314759 CNFNQ9BYD5 112 aa10.43□□□□□ -0.74
SKA3-202ENST00000314759 ZMAT4Q9H898 229 aa10.43□□□□□ -0.74
SKA3-202ENST00000314759 SPANXB1Q9NS25 103 aaPredicted RBP10.43□□□□□ -0.74
SKA3-202ENST00000314759 RIF1Q5UIP0 2472 aaKnown RBP10.43□□□□□ -0.74
SKA3-202ENST00000314759 GAGE12HA6NDE8 117 aa10.42□□□□□ -0.74
SKA3-202ENST00000314759 CTSGP08311 255 aa10.42□□□□□ -0.74
SKA3-202ENST00000314759 EVI2AP22794 236 aa10.42□□□□□ -0.74
SKA3-202ENST00000314759 TTC9CQ8N5M4 171 aa10.42□□□□□ -0.74
SKA3-202ENST00000314759 ARPC1AQ92747 370 aa10.42□□□□□ -0.74
SKA3-202ENST00000314759 RELNP78509 3460 aa10.42□□□□□ -0.74
SKA3-202ENST00000314759 TNFRSF6BO95407 300 aa10.42□□□□□ -0.74
SKA3-202ENST00000314759 GATA1P15976 413 aaPredicted RBP10.42□□□□□ -0.74
SKA3-202ENST00000314759 FCER1GP30273 86 aa10.42□□□□□ -0.74
SKA3-202ENST00000314759 ZNF672Q499Z4 452 aaPredicted RBP10.42□□□□□ -0.74
SKA3-202ENST00000314759 ZNF292O60281 2723 aa10.42□□□□□ -0.74
SKA3-202ENST00000314759 LY6HO94772 140 aa10.41□□□□□ -0.74
SKA3-202ENST00000314759 PRSS1P07477 247 aa10.41□□□□□ -0.74
SKA3-202ENST00000314759 ERCC8Q13216 396 aa10.41□□□□□ -0.74
SKA3-202ENST00000314759 AMTNQ6UX39 209 aa10.41□□□□□ -0.74
SKA3-202ENST00000314759 IGHV3-35A0A0C4DH35 117 aa10.41□□□□□ -0.74
SKA3-202ENST00000314759 FABP5P3A8MUU1 101 aa10.41□□□□□ -0.74
SKA3-202ENST00000314759 H3BMG7 143 aa10.41□□□□□ -0.74
SKA3-202ENST00000314759 PPIFP30405 207 aaKnown RBP10.41□□□□□ -0.74
SKA3-202ENST00000314759 SRSF2Q01130 221 aaKnown RBP10.41□□□□□ -0.74
SKA3-202ENST00000314759 CD300EQ496F6 205 aaPredicted RBP10.41□□□□□ -0.74
SKA3-202ENST00000314759 PRR30Q53SZ7 412 aaPredicted RBP10.41□□□□□ -0.74
SKA3-202ENST00000314759 DYNAPQ8N1N2 210 aa10.41□□□□□ -0.74
SKA3-202ENST00000314759 HIGD1BQ9P298 99 aa10.41□□□□□ -0.74
SKA3-202ENST00000314759 AGRNO00468 2067 aa10.41□□□□□ -0.74
SKA3-202ENST00000314759 NCBP2LA6PVI3 153 aaKnown RBP10.4□□□□□ -0.74
SKA3-202ENST00000314759 PRAC2D3DTV9 90 aa10.4□□□□□ -0.74
SKA3-202ENST00000314759 MAPKAPK5-AS1Q8N8E1 139 aa10.4□□□□□ -0.74
SKA3-202ENST00000314759 LINC01560Q8TB33 94 aa10.4□□□□□ -0.74
SKA3-202ENST00000314759 ETDBQ3ZM63 59 aa10.4□□□□□ -0.74
SKA3-202ENST00000314759 CEND1Q8N111 149 aa10.4□□□□□ -0.74
SKA3-202ENST00000314759 SPAG8Q99932 426 aaPredicted RBP10.4□□□□□ -0.74
SKA3-202ENST00000314759 NXT2Q9NPJ8 142 aaKnown RBP10.4□□□□□ -0.74
SKA3-202ENST00000314759 IGLL5B9A064 214 aa10.4□□□□□ -0.75
SKA3-202ENST00000314759 E9PLD3 99 aa10.4□□□□□ -0.75
SKA3-202ENST00000314759 ZC2HC1BQ5TFG8 222 aa10.4□□□□□ -0.75
Retrieved 100 of 20,778 RNA–protein pairs in 57.6 ms