RNA–Protein interactions for RNA: ENST00000267996.11

TPM1-201, Transcript of tropomyosin 1, humanhuman

TSL 1 (best) BASIC

Gene TPM1, Length 1,670 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TPM1-201ENST00000267996 CITED2Q99967 270 aaPredicted RBP12.35□□□□□ -0.43
TPM1-201ENST00000267996 PPP1R14DQ9NXH3 145 aa12.35□□□□□ -0.43
TPM1-201ENST00000267996 CRIP1P50238 77 aa12.35□□□□□ -0.43
TPM1-201ENST00000267996 HIST2H2BDQ6DRA6 164 aa12.35□□□□□ -0.43
TPM1-201ENST00000267996 C9orf47Q6ZRZ4 202 aa12.35□□□□□ -0.43
TPM1-201ENST00000267996 RAX2Q96IS3 184 aa12.35□□□□□ -0.43
TPM1-201ENST00000267996 C8orf49Q96NF6 230 aa12.35□□□□□ -0.43
TPM1-201ENST00000267996 DUX3Q96PT4 197 aa12.35□□□□□ -0.43
TPM1-201ENST00000267996 AGPAT4-IT1Q9H0P7 198 aa12.35□□□□□ -0.43
TPM1-201ENST00000267996 SETD2Q9BYW2 2564 aaPredicted RBP12.34□□□□□ -0.43
TPM1-201ENST00000267996 P01737 135 aa12.34□□□□□ -0.43
TPM1-201ENST00000267996 ERCC8Q13216 396 aa12.34□□□□□ -0.43
TPM1-201ENST00000267996 C11orf44Q8N8P7 122 aa12.34□□□□□ -0.43
TPM1-201ENST00000267996 OR4B1Q8NGF8 309 aa12.34□□□□□ -0.43
TPM1-201ENST00000267996 OR9G4Q8NGQ1 327 aa12.34□□□□□ -0.43
TPM1-201ENST00000267996 Q8TAT8 98 aa12.34□□□□□ -0.43
TPM1-201ENST00000267996 DLX4Q92988 240 aaPredicted RBP12.34□□□□□ -0.43
TPM1-201ENST00000267996 RPP21Q9H633 154 aaKnown RBP12.34□□□□□ -0.43
TPM1-201ENST00000267996 PEMTQ9UBM1 199 aa12.34□□□□□ -0.43
TPM1-201ENST00000267996 SETXQ7Z333 2677 aaKnown RBP12.34□□□□□ -0.43
TPM1-201ENST00000267996 F8P00451 2351 aa12.33□□□□□ -0.44
TPM1-201ENST00000267996 HAX1O00165 279 aa12.33□□□□□ -0.44
TPM1-201ENST00000267996 OVOL1O14753 267 aa12.33□□□□□ -0.44
TPM1-201ENST00000267996 CA1P00915 261 aaPredicted RBP12.33□□□□□ -0.44
TPM1-201ENST00000267996 RAB5BP61020 215 aa12.33□□□□□ -0.44
TPM1-201ENST00000267996 ZNF738Q8NE65 137 aa12.33□□□□□ -0.44
TPM1-201ENST00000267996 TSKUQ8WUA8 353 aa12.33□□□□□ -0.44
TPM1-201ENST00000267996 DAZAP1Q96EP5 407 aaKnown RBP12.33□□□□□ -0.44
TPM1-201ENST00000267996 GPR61Q9BZJ8 451 aa12.33□□□□□ -0.44
TPM1-201ENST00000267996 MS4A6AQ9H2W1 248 aa12.33□□□□□ -0.44
TPM1-201ENST00000267996 BAHCC1Q9P281 2608 aa12.33□□□□□ -0.44
TPM1-201ENST00000267996 IGKV3-7A0A075B6H7 116 aa12.32□□□□□ -0.44
TPM1-201ENST00000267996 M0QZ24 198 aa12.32□□□□□ -0.44
TPM1-201ENST00000267996 PHOX2AO14813 284 aa12.32□□□□□ -0.44
TPM1-201ENST00000267996 ZNF138P52744 262 aa12.32□□□□□ -0.44
TPM1-201ENST00000267996 SELENOKQ9Y6D0 94 aa12.32□□□□□ -0.44
TPM1-201ENST00000267996 K7EQG2 157 aa12.32□□□□□ -0.44
TPM1-201ENST00000267996 CCL24O00175 119 aa12.32□□□□□ -0.44
TPM1-201ENST00000267996 CT45A10P0DMU9 189 aa12.32□□□□□ -0.44
TPM1-201ENST00000267996 ID1P41134 155 aa12.32□□□□□ -0.44
TPM1-201ENST00000267996 NDFIP1Q9BT67 221 aa12.32□□□□□ -0.44
TPM1-201ENST00000267996 A8MWL6 223 aa12.31□□□□□ -0.44
TPM1-201ENST00000267996 TRGC2P03986 189 aa12.31□□□□□ -0.44
TPM1-201ENST00000267996 CSN3P07498 182 aa12.31□□□□□ -0.44
TPM1-201ENST00000267996 TMEM78Q5T7P6 136 aa12.31□□□□□ -0.44
TPM1-201ENST00000267996 C2CD3Q4AC94 2353 aa12.31□□□□□ -0.44
TPM1-201ENST00000267996 A0A1W2PRX2 142 aa12.3□□□□□ -0.44
TPM1-201ENST00000267996 FAM231BA6NCW3 169 aa12.3□□□□□ -0.44
TPM1-201ENST00000267996 IZUMO1RA6ND01 250 aa12.3□□□□□ -0.44
TPM1-201ENST00000267996 ADARB2-AS1A8MUL3 147 aa12.3□□□□□ -0.44
TPM1-201ENST00000267996 TCL1AP56279 114 aa12.3□□□□□ -0.44
TPM1-201ENST00000267996 SMUG1Q53HV7 270 aa12.3□□□□□ -0.44
TPM1-201ENST00000267996 ZFP82Q8N141 532 aa12.3□□□□□ -0.44
TPM1-201ENST00000267996 LINC00477Q96M19 166 aa12.3□□□□□ -0.44
TPM1-201ENST00000267996 GFRA4Q9GZZ7 299 aa12.3□□□□□ -0.44
TPM1-201ENST00000267996 LENEPQ9Y5L5 61 aa12.3□□□□□ -0.44
TPM1-201ENST00000267996 ZNF80P51504 273 aaPredicted RBP12.29□□□□□ -0.44
TPM1-201ENST00000267996 FAM162BQ5T6X4 162 aa12.29□□□□□ -0.44
TPM1-201ENST00000267996 OR8A1Q8NGG7 326 aa12.29□□□□□ -0.44
TPM1-201ENST00000267996 NEU1Q99519 415 aa12.29□□□□□ -0.44
TPM1-201ENST00000267996 NAT8BQ9UHF3 227 aa12.29□□□□□ -0.44
TPM1-201ENST00000267996 LOC105371267A0A1B0GV96 52 aa12.29□□□□□ -0.44
TPM1-201ENST00000267996 SH2D1AO60880 128 aa12.29□□□□□ -0.44
TPM1-201ENST00000267996 SRSF2Q01130 221 aaKnown RBP12.29□□□□□ -0.44
TPM1-201ENST00000267996 NUP35Q8NFH5 326 aa12.29□□□□□ -0.44
TPM1-201ENST00000267996 OR2D3Q8NGH3 330 aa12.29□□□□□ -0.44
TPM1-201ENST00000267996 OR10J6PQ8NGY7 276 aa12.29□□□□□ -0.44
TPM1-201ENST00000267996 GTSF1Q8WW33 167 aa12.29□□□□□ -0.44
TPM1-201ENST00000267996 TRAV2A0A0B4J234 112 aa12.28□□□□□ -0.44
TPM1-201ENST00000267996 A0A1B0GUS0 222 aa12.28□□□□□ -0.44
TPM1-201ENST00000267996 FOXA3P55318 350 aaPredicted RBP12.28□□□□□ -0.44
TPM1-201ENST00000267996 KRTAP10-3P60369 221 aa12.28□□□□□ -0.44
TPM1-201ENST00000267996 RPL19P84098 196 aaKnown RBP12.28□□□□□ -0.44
TPM1-201ENST00000267996 ACTL10Q5JWF8 245 aa12.28□□□□□ -0.44
TPM1-201ENST00000267996 WFDC3Q8IUB2 231 aa12.28□□□□□ -0.44
TPM1-201ENST00000267996 HIGD1CA8MV81 97 aa12.27□□□□□ -0.45
TPM1-201ENST00000267996 ZNF705DP0CH99 300 aaPredicted RBP12.27□□□□□ -0.45
TPM1-201ENST00000267996 ZNF705BP0CI00 300 aaPredicted RBP12.27□□□□□ -0.45
TPM1-201ENST00000267996 DEFB1P60022 68 aa12.27□□□□□ -0.45
TPM1-201ENST00000267996 FAM19A4Q96LR4 140 aa12.27□□□□□ -0.45
TPM1-201ENST00000267996 SIGLEC8Q9NYZ4 499 aa12.27□□□□□ -0.45
TPM1-201ENST00000267996 TRBV7-9A0A0J9YWB2 115 aa12.26□□□□□ -0.45
TPM1-201ENST00000267996 PAFAH1B2P68402 229 aa12.26□□□□□ -0.45
TPM1-201ENST00000267996 COX19Q49B96 90 aa12.26□□□□□ -0.45
TPM1-201ENST00000267996 FRZBQ92765 325 aa12.26□□□□□ -0.45
TPM1-201ENST00000267996 FABP5P3A8MUU1 101 aa12.26□□□□□ -0.45
TPM1-201ENST00000267996 F6UB75 175 aa12.26□□□□□ -0.45
TPM1-201ENST00000267996 FRMD6-AS1P0C7T7 363 aa12.26□□□□□ -0.45
TPM1-201ENST00000267996 TFPI2P48307 235 aa12.26□□□□□ -0.45
TPM1-201ENST00000267996 SNRPD3P62318 126 aaKnown RBP12.26□□□□□ -0.45
TPM1-201ENST00000267996 DEFB114Q30KQ6 69 aa12.26□□□□□ -0.45
TPM1-201ENST00000267996 RASL11AQ6T310 242 aa12.26□□□□□ -0.45
TPM1-201ENST00000267996 HIST1H2BKO60814 126 aa12.25□□□□□ -0.45
TPM1-201ENST00000267996 HIST1H2BJP06899 126 aa12.25□□□□□ -0.45
TPM1-201ENST00000267996 ZNF688P0C7X2 276 aa12.25□□□□□ -0.45
TPM1-201ENST00000267996 HIST1H2BOP23527 126 aa12.25□□□□□ -0.45
TPM1-201ENST00000267996 HIST1H2BBP33778 126 aa12.25□□□□□ -0.45
TPM1-201ENST00000267996 HIST1H2BDP58876 126 aa12.25□□□□□ -0.45
TPM1-201ENST00000267996 HIST1H2BCP62807 126 aa12.25□□□□□ -0.45
TPM1-201ENST00000267996 HIST1H1AQ02539 215 aaPredicted RBP12.25□□□□□ -0.45
Retrieved 100 of 20,778 RNA–protein pairs in 78.5 ms