RNA–Protein interactions for RNA: ENST00000237186.10

UBE3D-201, Transcript of ubiquitin protein ligase E3D, humanhuman

TSL 1 (best)

Gene UBE3D, Length 1,879 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UBE3D-201ENST00000237186 PRAC2D3DTV9 90 aa12.44□□□□□ -0.42
UBE3D-201ENST00000237186 MSMBP08118 114 aa12.44□□□□□ -0.42
UBE3D-201ENST00000237186 IGLC3P0DOY3 106 aa12.44□□□□□ -0.42
UBE3D-201ENST00000237186 PPIFP30405 207 aaKnown RBP12.44□□□□□ -0.42
UBE3D-201ENST00000237186 FAM104BQ5XKR9 115 aa12.44□□□□□ -0.42
UBE3D-201ENST00000237186 TPPP3Q9BW30 176 aa12.44□□□□□ -0.42
UBE3D-201ENST00000237186 CNFNQ9BYD5 112 aa12.44□□□□□ -0.42
UBE3D-201ENST00000237186 HIF1ANQ9NWT6 349 aa12.44□□□□□ -0.42
UBE3D-201ENST00000237186 PPP1R14DQ9NXH3 145 aa12.44□□□□□ -0.42
UBE3D-201ENST00000237186 CLEC5AQ9NY25 188 aa12.44□□□□□ -0.42
UBE3D-201ENST00000237186 TRAV8-2A0A0B4J237 113 aa12.43□□□□□ -0.42
UBE3D-201ENST00000237186 LEPROTL1O95214 131 aa12.43□□□□□ -0.42
UBE3D-201ENST00000237186 UQCR10Q9UDW1 63 aa12.43□□□□□ -0.42
UBE3D-201ENST00000237186 TRAV9-2A0A087WT02 112 aa12.42□□□□□ -0.42
UBE3D-201ENST00000237186 TMSB15BA0A087X1C1 80 aa12.42□□□□□ -0.42
UBE3D-201ENST00000237186 TRGV3P03979 118 aa12.42□□□□□ -0.42
UBE3D-201ENST00000237186 NUTF2P61970 127 aaKnown RBP12.42□□□□□ -0.42
UBE3D-201ENST00000237186 USMG5Q96IX5 58 aa12.42□□□□□ -0.42
UBE3D-201ENST00000237186 ABCA2Q9BZC7 2435 aa12.42□□□□□ -0.42
UBE3D-201ENST00000237186 SYS1-DBNDD2H3BUS1 97 aa12.42□□□□□ -0.42
UBE3D-201ENST00000237186 DSCR9P59020 149 aa12.42□□□□□ -0.42
UBE3D-201ENST00000237186 LINC01559Q495D7 138 aa12.42□□□□□ -0.42
UBE3D-201ENST00000237186 FER1L6-AS1Q8NA97 138 aa12.42□□□□□ -0.42
UBE3D-201ENST00000237186 IGHV3-66A0A0C4DH42 116 aa12.41□□□□□ -0.42
UBE3D-201ENST00000237186 TMEM213A2RRL7 107 aa12.41□□□□□ -0.42
UBE3D-201ENST00000237186 ERCC8Q13216 396 aa12.41□□□□□ -0.42
UBE3D-201ENST00000237186 C8orf86Q6ZUL3 223 aa12.41□□□□□ -0.42
UBE3D-201ENST00000237186 B4DSR2 109 aa12.4□□□□□ -0.42
UBE3D-201ENST00000237186 GATA3P23771 443 aa12.4□□□□□ -0.42
UBE3D-201ENST00000237186 ZNF138P52744 262 aa12.4□□□□□ -0.42
UBE3D-201ENST00000237186 SSTP61278 116 aa12.4□□□□□ -0.42
UBE3D-201ENST00000237186 SPATA12Q7Z6I5 190 aa12.4□□□□□ -0.42
UBE3D-201ENST00000237186 RNF182Q8N6D2 247 aa12.4□□□□□ -0.42
UBE3D-201ENST00000237186 GLMPQ8WWB7 406 aa12.4□□□□□ -0.42
UBE3D-201ENST00000237186 AGPAT4-IT1Q9H0P7 198 aa12.4□□□□□ -0.42
UBE3D-201ENST00000237186 AP5S1Q9NUS5 200 aa12.4□□□□□ -0.42
UBE3D-201ENST00000237186 LINC00527Q9UJ94 153 aa12.4□□□□□ -0.42
UBE3D-201ENST00000237186 VPS13CQ709C8 3753 aa12.4□□□□□ -0.42
UBE3D-201ENST00000237186 NDUFA4O00483 81 aa12.4□□□□□ -0.42
UBE3D-201ENST00000237186 ARL3P36405 182 aa12.4□□□□□ -0.42
UBE3D-201ENST00000237186 SRSF1Q07955 248 aaKnown RBP eCLIP12.4□□□□□ -0.42
UBE3D-201ENST00000237186 PET117Q6UWS5 81 aa12.4□□□□□ -0.42
UBE3D-201ENST00000237186 C9orf47Q6ZRZ4 202 aa12.4□□□□□ -0.42
UBE3D-201ENST00000237186 HSPB8Q9UJY1 196 aa12.4□□□□□ -0.42
UBE3D-201ENST00000237186 IGHV3OR16-13A0A075B7E8 117 aa12.39□□□□□ -0.43
UBE3D-201ENST00000237186 IGHV3-74A0A0B4J1X5 117 aa12.39□□□□□ -0.43
UBE3D-201ENST00000237186 H3BUX3 64 aa12.39□□□□□ -0.43
UBE3D-201ENST00000237186 HIST1H1AQ02539 215 aaPredicted RBP12.39□□□□□ -0.43
UBE3D-201ENST00000237186 LINC00173Q6ZV60 143 aa12.39□□□□□ -0.43
UBE3D-201ENST00000237186 ORMDL3Q8N138 153 aa12.39□□□□□ -0.43
UBE3D-201ENST00000237186 TMEM191AQ9H0A3 160 aa12.39□□□□□ -0.43
UBE3D-201ENST00000237186 ORM1P02763 201 aa12.38□□□□□ -0.43
UBE3D-201ENST00000237186 LY6EQ16553 131 aa12.38□□□□□ -0.43
UBE3D-201ENST00000237186 MRPL51Q4U2R6 128 aaKnown RBP12.38□□□□□ -0.43
UBE3D-201ENST00000237186 AMN1Q8IY45 258 aa12.38□□□□□ -0.43
UBE3D-201ENST00000237186 ATOH7Q8N100 152 aa12.38□□□□□ -0.43
UBE3D-201ENST00000237186 MAP1LC3CQ9BXW4 147 aa12.38□□□□□ -0.43
UBE3D-201ENST00000237186 ZNF580Q9UK33 172 aa12.38□□□□□ -0.43
UBE3D-201ENST00000237186 D6R8Y8 96 aa12.38□□□□□ -0.43
UBE3D-201ENST00000237186 ZNF207O43670 478 aaKnown RBP12.38□□□□□ -0.43
UBE3D-201ENST00000237186 CSN3P07498 182 aa12.38□□□□□ -0.43
UBE3D-201ENST00000237186 IL17RELQ6ZVW7 336 aa12.38□□□□□ -0.43
UBE3D-201ENST00000237186 PRSS3P2Q8NHM4 247 aa12.38□□□□□ -0.43
UBE3D-201ENST00000237186 PRELID3AQ96N28 172 aa12.38□□□□□ -0.43
UBE3D-201ENST00000237186 IGLL1P15814 213 aa12.37□□□□□ -0.43
UBE3D-201ENST00000237186 TWIST1Q15672 202 aa12.37□□□□□ -0.43
UBE3D-201ENST00000237186 MAJINQ3KP22 176 aa12.37□□□□□ -0.43
UBE3D-201ENST00000237186 TMEM78Q5T7P6 136 aa12.37□□□□□ -0.43
UBE3D-201ENST00000237186 C9orf139Q6ZV77 190 aa12.37□□□□□ -0.43
UBE3D-201ENST00000237186 FA2HQ7L5A8 372 aa12.37□□□□□ -0.43
UBE3D-201ENST00000237186 LENEPQ9Y5L5 61 aa12.37□□□□□ -0.43
UBE3D-201ENST00000237186 UBR5O95071 2799 aaPredicted RBP12.36□□□□□ -0.43
UBE3D-201ENST00000237186 IGHV3-49A0A0A0MS15 119 aa12.36□□□□□ -0.43
UBE3D-201ENST00000237186 OR4C46A6NHA9 309 aa12.36□□□□□ -0.43
UBE3D-201ENST00000237186 IGLV1-40P01703 118 aa12.36□□□□□ -0.43
UBE3D-201ENST00000237186 OR10AG1Q8NH19 301 aa12.36□□□□□ -0.43
UBE3D-201ENST00000237186 IGKV3D-20A0A0C4DH25 116 aa12.36□□□□□ -0.43
UBE3D-201ENST00000237186 A1L4Q6 167 aa12.36□□□□□ -0.43
UBE3D-201ENST00000237186 AVPP01185 164 aa12.36□□□□□ -0.43
UBE3D-201ENST00000237186 TRBV12-3P01733 135 aa12.36□□□□□ -0.43
UBE3D-201ENST00000237186 COX6B1P14854 86 aa12.36□□□□□ -0.43
UBE3D-201ENST00000237186 SLC25A16P16260 332 aa12.36□□□□□ -0.43
UBE3D-201ENST00000237186 BLCAPP62952 87 aa12.36□□□□□ -0.43
UBE3D-201ENST00000237186 UNQ9165/PRO28630Q6UXU0 137 aa12.36□□□□□ -0.43
UBE3D-201ENST00000237186 ZNF747Q9BV97 191 aa12.36□□□□□ -0.43
UBE3D-201ENST00000237186 SIGLEC8Q9NYZ4 499 aa12.36□□□□□ -0.43
UBE3D-201ENST00000237186 IFI27P40305 119 aaPredicted RBP12.35□□□□□ -0.43
UBE3D-201ENST00000237186 CFHR3Q02985 330 aa12.35□□□□□ -0.43
UBE3D-201ENST00000237186 Q6ZN92 141 aa12.35□□□□□ -0.43
UBE3D-201ENST00000237186 C16orf92Q96LL3 132 aa12.35□□□□□ -0.43
UBE3D-201ENST00000237186 ST20Q9HBF5 79 aa12.35□□□□□ -0.43
UBE3D-201ENST00000237186 MRPS16Q9Y3D3 137 aaKnown RBP12.35□□□□□ -0.43
UBE3D-201ENST00000237186 A0A0G2JLM5 398 aa12.34□□□□□ -0.43
UBE3D-201ENST00000237186 SMAD7O15105 426 aaKnown RBP12.34□□□□□ -0.43
UBE3D-201ENST00000237186 PPBPP02775 128 aa12.34□□□□□ -0.43
UBE3D-201ENST00000237186 RNF185Q96GF1 192 aa12.34□□□□□ -0.43
UBE3D-201ENST00000237186 KLK15Q9H2R5 256 aa12.34□□□□□ -0.43
UBE3D-201ENST00000237186 C11orf21Q9P2W6 132 aa12.34□□□□□ -0.43
UBE3D-201ENST00000237186 FAM208BQ5VWN6 2430 aa12.34□□□□□ -0.43
UBE3D-201ENST00000237186 TSPOP30536 169 aa12.34□□□□□ -0.43
Retrieved 100 of 20,778 RNA–protein pairs in 52.6 ms