RNA–Protein interactions for RNA: ENST00000225696.8

NUP88-201, Transcript of nucleoporin 88, humanhuman

TSL 5

Gene NUP88, Length 2,194 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP88-201ENST00000225696 NBR2O15453 112 aa9.65□□□□□ -0.86
NUP88-201ENST00000225696 HSD52Q0P140 79 aa9.65□□□□□ -0.86
NUP88-201ENST00000225696 SMIM15Q7Z3B0 74 aa9.65□□□□□ -0.86
NUP88-201ENST00000225696 CFHR4Q92496 578 aa9.65□□□□□ -0.86
NUP88-201ENST00000225696 VPS13CQ709C8 3753 aa9.65□□□□□ -0.87
NUP88-201ENST00000225696 PRAC2D3DTV9 90 aa9.64□□□□□ -0.87
NUP88-201ENST00000225696 IGLC6P0CF74 106 aa9.64□□□□□ -0.87
NUP88-201ENST00000225696 ERCC8Q13216 396 aa9.64□□□□□ -0.87
NUP88-201ENST00000225696 Q8NA96 180 aa9.64□□□□□ -0.87
NUP88-201ENST00000225696 OR2K2Q8NGT1 345 aa9.64□□□□□ -0.87
NUP88-201ENST00000225696 AP1S3Q96PC3 154 aa9.64□□□□□ -0.87
NUP88-201ENST00000225696 HHLA3Q9XRX5 114 aa9.64□□□□□ -0.87
NUP88-201ENST00000225696 IGLV11-55A0A075B6I3 123 aa9.64□□□□□ -0.87
NUP88-201ENST00000225696 K7ERJ3 54 aa9.64□□□□□ -0.87
NUP88-201ENST00000225696 FXYD2P54710 66 aa9.64□□□□□ -0.87
NUP88-201ENST00000225696 PDE6HQ13956 83 aa9.64□□□□□ -0.87
NUP88-201ENST00000225696 HES1Q14469 280 aa9.64□□□□□ -0.87
NUP88-201ENST00000225696 OR9G4Q8NGQ1 327 aa9.64□□□□□ -0.87
NUP88-201ENST00000225696 MBD3L2BA0A1B0GVZ6 204 aaPredicted RBP9.63□□□□□ -0.87
NUP88-201ENST00000225696 A0A1W2PPM0 123 aa9.63□□□□□ -0.87
NUP88-201ENST00000225696 ORM1P02763 201 aa9.63□□□□□ -0.87
NUP88-201ENST00000225696 LEPP41159 167 aa9.63□□□□□ -0.87
NUP88-201ENST00000225696 GTF2H5Q6ZYL4 71 aa9.63□□□□□ -0.87
NUP88-201ENST00000225696 G3V4G9 280 aa9.63□□□□□ -0.87
NUP88-201ENST00000225696 ODF1Q14990 250 aa9.63□□□□□ -0.87
NUP88-201ENST00000225696 ZNF562Q6V9R5 426 aa9.63□□□□□ -0.87
NUP88-201ENST00000225696 DYNAPQ8N1N2 210 aa9.63□□□□□ -0.87
NUP88-201ENST00000225696 LINC01560Q8TB33 94 aa9.63□□□□□ -0.87
NUP88-201ENST00000225696 VSTM5A8MXK1 200 aa9.62□□□□□ -0.87
NUP88-201ENST00000225696 CTSGP08311 255 aa9.62□□□□□ -0.87
NUP88-201ENST00000225696 GRNP28799 593 aaKnown RBP9.62□□□□□ -0.87
NUP88-201ENST00000225696 MFAP4P55083 255 aa9.62□□□□□ -0.87
NUP88-201ENST00000225696 Q6ZQT7 251 aa9.62□□□□□ -0.87
NUP88-201ENST00000225696 NEGR1Q7Z3B1 354 aa9.62□□□□□ -0.87
NUP88-201ENST00000225696 COX8CQ7Z4L0 72 aa9.62□□□□□ -0.87
NUP88-201ENST00000225696 RNF182Q8N6D2 247 aa9.62□□□□□ -0.87
NUP88-201ENST00000225696 RNF5Q99942 180 aa9.62□□□□□ -0.87
NUP88-201ENST00000225696 SRSF8Q9BRL6 282 aaKnown RBP9.62□□□□□ -0.87
NUP88-201ENST00000225696 SPCS1Q9Y6A9 102 aa9.62□□□□□ -0.87
NUP88-201ENST00000225696 SIVA1O15304 175 aa9.61□□□□□ -0.87
NUP88-201ENST00000225696 GCSHP23434 173 aa9.61□□□□□ -0.87
NUP88-201ENST00000225696 C5orf64Q2M2E5 130 aa9.61□□□□□ -0.87
NUP88-201ENST00000225696 OR4X2Q8NGF9 303 aa9.61□□□□□ -0.87
NUP88-201ENST00000225696 C21orf62Q9NYP8 219 aa9.61□□□□□ -0.87
NUP88-201ENST00000225696 DPM3Q9P2X0 92 aa9.61□□□□□ -0.87
NUP88-201ENST00000225696 NDUFA3O95167 84 aa9.61□□□□□ -0.87
NUP88-201ENST00000225696 TNFRSF6BO95407 300 aa9.61□□□□□ -0.87
NUP88-201ENST00000225696 GTSCR1Q86UQ5 136 aa9.61□□□□□ -0.87
NUP88-201ENST00000225696 NPBQ8NG41 125 aa9.61□□□□□ -0.87
NUP88-201ENST00000225696 RAB1BQ9H0U4 201 aa9.61□□□□□ -0.87
NUP88-201ENST00000225696 IGHV3-66A0A0C4DH42 116 aa9.6□□□□□ -0.87
NUP88-201ENST00000225696 NCBP2LA6PVI3 153 aaKnown RBP9.6□□□□□ -0.87
NUP88-201ENST00000225696 B9A039 149 aa9.6□□□□□ -0.87
NUP88-201ENST00000225696 ZNF672Q499Z4 452 aaPredicted RBP9.6□□□□□ -0.87
NUP88-201ENST00000225696 NPFFR1Q9GZQ6 430 aa9.6□□□□□ -0.87
NUP88-201ENST00000225696 ZMAT4Q9H898 229 aa9.6□□□□□ -0.87
NUP88-201ENST00000225696 C11orf21Q9P2W6 132 aa9.6□□□□□ -0.87
NUP88-201ENST00000225696 IGHV3OR16-13A0A075B7E8 117 aa9.6□□□□□ -0.87
NUP88-201ENST00000225696 IGHV3-74A0A0B4J1X5 117 aa9.6□□□□□ -0.87
NUP88-201ENST00000225696 TRGV3P03979 118 aa9.6□□□□□ -0.87
NUP88-201ENST00000225696 PRSS1P07477 247 aa9.6□□□□□ -0.87
NUP88-201ENST00000225696 IL17RELQ6ZVW7 336 aa9.6□□□□□ -0.87
NUP88-201ENST00000225696 AGRNO00468 2067 aa9.59□□□□□ -0.87
NUP88-201ENST00000225696 TRAV26-2A0A0B4J265 109 aa9.59□□□□□ -0.87
NUP88-201ENST00000225696 RPL7P18124 248 aaKnown RBP9.59□□□□□ -0.87
NUP88-201ENST00000225696 SAMD5Q5TGI4 173 aa9.59□□□□□ -0.87
NUP88-201ENST00000225696 LY6G5BQ8NDX9 201 aa9.59□□□□□ -0.87
NUP88-201ENST00000225696 TMEM158Q8WZ71 300 aa9.59□□□□□ -0.87
NUP88-201ENST00000225696 ARPC1AQ92747 370 aa9.59□□□□□ -0.87
NUP88-201ENST00000225696 MAP1LC3AQ9H492 121 aa9.59□□□□□ -0.87
NUP88-201ENST00000225696 PTPRZ1P23471 2315 aaPredicted RBP9.59□□□□□ -0.87
NUP88-201ENST00000225696 SPTBN1Q01082 2364 aaKnown RBP9.59□□□□□ -0.87
NUP88-201ENST00000225696 COL12A1Q99715 3063 aa9.59□□□□□ -0.87
NUP88-201ENST00000225696 CD3EP07766 207 aa9.58□□□□□ -0.88
NUP88-201ENST00000225696 FCER1GP30273 86 aa9.58□□□□□ -0.88
NUP88-201ENST00000225696 DTX2Q86UW9 622 aa9.58□□□□□ -0.88
NUP88-201ENST00000225696 FOXC2Q99958 501 aa9.58□□□□□ -0.88
NUP88-201ENST00000225696 TRBV25-1A0A075B6N4 114 aa9.58□□□□□ -0.88
NUP88-201ENST00000225696 IGKV3D-20A0A0C4DH25 116 aa9.58□□□□□ -0.88
NUP88-201ENST00000225696 LINC01546A6NGU7 62 aa9.58□□□□□ -0.88
NUP88-201ENST00000225696 FBLL1A6NHQ2 334 aaKnown RBP9.58□□□□□ -0.88
NUP88-201ENST00000225696 TMEM238C9JI98 176 aa9.58□□□□□ -0.88
NUP88-201ENST00000225696 ZNF207O43670 478 aaKnown RBP9.58□□□□□ -0.88
NUP88-201ENST00000225696 BMI1P35226 326 aa9.58□□□□□ -0.88
NUP88-201ENST00000225696 TTC9CQ8N5M4 171 aa9.58□□□□□ -0.88
NUP88-201ENST00000225696 MAPKAPK5-AS1Q8N8E1 139 aa9.58□□□□□ -0.88
NUP88-201ENST00000225696 OR11H6Q8NGC7 330 aa9.58□□□□□ -0.88
NUP88-201ENST00000225696 PHLDA1Q8WV24 401 aaPredicted RBP9.58□□□□□ -0.88
NUP88-201ENST00000225696 CHAC1Q9BUX1 264 aa9.58□□□□□ -0.88
NUP88-201ENST00000225696 CNFNQ9BYD5 112 aa9.58□□□□□ -0.88
NUP88-201ENST00000225696 TMEM8BA6NDV4 472 aa9.57□□□□□ -0.88
NUP88-201ENST00000225696 SMIM13P0DJ93 91 aa9.57□□□□□ -0.88
NUP88-201ENST00000225696 ZC2HC1BQ5TFG8 222 aa9.57□□□□□ -0.88
NUP88-201ENST00000225696 ATRXP46100 2492 aa9.57□□□□□ -0.88
NUP88-201ENST00000225696 MAP1AP78559 2803 aaPredicted RBP9.57□□□□□ -0.88
NUP88-201ENST00000225696 IGLV2-18A0A075B6J9 118 aa9.57□□□□□ -0.88
NUP88-201ENST00000225696 TRAV40A0A0B4J280 105 aa9.57□□□□□ -0.88
NUP88-201ENST00000225696 FABP5P3A8MUU1 101 aa9.57□□□□□ -0.88
NUP88-201ENST00000225696 IGKCP01834 107 aa9.57□□□□□ -0.88
NUP88-201ENST00000225696 FABP2P12104 132 aa9.57□□□□□ -0.88
Retrieved 100 of 20,778 RNA–protein pairs in 97 ms