RNA–Protein interactions for RNA: ENST00000640313.1

VPS35-212, Transcript of VPS35, retromer complex component, humanhuman

TSL 5 BASIC

Gene VPS35, Length 141 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-212ENST00000640313 OR5D16Q8NGK9 328 aa-0.25□□□□□ -2.45
VPS35-212ENST00000640313 ZNF431Q8TF32 576 aaPredicted RBP-0.25□□□□□ -2.45
VPS35-212ENST00000640313 CANT1Q8WVQ1 401 aa-0.25□□□□□ -2.45
VPS35-212ENST00000640313 BORCS7Q96B45 105 aa-0.25□□□□□ -2.45
VPS35-212ENST00000640313 CHCHD1Q96BP2 118 aaKnown RBP-0.25□□□□□ -2.45
VPS35-212ENST00000640313 MALSU1Q96EH3 234 aa-0.25□□□□□ -2.45
VPS35-212ENST00000640313 DCUN1D1Q96GG9 259 aa-0.25□□□□□ -2.45
VPS35-212ENST00000640313 YPEL2Q96QA6 119 aa-0.25□□□□□ -2.45
VPS35-212ENST00000640313 MRPS26Q9BYN8 205 aaKnown RBP-0.25□□□□□ -2.45
VPS35-212ENST00000640313 LPAR5Q9H1C0 372 aa-0.25□□□□□ -2.45
VPS35-212ENST00000640313 TCEAL2Q9H3H9 227 aaPredicted RBP-0.25□□□□□ -2.45
VPS35-212ENST00000640313 TAF9BQ9HBM6 251 aa-0.25□□□□□ -2.45
VPS35-212ENST00000640313 POPDC3Q9HBV1 291 aa-0.25□□□□□ -2.45
VPS35-212ENST00000640313 OPTCQ9UBM4 332 aa-0.25□□□□□ -2.45
VPS35-212ENST00000640313 HSPB8Q9UJY1 196 aa-0.25□□□□□ -2.45
VPS35-212ENST00000640313 ARL5AQ9Y689 179 aa-0.25□□□□□ -2.45
VPS35-212ENST00000640313 CCDC144AA2RUR9 1427 aa-0.25□□□□□ -2.45
VPS35-212ENST00000640313 LOC285556D6RIA3 1793 aa-0.25□□□□□ -2.45
VPS35-212ENST00000640313 MED13LQ71F56 2210 aa-0.25□□□□□ -2.45
VPS35-212ENST00000640313 CHD8Q9HCK8 2581 aa-0.26□□□□□ -2.45
VPS35-212ENST00000640313 SPAG17Q6Q759 2223 aa-0.26□□□□□ -2.45
VPS35-212ENST00000640313 MYH10P35580 1976 aa-0.26□□□□□ -2.45
VPS35-212ENST00000640313 PLXND1Q9Y4D7 1925 aa-0.26□□□□□ -2.45
VPS35-212ENST00000640313 MGAMO43451 1857 aa-0.26□□□□□ -2.45
VPS35-212ENST00000640313 SIP14410 1827 aa-0.26□□□□□ -2.45
VPS35-212ENST00000640313 TAF1LQ8IZX4 1826 aa-0.26□□□□□ -2.45
VPS35-212ENST00000640313 KIF13BQ9NQT8 1826 aa-0.26□□□□□ -2.45
VPS35-212ENST00000640313 SACSQ9NZJ4 4579 aa-0.26□□□□□ -2.45
VPS35-212ENST00000640313 FMN1Q68DA7 1419 aa-0.26□□□□□ -2.45
VPS35-212ENST00000640313 ADCY9O60503 1353 aa-0.26□□□□□ -2.45
VPS35-212ENST00000640313 DUXBA0A1W2PPF3 345 aa-0.26□□□□□ -2.45
VPS35-212ENST00000640313 A0A1W2PRS3 328 aa-0.26□□□□□ -2.45
VPS35-212ENST00000640313 ODAMA1E959 279 aa-0.26□□□□□ -2.45
VPS35-212ENST00000640313 CST7O76096 145 aa-0.26□□□□□ -2.45
VPS35-212ENST00000640313 PRM1P04553 51 aa-0.26□□□□□ -2.45
VPS35-212ENST00000640313 CXCL1P09341 107 aa-0.26□□□□□ -2.45
VPS35-212ENST00000640313 IDO1P14902 403 aa-0.26□□□□□ -2.45
VPS35-212ENST00000640313 EVI2AP22794 236 aa-0.26□□□□□ -2.45
VPS35-212ENST00000640313 ARPP19P56211 112 aa-0.26□□□□□ -2.45
VPS35-212ENST00000640313 MYL6P60660 151 aa-0.26□□□□□ -2.45
VPS35-212ENST00000640313 MAGOHP61326 146 aaKnown RBP-0.26□□□□□ -2.45
VPS35-212ENST00000640313 HIST1H3AP68431 136 aa-0.26□□□□□ -2.45
VPS35-212ENST00000640313 H3F3AP84243 136 aa-0.26□□□□□ -2.45
VPS35-212ENST00000640313 AESQ08117 197 aa-0.26□□□□□ -2.45
VPS35-212ENST00000640313 EDDM3AQ14507 147 aa-0.26□□□□□ -2.45
VPS35-212ENST00000640313 FXYD3Q14802 87 aa-0.26□□□□□ -2.45
VPS35-212ENST00000640313 TMEM97Q5BJF2 176 aa-0.26□□□□□ -2.45
VPS35-212ENST00000640313 CCDC122Q5T0U0 273 aa-0.26□□□□□ -2.45
VPS35-212ENST00000640313 EIF5AL1Q6IS14 154 aaKnown RBP-0.26□□□□□ -2.45
VPS35-212ENST00000640313 CSAG1Q6PB30 78 aa-0.26□□□□□ -2.45
VPS35-212ENST00000640313 LINC00299Q6ZSB3 139 aa-0.26□□□□□ -2.45
VPS35-212ENST00000640313 PHF5AQ7RTV0 110 aaKnown RBP-0.26□□□□□ -2.45
VPS35-212ENST00000640313 S100A7AQ86SG5 101 aa-0.26□□□□□ -2.45
VPS35-212ENST00000640313 KRT222Q8N1A0 295 aa-0.26□□□□□ -2.45
VPS35-212ENST00000640313 CCL4L1Q8NHW4 92 aa-0.26□□□□□ -2.45
VPS35-212ENST00000640313 ZHX1-C8orf76Q96EF9 292 aa-0.26□□□□□ -2.45
VPS35-212ENST00000640313 CARD19Q96LW7 228 aa-0.26□□□□□ -2.45
VPS35-212ENST00000640313 NPCDR1Q9BY65 106 aa-0.26□□□□□ -2.45
VPS35-212ENST00000640313 IMUPQ9GZP8 106 aa-0.26□□□□□ -2.45
VPS35-212ENST00000640313 CACYBPQ9HB71 228 aaKnown RBP-0.26□□□□□ -2.45
VPS35-212ENST00000640313 CTNNBIP1Q9NSA3 81 aaPredicted RBP-0.26□□□□□ -2.45
VPS35-212ENST00000640313 BOKQ9UMX3 212 aaPredicted RBP-0.26□□□□□ -2.45
VPS35-212ENST00000640313 FLNBO75369 2602 aaKnown RBP-0.26□□□□□ -2.45
VPS35-212ENST00000640313 GVINP1Q7Z2Y8 2422 aa-0.26□□□□□ -2.45
VPS35-212ENST00000640313 C2CD3Q4AC94 2353 aa-0.26□□□□□ -2.45
VPS35-212ENST00000640313 F5P12259 2224 aa-0.26□□□□□ -2.45
VPS35-212ENST00000640313 DOCK5Q9H7D0 1870 aa-0.27□□□□□ -2.45
VPS35-212ENST00000640313 COL24A1Q17RW2 1714 aa-0.27□□□□□ -2.45
VPS35-212ENST00000640313 CTTNBP2Q8WZ74 1663 aa-0.27□□□□□ -2.45
VPS35-212ENST00000640313 FRMPD1Q5SYB0 1578 aa-0.27□□□□□ -2.45
VPS35-212ENST00000640313 CEP164Q9UPV0 1460 aa-0.27□□□□□ -2.45
VPS35-212ENST00000640313 PIK3C2GO75747 1445 aa-0.27□□□□□ -2.45
VPS35-212ENST00000640313 WNK1Q9H4A3 2382 aa-0.27□□□□□ -2.45
VPS35-212ENST00000640313 CPDO75976 1380 aa-0.27□□□□□ -2.45
VPS35-212ENST00000640313 DSPPQ9NZW4 1301 aa-0.27□□□□□ -2.45
VPS35-212ENST00000640313 TRAV5A0A0B4J249 113 aa-0.27□□□□□ -2.45
VPS35-212ENST00000640313 LOC101927531A0A1B0GV80 90 aa-0.27□□□□□ -2.45
VPS35-212ENST00000640313 FAM159BA6NKW6 160 aa-0.27□□□□□ -2.45
VPS35-212ENST00000640313 TMEM114B3SHH9 223 aa-0.27□□□□□ -2.45
VPS35-212ENST00000640313 K7ERJ3 54 aa-0.27□□□□□ -2.45
VPS35-212ENST00000640313 M0R036 132 aa-0.27□□□□□ -2.45
VPS35-212ENST00000640313 GPR31O00270 319 aa-0.27□□□□□ -2.45
VPS35-212ENST00000640313 SULT1C4O75897 302 aa-0.27□□□□□ -2.45
VPS35-212ENST00000640313 LYPLA2O95372 231 aa-0.27□□□□□ -2.45
VPS35-212ENST00000640313 IGF2P01344 180 aa-0.27□□□□□ -2.45
VPS35-212ENST00000640313 GYPBP06028 91 aa-0.27□□□□□ -2.45
VPS35-212ENST00000640313 RPS3P23396 243 aaKnown RBP eCLIP-0.27□□□□□ -2.45
VPS35-212ENST00000640313 NFYBP25208 207 aa-0.27□□□□□ -2.45
VPS35-212ENST00000640313 ERP29P30040 261 aaKnown RBP-0.27□□□□□ -2.45
VPS35-212ENST00000640313 PHBP35232 272 aa-0.27□□□□□ -2.45
VPS35-212ENST00000640313 TMBIM6P55061 237 aa-0.27□□□□□ -2.45
VPS35-212ENST00000640313 ERVS71-1P61550 626 aa-0.27□□□□□ -2.45
VPS35-212ENST00000640313 HSPE1P61604 102 aaKnown RBP-0.27□□□□□ -2.45
VPS35-212ENST00000640313 VBP1P61758 197 aa-0.27□□□□□ -2.45
VPS35-212ENST00000640313 UBE2BP63146 152 aa-0.27□□□□□ -2.45
VPS35-212ENST00000640313 MYL5Q02045 173 aa-0.27□□□□□ -2.45
VPS35-212ENST00000640313 TMED1Q13445 227 aa-0.27□□□□□ -2.45
VPS35-212ENST00000640313 DIAPH2-AS1Q14236 149 aa-0.27□□□□□ -2.45
VPS35-212ENST00000640313 ESPL1Q14674 2120 aa-0.27□□□□□ -2.45
VPS35-212ENST00000640313 AKIRIN2Q53H80 203 aa-0.27□□□□□ -2.45
Retrieved 100 of 20,778 RNA–protein pairs in 46.6 ms