RNA–Protein interactions for RNA: ENST00000600552.5

SHKBP1-223, Transcript of SH3KBP1 binding protein 1, humanhuman

TSL 4

Gene SHKBP1, Length 566 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHKBP1-223ENST00000600552 TRAV6A0A075B6T7 132 aa12.29□□□□□ -0.44
SHKBP1-223ENST00000600552 TRAV12-3A0A0B4J271 114 aa12.29□□□□□ -0.44
SHKBP1-223ENST00000600552 FAM24AA6NFZ4 105 aa12.29□□□□□ -0.44
SHKBP1-223ENST00000600552 C16orf90A8MZG2 172 aa12.29□□□□□ -0.44
SHKBP1-223ENST00000600552 H3BQ15 152 aa12.29□□□□□ -0.44
SHKBP1-223ENST00000600552 IL7P13232 177 aa12.29□□□□□ -0.44
SHKBP1-223ENST00000600552 CXCL2P19875 107 aa12.29□□□□□ -0.44
SHKBP1-223ENST00000600552 RAB31Q13636 194 aa12.29□□□□□ -0.44
SHKBP1-223ENST00000600552 GFI1BQ5VTD9 330 aa12.29□□□□□ -0.44
SHKBP1-223ENST00000600552 ZNF493Q6ZR52 646 aa12.29□□□□□ -0.44
SHKBP1-223ENST00000600552 Q6ZRG5 221 aa12.29□□□□□ -0.44
SHKBP1-223ENST00000600552 SSX7Q7RTT5 188 aa12.29□□□□□ -0.44
SHKBP1-223ENST00000600552 NRARPQ7Z6K4 114 aa12.29□□□□□ -0.44
SHKBP1-223ENST00000600552 TMEM263Q8WUH6 116 aaKnown RBP12.29□□□□□ -0.44
SHKBP1-223ENST00000600552 GNPNAT1Q96EK6 184 aaPredicted RBP12.29□□□□□ -0.44
SHKBP1-223ENST00000600552 GGACTQ9BVM4 153 aa12.29□□□□□ -0.44
SHKBP1-223ENST00000600552 DNAJC4Q9NNZ3 241 aa12.29□□□□□ -0.44
SHKBP1-223ENST00000600552 TRAV26-1A0A087WT03 109 aa12.28□□□□□ -0.44
SHKBP1-223ENST00000600552 SNURFLB1AK76 121 aa12.28□□□□□ -0.44
SHKBP1-223ENST00000600552 RNASE8Q8TDE3 154 aaKnown RBP12.28□□□□□ -0.44
SHKBP1-223ENST00000600552 SEC22CQ9BRL7 303 aa12.28□□□□□ -0.44
SHKBP1-223ENST00000600552 C20orf85Q9H1P6 137 aa12.28□□□□□ -0.44
SHKBP1-223ENST00000600552 PXMP4Q9Y6I8 212 aa12.28□□□□□ -0.44
SHKBP1-223ENST00000600552 RLN2P04090 185 aa12.27□□□□□ -0.45
SHKBP1-223ENST00000600552 CT45A10P0DMU9 189 aa12.27□□□□□ -0.45
SHKBP1-223ENST00000600552 S100A10P60903 97 aa12.27□□□□□ -0.45
SHKBP1-223ENST00000600552 ZNF701M0R085 212 aaPredicted RBP12.26□□□□□ -0.45
SHKBP1-223ENST00000600552 LEPP41159 167 aa12.26□□□□□ -0.45
SHKBP1-223ENST00000600552 UQCC1Q9NVA1 299 aa12.26□□□□□ -0.45
SHKBP1-223ENST00000600552 UBE2L5PA0A1B0GUS4 154 aa12.25□□□□□ -0.45
SHKBP1-223ENST00000600552 PLA2G10O15496 165 aa12.25□□□□□ -0.45
SHKBP1-223ENST00000600552 LYRM1O43325 122 aa12.25□□□□□ -0.45
SHKBP1-223ENST00000600552 IGLC2P0DOY2 106 aa12.25□□□□□ -0.45
SHKBP1-223ENST00000600552 BAXQ07812 192 aa12.25□□□□□ -0.45
SHKBP1-223ENST00000600552 ERCC8Q13216 396 aa12.25□□□□□ -0.45
SHKBP1-223ENST00000600552 OR1L4Q8NGR5 311 aa12.25□□□□□ -0.45
SHKBP1-223ENST00000600552 C20orf144Q9BQM9 153 aa12.25□□□□□ -0.45
SHKBP1-223ENST00000600552 KRTAP4-5Q9BYR2 181 aa12.25□□□□□ -0.45
SHKBP1-223ENST00000600552 Q9H8V8 135 aa12.25□□□□□ -0.45
SHKBP1-223ENST00000600552 PVALBP20472 110 aaPredicted RBP12.24□□□□□ -0.45
SHKBP1-223ENST00000600552 M6PRP20645 277 aa12.24□□□□□ -0.45
SHKBP1-223ENST00000600552 HOXA5P20719 270 aa12.24□□□□□ -0.45
SHKBP1-223ENST00000600552 CNPY1Q3B7I2 92 aa12.24□□□□□ -0.45
SHKBP1-223ENST00000600552 SAT2Q96F10 170 aaPredicted RBP12.24□□□□□ -0.45
SHKBP1-223ENST00000600552 ZNF586Q9NXT0 402 aa12.24□□□□□ -0.45
SHKBP1-223ENST00000600552 TCRBP04435 133 aa12.23□□□□□ -0.45
SHKBP1-223ENST00000600552 C12orf45Q8N5I9 185 aaPredicted RBP12.23□□□□□ -0.45
SHKBP1-223ENST00000600552 RXFP4Q8TDU9 374 aa12.23□□□□□ -0.45
SHKBP1-223ENST00000600552 ZNF431Q8TF32 576 aaPredicted RBP12.23□□□□□ -0.45
SHKBP1-223ENST00000600552 BLNKQ8WV28 456 aa12.23□□□□□ -0.45
SHKBP1-223ENST00000600552 C2orf50Q96LR7 162 aa12.23□□□□□ -0.45
SHKBP1-223ENST00000600552 TMPRSS5Q9H3S3 457 aa12.23□□□□□ -0.45
SHKBP1-223ENST00000600552 SLC39A9Q9NUM3 307 aa12.23□□□□□ -0.45
SHKBP1-223ENST00000600552 NUDT15Q9NV35 164 aa12.23□□□□□ -0.45
SHKBP1-223ENST00000600552 TIMM9Q9Y5J7 89 aa12.23□□□□□ -0.45
SHKBP1-223ENST00000600552 M0R3E3 92 aa12.22□□□□□ -0.45
SHKBP1-223ENST00000600552 FGF7P21781 194 aa12.22□□□□□ -0.45
SHKBP1-223ENST00000600552 GUK1Q16774 197 aa12.22□□□□□ -0.45
SHKBP1-223ENST00000600552 Q6ZTI0 123 aa12.22□□□□□ -0.45
SHKBP1-223ENST00000600552 PFDN5Q99471 154 aa12.22□□□□□ -0.45
SHKBP1-223ENST00000600552 WDR83OSQ9Y284 106 aa12.22□□□□□ -0.45
SHKBP1-223ENST00000600552 ABCA13Q86UQ4 5058 aa12.21□□□□□ -0.45
SHKBP1-223ENST00000600552 TRGV2A0A075B6R0 118 aa12.21□□□□□ -0.45
SHKBP1-223ENST00000600552 IGSF23A1L1A6 192 aa12.21□□□□□ -0.45
SHKBP1-223ENST00000600552 NPIPB6E9PJ23 425 aa12.21□□□□□ -0.45
SHKBP1-223ENST00000600552 H2AFB2P0C5Z0 115 aa12.21□□□□□ -0.45
SHKBP1-223ENST00000600552 RNASE4P34096 147 aaKnown RBP12.21□□□□□ -0.45
SHKBP1-223ENST00000600552 ESRGQ1W209 222 aa12.21□□□□□ -0.45
SHKBP1-223ENST00000600552 GSN-AS1Q9NRJ2 163 aa12.21□□□□□ -0.45
SHKBP1-223ENST00000600552 PYYP10082 97 aa12.2□□□□□ -0.46
SHKBP1-223ENST00000600552 SULT1A1P50225 295 aa12.2□□□□□ -0.46
SHKBP1-223ENST00000600552 RAB32Q13637 225 aa12.2□□□□□ -0.46
SHKBP1-223ENST00000600552 SPATA12Q7Z6I5 190 aa12.2□□□□□ -0.46
SHKBP1-223ENST00000600552 STX12Q86Y82 276 aa12.2□□□□□ -0.46
SHKBP1-223ENST00000600552 LINC00612Q8N6U2 182 aa12.2□□□□□ -0.46
SHKBP1-223ENST00000600552 GPN1Q9HCN4 374 aaPredicted RBP12.2□□□□□ -0.46
SHKBP1-223ENST00000600552 TRGV1A0A0A0MS02 117 aa12.19□□□□□ -0.46
SHKBP1-223ENST00000600552 S100A11P31949 105 aa12.19□□□□□ -0.46
SHKBP1-223ENST00000600552 RPL29P47914 159 aaKnown RBP12.19□□□□□ -0.46
SHKBP1-223ENST00000600552 CD300CQ08708 224 aa12.19□□□□□ -0.46
SHKBP1-223ENST00000600552 BTN1A1Q13410 526 aa12.19□□□□□ -0.46
SHKBP1-223ENST00000600552 EXOC3-AS1Q8N2X6 119 aa12.19□□□□□ -0.46
SHKBP1-223ENST00000600552 PYGO2Q9BRQ0 406 aa12.19□□□□□ -0.46
SHKBP1-223ENST00000600552 KRTAP1-5Q9BYS1 174 aa12.19□□□□□ -0.46
SHKBP1-223ENST00000600552 C11orf1Q9H5F2 150 aa12.19□□□□□ -0.46
SHKBP1-223ENST00000600552 TRBV19A0A075B6N1 114 aa12.18□□□□□ -0.46
SHKBP1-223ENST00000600552 C7orf71A4D174 169 aa12.18□□□□□ -0.46
SHKBP1-223ENST00000600552 SLC25A5P05141 298 aaKnown RBP12.18□□□□□ -0.46
SHKBP1-223ENST00000600552 HBG1P69891 147 aa12.18□□□□□ -0.46
SHKBP1-223ENST00000600552 HBG2P69892 147 aa12.18□□□□□ -0.46
SHKBP1-223ENST00000600552 GCSAMLQ5JQS6 135 aa12.18□□□□□ -0.46
SHKBP1-223ENST00000600552 TMEM252Q8N6L7 170 aa12.18□□□□□ -0.46
SHKBP1-223ENST00000600552 MAPKAPK5-AS1Q8N8E1 139 aa12.18□□□□□ -0.46
SHKBP1-223ENST00000600552 ODF3Q96PU9 254 aa12.18□□□□□ -0.46
SHKBP1-223ENST00000600552 AGPAT4-IT1Q9H0P7 198 aa12.18□□□□□ -0.46
SHKBP1-223ENST00000600552 LYRM2Q9NU23 88 aaPredicted RBP12.18□□□□□ -0.46
SHKBP1-223ENST00000600552 IGHV3-53P01767 116 aa12.17□□□□□ -0.46
SHKBP1-223ENST00000600552 GPX1P07203 203 aa12.17□□□□□ -0.46
SHKBP1-223ENST00000600552 HIST1H1EP10412 219 aaKnown RBP12.17□□□□□ -0.46
SHKBP1-223ENST00000600552 TTC32Q5I0X7 151 aa12.17□□□□□ -0.46
Retrieved 100 of 20,778 RNA–protein pairs in 157.3 ms