RNA–Protein interactions for RNA: ENST00000591475.5

VPS4B-206, Transcript of vacuolar protein sorting 4 homolog B, humanhuman

TSL 1 (best)

Gene VPS4B, Length 2,008 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS4B-206ENST00000591475 PRB3Q04118 309 aaPredicted RBP8.53□□□□□ -1.04
VPS4B-206ENST00000591475 RNF151Q2KHN1 245 aa8.53□□□□□ -1.04
VPS4B-206ENST00000591475 C2orf91Q6ZV80 131 aa8.53□□□□□ -1.04
VPS4B-206ENST00000591475 S100A7AQ86SG5 101 aa8.53□□□□□ -1.04
VPS4B-206ENST00000591475 RNF125Q96EQ8 232 aa8.53□□□□□ -1.04
VPS4B-206ENST00000591475 ASCL2Q99929 193 aa8.53□□□□□ -1.04
VPS4B-206ENST00000591475 PEF1Q9UBV8 284 aaKnown RBP8.53□□□□□ -1.04
VPS4B-206ENST00000591475 SERTM2A0A1B0GWG4 89 aa8.53□□□□□ -1.04
VPS4B-206ENST00000591475 NCR2O95944 276 aa8.53□□□□□ -1.04
VPS4B-206ENST00000591475 SEC11AP67812 179 aa8.53□□□□□ -1.04
VPS4B-206ENST00000591475 PSG9Q00887 426 aa8.53□□□□□ -1.04
VPS4B-206ENST00000591475 ANKRD39Q53RE8 183 aa8.53□□□□□ -1.04
VPS4B-206ENST00000591475 ZNF491Q8N8L2 437 aa8.53□□□□□ -1.04
VPS4B-206ENST00000591475 ZNF414Q96IQ9 312 aa8.53□□□□□ -1.04
VPS4B-206ENST00000591475 CST9LQ9H4G1 147 aa8.53□□□□□ -1.04
VPS4B-206ENST00000591475 SPTAN1Q13813 2472 aaKnown RBP8.52□□□□□ -1.05
VPS4B-206ENST00000591475 LRRK2Q5S007 2527 aa8.52□□□□□ -1.05
VPS4B-206ENST00000591475 MRPS12O15235 138 aaKnown RBP8.52□□□□□ -1.05
VPS4B-206ENST00000591475 PPBPP02775 128 aa8.52□□□□□ -1.05
VPS4B-206ENST00000591475 IL4P05112 153 aa8.52□□□□□ -1.05
VPS4B-206ENST00000591475 FCGR2BP31994 310 aaPredicted RBP8.52□□□□□ -1.05
VPS4B-206ENST00000591475 IFI27P40305 119 aaPredicted RBP8.52□□□□□ -1.05
VPS4B-206ENST00000591475 SRSF1Q07955 248 aaKnown RBP eCLIP8.52□□□□□ -1.05
VPS4B-206ENST00000591475 TMEM97Q5BJF2 176 aa8.52□□□□□ -1.05
VPS4B-206ENST00000591475 OR8A1Q8NGG7 326 aa8.52□□□□□ -1.05
VPS4B-206ENST00000591475 C8orf49Q96NF6 230 aa8.52□□□□□ -1.05
VPS4B-206ENST00000591475 SPOCK3Q9BQ16 436 aa8.52□□□□□ -1.05
VPS4B-206ENST00000591475 AAMDCQ9H7C9 122 aa8.52□□□□□ -1.05
VPS4B-206ENST00000591475 U3KQK5 164 aa8.52□□□□□ -1.05
VPS4B-206ENST00000591475 LRBAP50851 2863 aa8.52□□□□□ -1.05
VPS4B-206ENST00000591475 WI2-2373I1.2A0A1W2PRP0 233 aa8.51□□□□□ -1.05
VPS4B-206ENST00000591475 TMEM189A5PLL7 270 aa8.51□□□□□ -1.05
VPS4B-206ENST00000591475 D6R8Y8 96 aa8.51□□□□□ -1.05
VPS4B-206ENST00000591475 PDE6HQ13956 83 aa8.51□□□□□ -1.05
VPS4B-206ENST00000591475 LGALS9BQ3B8N2 356 aa8.51□□□□□ -1.05
VPS4B-206ENST00000591475 LDLRAD2Q5SZI1 272 aa8.51□□□□□ -1.05
VPS4B-206ENST00000591475 LGALS9CQ6DKI2 356 aa8.51□□□□□ -1.05
VPS4B-206ENST00000591475 LYZL1Q6UWQ5 148 aa8.51□□□□□ -1.05
VPS4B-206ENST00000591475 OR1N2Q8NGR9 330 aa8.51□□□□□ -1.05
VPS4B-206ENST00000591475 PRELID3AQ96N28 172 aa8.51□□□□□ -1.05
VPS4B-206ENST00000591475 RAB1BQ9H0U4 201 aa8.51□□□□□ -1.05
VPS4B-206ENST00000591475 SIGLEC8Q9NYZ4 499 aa8.51□□□□□ -1.05
VPS4B-206ENST00000591475 ABCA4P78363 2273 aa8.51□□□□□ -1.05
VPS4B-206ENST00000591475 PPIAL4CA0A0B4J2A2 164 aa8.51□□□□□ -1.05
VPS4B-206ENST00000591475 LOC389332A0A1B0GUA5 103 aa8.51□□□□□ -1.05
VPS4B-206ENST00000591475 C7orf71A4D174 169 aa8.51□□□□□ -1.05
VPS4B-206ENST00000591475 LY6LH3BQJ8 138 aa8.51□□□□□ -1.05
VPS4B-206ENST00000591475 M0R3E3 92 aa8.51□□□□□ -1.05
VPS4B-206ENST00000591475 FAM106CPP0CH98 169 aa8.51□□□□□ -1.05
VPS4B-206ENST00000591475 PPIAL4GP0DN37 164 aa8.51□□□□□ -1.05
VPS4B-206ENST00000591475 COTL1Q14019 142 aa8.51□□□□□ -1.05
VPS4B-206ENST00000591475 FAM106AQ4KMX7 169 aa8.51□□□□□ -1.05
VPS4B-206ENST00000591475 OCIAD2Q56VL3 154 aa8.51□□□□□ -1.05
VPS4B-206ENST00000591475 FAM104BQ5XKR9 115 aa8.51□□□□□ -1.05
VPS4B-206ENST00000591475 ORMDL3Q8N138 153 aa8.51□□□□□ -1.05
VPS4B-206ENST00000591475 A0A096LNJ9 63 aa8.5□□□□□ -1.05
VPS4B-206ENST00000591475 TRAV8-6A0A0B4J262 113 aa8.5□□□□□ -1.05
VPS4B-206ENST00000591475 SNAI2O43623 268 aa8.5□□□□□ -1.05
VPS4B-206ENST00000591475 HRNRQ86YZ3 2850 aaPredicted RBP8.5□□□□□ -1.05
VPS4B-206ENST00000591475 DCHS2Q6V1P9 2916 aa8.5□□□□□ -1.05
VPS4B-206ENST00000591475 TMSB15BA0A087X1C1 80 aa8.49□□□□□ -1.05
VPS4B-206ENST00000591475 TMEM213A2RRL7 107 aa8.49□□□□□ -1.05
VPS4B-206ENST00000591475 J3QKU1 62 aa8.49□□□□□ -1.05
VPS4B-206ENST00000591475 TIMM23O14925 209 aa8.49□□□□□ -1.05
VPS4B-206ENST00000591475 GNG7O60262 68 aa8.49□□□□□ -1.05
VPS4B-206ENST00000591475 SH2D1AO60880 128 aa8.49□□□□□ -1.05
VPS4B-206ENST00000591475 PRB4P10163 310 aaPredicted RBP8.49□□□□□ -1.05
VPS4B-206ENST00000591475 FGF6P10767 208 aa8.49□□□□□ -1.05
VPS4B-206ENST00000591475 PLA2G2AP14555 144 aa8.49□□□□□ -1.05
VPS4B-206ENST00000591475 LOXL1Q08397 574 aaPredicted RBP8.49□□□□□ -1.05
VPS4B-206ENST00000591475 PKDREJQ9NTG1 2253 aa8.49□□□□□ -1.05
VPS4B-206ENST00000591475 NBR2O15453 112 aa8.49□□□□□ -1.05
VPS4B-206ENST00000591475 HBDP02042 147 aa8.49□□□□□ -1.05
VPS4B-206ENST00000591475 FOXE3Q13461 319 aa8.49□□□□□ -1.05
VPS4B-206ENST00000591475 AMN1Q8IY45 258 aa8.49□□□□□ -1.05
VPS4B-206ENST00000591475 VPS25Q9BRG1 176 aa8.49□□□□□ -1.05
VPS4B-206ENST00000591475 GAGE12BA1L429 117 aa8.48□□□□□ -1.05
VPS4B-206ENST00000591475 A6NDN8 102 aa8.48□□□□□ -1.05
VPS4B-206ENST00000591475 MFAP4P55083 255 aa8.48□□□□□ -1.05
VPS4B-206ENST00000591475 MRPL51Q4U2R6 128 aaKnown RBP8.48□□□□□ -1.05
VPS4B-206ENST00000591475 DTX2Q86UW9 622 aa8.48□□□□□ -1.05
VPS4B-206ENST00000591475 BOD1L2Q8IYS8 172 aa8.48□□□□□ -1.05
VPS4B-206ENST00000591475 ARL6IP6Q8N6S5 226 aa8.48□□□□□ -1.05
VPS4B-206ENST00000591475 AP1S3Q96PC3 154 aa8.48□□□□□ -1.05
VPS4B-206ENST00000591475 ONECUT1Q9UBC0 465 aa8.48□□□□□ -1.05
VPS4B-206ENST00000591475 RABAC1Q9UI14 185 aa8.48□□□□□ -1.05
VPS4B-206ENST00000591475 UTP20O75691 2785 aaKnown RBP8.48□□□□□ -1.05
VPS4B-206ENST00000591475 A0A1W2PPR1 153 aa8.47□□□□□ -1.05
VPS4B-206ENST00000591475 FBLL1A6NHQ2 334 aaKnown RBP8.47□□□□□ -1.05
VPS4B-206ENST00000591475 LYNX1G3V0Z9 82 aa8.47□□□□□ -1.05
VPS4B-206ENST00000591475 H3BRM9 83 aa8.47□□□□□ -1.05
VPS4B-206ENST00000591475 SMAD7O15105 426 aaKnown RBP8.47□□□□□ -1.05
VPS4B-206ENST00000591475 LYNX1P0DP58 116 aa8.47□□□□□ -1.05
VPS4B-206ENST00000591475 CACNG7P62955 275 aa8.47□□□□□ -1.05
VPS4B-206ENST00000591475 C11orf71Q6IPW1 123 aa8.47□□□□□ -1.05
VPS4B-206ENST00000591475 COX8CQ7Z4L0 72 aa8.47□□□□□ -1.05
VPS4B-206ENST00000591475 OR9G4Q8NGQ1 327 aa8.47□□□□□ -1.05
VPS4B-206ENST00000591475 ZNF48Q96MX3 618 aaPredicted RBP8.47□□□□□ -1.05
VPS4B-206ENST00000591475 A1L4Q6 167 aa8.47□□□□□ -1.05
VPS4B-206ENST00000591475 GAGE10A6NGK3 116 aa8.47□□□□□ -1.05
Retrieved 100 of 20,778 RNA–protein pairs in 302.5 ms