RNA–Protein interactions for RNA: ENST00000585941.5

LIG3-205, Transcript of DNA ligase 3, humanhuman

TSL 1 (best)

Gene LIG3, Length 1,699 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3-205ENST00000585941 PEF1Q9UBV8 284 aaKnown RBP10.9□□□□□ -0.66
LIG3-205ENST00000585941 ITPR3Q14573 2671 aa10.9□□□□□ -0.67
LIG3-205ENST00000585941 TEX15Q9BXT5 2789 aa10.89□□□□□ -0.67
LIG3-205ENST00000585941 CHEK1O14757 476 aa10.89□□□□□ -0.67
LIG3-205ENST00000585941 TRBV12-3P01733 135 aa10.89□□□□□ -0.67
LIG3-205ENST00000585941 IGHV3-11P01762 117 aa10.89□□□□□ -0.67
LIG3-205ENST00000585941 ELANEP08246 267 aa10.89□□□□□ -0.67
LIG3-205ENST00000585941 CT45A10P0DMU9 189 aa10.89□□□□□ -0.67
LIG3-205ENST00000585941 TCL1AP56279 114 aa10.89□□□□□ -0.67
LIG3-205ENST00000585941 HIST2H2BCQ6DN03 193 aa10.89□□□□□ -0.67
LIG3-205ENST00000585941 LCN12Q6JVE5 192 aa10.89□□□□□ -0.67
LIG3-205ENST00000585941 LINC00518Q8N0U6 118 aa10.89□□□□□ -0.67
LIG3-205ENST00000585941 CIARTQ8N365 385 aaPredicted RBP10.89□□□□□ -0.67
LIG3-205ENST00000585941 WIPF2Q8TF74 440 aaPredicted RBP10.89□□□□□ -0.67
LIG3-205ENST00000585941 GLMPQ8WWB7 406 aa10.89□□□□□ -0.67
LIG3-205ENST00000585941 XKRY2A2RUG3 117 aa10.89□□□□□ -0.67
LIG3-205ENST00000585941 ZNF207O43670 478 aaKnown RBP10.89□□□□□ -0.67
LIG3-205ENST00000585941 HLA-DQA1P01909 254 aa10.89□□□□□ -0.67
LIG3-205ENST00000585941 APOHP02749 345 aaPredicted RBP10.89□□□□□ -0.67
LIG3-205ENST00000585941 TMEM95Q3KNT9 176 aa10.89□□□□□ -0.67
LIG3-205ENST00000585941 FAM106AQ4KMX7 169 aa10.89□□□□□ -0.67
LIG3-205ENST00000585941 MRPL18Q9H0U6 180 aaKnown RBP10.89□□□□□ -0.67
LIG3-205ENST00000585941 ZNF702PQ9H963 129 aa10.89□□□□□ -0.67
LIG3-205ENST00000585941 CSMD1Q96PZ7 3565 aa10.88□□□□□ -0.67
LIG3-205ENST00000585941 SNURFLB1AK76 121 aa10.88□□□□□ -0.67
LIG3-205ENST00000585941 K7EMT4 169 aa10.88□□□□□ -0.67
LIG3-205ENST00000585941 CA1P00915 261 aaPredicted RBP10.88□□□□□ -0.67
LIG3-205ENST00000585941 CBLN1P23435 193 aa10.88□□□□□ -0.67
LIG3-205ENST00000585941 S100A2P29034 98 aa10.88□□□□□ -0.67
LIG3-205ENST00000585941 LINC00322Q6ZN03 302 aaPredicted RBP10.88□□□□□ -0.67
LIG3-205ENST00000585941 GPHB5Q86YW7 130 aa10.88□□□□□ -0.67
LIG3-205ENST00000585941 Q8N2B8 174 aa10.88□□□□□ -0.67
LIG3-205ENST00000585941 NUP35Q8NFH5 326 aa10.88□□□□□ -0.67
LIG3-205ENST00000585941 ZC2HC1AQ96GY0 325 aa10.88□□□□□ -0.67
LIG3-205ENST00000585941 NEU1Q99519 415 aa10.88□□□□□ -0.67
LIG3-205ENST00000585941 NDFIP1Q9BT67 221 aa10.88□□□□□ -0.67
LIG3-205ENST00000585941 IGHV3-66A0A0C4DH42 116 aa10.87□□□□□ -0.67
LIG3-205ENST00000585941 HIGD1CA8MV81 97 aa10.87□□□□□ -0.67
LIG3-205ENST00000585941 UNQ9165/PRO28630Q6UXU0 137 aa10.87□□□□□ -0.67
LIG3-205ENST00000585941 C8orf86Q6ZUL3 223 aa10.87□□□□□ -0.67
LIG3-205ENST00000585941 HIST3H2BBQ8N257 126 aa10.87□□□□□ -0.67
LIG3-205ENST00000585941 DAZ1Q9NQZ3 744 aaKnown RBP10.87□□□□□ -0.67
LIG3-205ENST00000585941 SMAD7O15105 426 aaKnown RBP10.86□□□□□ -0.67
LIG3-205ENST00000585941 SMIM6P0DI80 62 aa10.86□□□□□ -0.67
LIG3-205ENST00000585941 BMI1P35226 326 aa10.86□□□□□ -0.67
LIG3-205ENST00000585941 TMEM136Q6ZRR5 245 aa10.86□□□□□ -0.67
LIG3-205ENST00000585941 RBPMS2Q6ZRY4 209 aaKnown RBP10.86□□□□□ -0.67
LIG3-205ENST00000585941 SIGLECL1Q8N7X8 197 aa10.86□□□□□ -0.67
LIG3-205ENST00000585941 RNF152Q8N8N0 203 aa10.86□□□□□ -0.67
LIG3-205ENST00000585941 OR2D3Q8NGH3 330 aa10.86□□□□□ -0.67
LIG3-205ENST00000585941 PRR25Q96S07 402 aa10.86□□□□□ -0.67
LIG3-205ENST00000585941 IGHV3OR16-13A0A075B7E8 117 aa10.85□□□□□ -0.67
LIG3-205ENST00000585941 IGKV2-40A0A087WW87 121 aaPredicted RBP10.85□□□□□ -0.67
LIG3-205ENST00000585941 IGHV3-49A0A0A0MS15 119 aa10.85□□□□□ -0.67
LIG3-205ENST00000585941 IGHV3-74A0A0B4J1X5 117 aa10.85□□□□□ -0.67
LIG3-205ENST00000585941 IGKV2D-40P01614 121 aaPredicted RBP10.85□□□□□ -0.67
LIG3-205ENST00000585941 Q6AWC8 147 aa10.85□□□□□ -0.67
LIG3-205ENST00000585941 MRPL54Q6P161 138 aaKnown RBP10.85□□□□□ -0.67
LIG3-205ENST00000585941 LCNL1Q6ZST4 164 aa10.85□□□□□ -0.67
LIG3-205ENST00000585941 MYOZ3Q8TDC0 251 aa10.85□□□□□ -0.67
LIG3-205ENST00000585941 UFC1Q9Y3C8 167 aa10.85□□□□□ -0.67
LIG3-205ENST00000585941 IGHV7-4-1A0A0J9YVY3 117 aa10.85□□□□□ -0.67
LIG3-205ENST00000585941 CD5LO43866 347 aa10.85□□□□□ -0.67
LIG3-205ENST00000585941 SPINK4O60575 86 aa10.85□□□□□ -0.67
LIG3-205ENST00000585941 FOXA3P55318 350 aaPredicted RBP10.85□□□□□ -0.67
LIG3-205ENST00000585941 RAB4BP61018 213 aa10.85□□□□□ -0.67
LIG3-205ENST00000585941 SCGB2A2Q13296 93 aa10.85□□□□□ -0.67
LIG3-205ENST00000585941 FAM162BQ5T6X4 162 aa10.85□□□□□ -0.67
LIG3-205ENST00000585941 SAMD13Q5VXD3 122 aa10.85□□□□□ -0.67
LIG3-205ENST00000585941 UBE2E2Q96LR5 201 aa10.85□□□□□ -0.67
LIG3-205ENST00000585941 MXRA5Q9NR99 2828 aa10.85□□□□□ -0.67
LIG3-205ENST00000585941 CCDC168Q8NDH2 2452 aa10.84□□□□□ -0.67
LIG3-205ENST00000585941 C16orf92Q96LL3 132 aa10.84□□□□□ -0.67
LIG3-205ENST00000585941 GPR61Q9BZJ8 451 aa10.84□□□□□ -0.67
LIG3-205ENST00000585941 TRAV8-2A0A0B4J237 113 aa10.83□□□□□ -0.68
LIG3-205ENST00000585941 ZNF705FA8MVS1 300 aaPredicted RBP10.83□□□□□ -0.68
LIG3-205ENST00000585941 LGALS1P09382 135 aaKnown RBP10.83□□□□□ -0.68
LIG3-205ENST00000585941 CRISP2P16562 243 aa10.83□□□□□ -0.68
LIG3-205ENST00000585941 HLA-DMBP28068 263 aa10.83□□□□□ -0.68
LIG3-205ENST00000585941 IGFL4Q6B9Z1 124 aa10.83□□□□□ -0.68
LIG3-205ENST00000585941 VGLL1Q99990 258 aa10.83□□□□□ -0.68
LIG3-205ENST00000585941 PPP1R14DQ9NXH3 145 aa10.83□□□□□ -0.68
LIG3-205ENST00000585941 SMPXQ9UHP9 88 aa10.83□□□□□ -0.68
LIG3-205ENST00000585941 FLNAP21333 2647 aaKnown RBP10.83□□□□□ -0.68
LIG3-205ENST00000585941 PDZD2O15018 2839 aa10.83□□□□□ -0.68
LIG3-205ENST00000585941 A0A1B0GXF2 115 aa10.82□□□□□ -0.68
LIG3-205ENST00000585941 IFITM10A6NMD0 228 aa10.82□□□□□ -0.68
LIG3-205ENST00000585941 APCSP02743 223 aa10.82□□□□□ -0.68
LIG3-205ENST00000585941 RPLP1P05386 114 aaKnown RBP10.82□□□□□ -0.68
LIG3-205ENST00000585941 CRIP1P50238 77 aa10.82□□□□□ -0.68
LIG3-205ENST00000585941 RPS20P60866 119 aaKnown RBP10.82□□□□□ -0.68
LIG3-205ENST00000585941 HBBP68871 147 aa10.82□□□□□ -0.68
LIG3-205ENST00000585941 SRSF2Q01130 221 aaKnown RBP10.82□□□□□ -0.68
LIG3-205ENST00000585941 GFI1BQ5VTD9 330 aa10.82□□□□□ -0.68
LIG3-205ENST00000585941 TCF24Q7RTU0 167 aa10.82□□□□□ -0.68
LIG3-205ENST00000585941 RNF182Q8N6D2 247 aa10.82□□□□□ -0.68
LIG3-205ENST00000585941 GTSF1Q8WW33 167 aa10.82□□□□□ -0.68
LIG3-205ENST00000585941 C8orf49Q96NF6 230 aa10.82□□□□□ -0.68
LIG3-205ENST00000585941 C12orf57Q99622 126 aa10.82□□□□□ -0.68
LIG3-205ENST00000585941 RHPN1-AS1Q9BWJ2 59 aa10.82□□□□□ -0.68
Retrieved 100 of 20,778 RNA–protein pairs in 34.1 ms