RNA–Protein interactions for RNA: ENST00000573584.5

NUP88-207, Transcript of nucleoporin 88, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene NUP88, Length 2,916 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP88-207ENST00000573584 NHLH1Q02575 133 aa12.24□□□□□ -0.45
NUP88-207ENST00000573584 LY6G5BQ8NDX9 201 aa12.24□□□□□ -0.45
NUP88-207ENST00000573584 CSMD1Q96PZ7 3565 aa12.24□□□□□ -0.45
NUP88-207ENST00000573584 IGLV11-55A0A075B6I3 123 aa12.24□□□□□ -0.45
NUP88-207ENST00000573584 RNF151Q2KHN1 245 aa12.24□□□□□ -0.45
NUP88-207ENST00000573584 C5orf64Q2M2E5 130 aa12.24□□□□□ -0.45
NUP88-207ENST00000573584 MRPL51Q4U2R6 128 aaKnown RBP12.24□□□□□ -0.45
NUP88-207ENST00000573584 ANKRD39Q53RE8 183 aa12.24□□□□□ -0.45
NUP88-207ENST00000573584 SAPCD1Q5SSQ6 148 aa12.24□□□□□ -0.45
NUP88-207ENST00000573584 PIP4P2Q8N4L2 257 aa12.24□□□□□ -0.45
NUP88-207ENST00000573584 OR11H6Q8NGC7 330 aa12.24□□□□□ -0.45
NUP88-207ENST00000573584 ZFHX2Q9C0A1 2572 aaPredicted RBP12.23□□□□□ -0.45
NUP88-207ENST00000573584 CEACAM3P40198 252 aa12.23□□□□□ -0.45
NUP88-207ENST00000573584 RPS20P60866 119 aaKnown RBP12.23□□□□□ -0.45
NUP88-207ENST00000573584 TMEM97Q5BJF2 176 aa12.23□□□□□ -0.45
NUP88-207ENST00000573584 PRR25Q96S07 402 aa12.23□□□□□ -0.45
NUP88-207ENST00000573584 DCHS2Q6V1P9 2916 aa12.23□□□□□ -0.45
NUP88-207ENST00000573584 C7orf71A4D174 169 aa12.23□□□□□ -0.45
NUP88-207ENST00000573584 F8W735 103 aaPredicted RBP12.23□□□□□ -0.45
NUP88-207ENST00000573584 IGHV3-23P01764 117 aa12.23□□□□□ -0.45
NUP88-207ENST00000573584 EGR2P11161 476 aaPredicted RBP12.23□□□□□ -0.45
NUP88-207ENST00000573584 KLRD1Q13241 179 aa12.23□□□□□ -0.45
NUP88-207ENST00000573584 C21orf62Q9NYP8 219 aa12.23□□□□□ -0.45
NUP88-207ENST00000573584 TRAV8-6A0A0B4J262 113 aa12.22□□□□□ -0.45
NUP88-207ENST00000573584 NPIPB5A8MRT5 1133 aa12.22□□□□□ -0.45
NUP88-207ENST00000573584 LY6HO94772 140 aa12.22□□□□□ -0.45
NUP88-207ENST00000573584 FGF6P10767 208 aa12.22□□□□□ -0.45
NUP88-207ENST00000573584 RPL7P18124 248 aaKnown RBP12.22□□□□□ -0.45
NUP88-207ENST00000573584 CKS2P33552 79 aa12.22□□□□□ -0.45
NUP88-207ENST00000573584 CACNG7P62955 275 aa12.22□□□□□ -0.45
NUP88-207ENST00000573584 TWIST1Q15672 202 aa12.22□□□□□ -0.45
NUP88-207ENST00000573584 LGALS9BQ3B8N2 356 aa12.22□□□□□ -0.45
NUP88-207ENST00000573584 LGALS9CQ6DKI2 356 aa12.22□□□□□ -0.45
NUP88-207ENST00000573584 DPF1Q92782 380 aa12.22□□□□□ -0.45
NUP88-207ENST00000573584 PEF1Q9UBV8 284 aaKnown RBP12.22□□□□□ -0.45
NUP88-207ENST00000573584 HBDP02042 147 aa12.22□□□□□ -0.45
NUP88-207ENST00000573584 ZNF562Q6V9R5 426 aa12.22□□□□□ -0.45
NUP88-207ENST00000573584 ZNF48Q96MX3 618 aaPredicted RBP12.22□□□□□ -0.45
NUP88-207ENST00000573584 CST9LQ9H4G1 147 aa12.22□□□□□ -0.45
NUP88-207ENST00000573584 SMKR1H3BMG3 65 aa12.21□□□□□ -0.45
NUP88-207ENST00000573584 TCTAP57738 103 aa12.21□□□□□ -0.45
NUP88-207ENST00000573584 SEC11AP67812 179 aa12.21□□□□□ -0.45
NUP88-207ENST00000573584 Q8TAT8 98 aa12.21□□□□□ -0.45
NUP88-207ENST00000573584 ARPC1AQ92747 370 aa12.21□□□□□ -0.45
NUP88-207ENST00000573584 NCBP2LA6PVI3 153 aaKnown RBP12.21□□□□□ -0.45
NUP88-207ENST00000573584 COX8CQ7Z4L0 72 aa12.21□□□□□ -0.45
NUP88-207ENST00000573584 FER1L6-AS1Q8NA97 138 aa12.21□□□□□ -0.45
NUP88-207ENST00000573584 OR1N2Q8NGR9 330 aa12.21□□□□□ -0.45
NUP88-207ENST00000573584 RABAC1Q9UI14 185 aa12.21□□□□□ -0.45
NUP88-207ENST00000573584 IGFL4Q6B9Z1 124 aa12.21□□□□□ -0.46
NUP88-207ENST00000573584 VKORC1Q9BQB6 163 aa12.21□□□□□ -0.46
NUP88-207ENST00000573584 NPYP01303 97 aa12.2□□□□□ -0.46
NUP88-207ENST00000573584 ZNF80P51504 273 aaPredicted RBP12.2□□□□□ -0.46
NUP88-207ENST00000573584 NDPQ00604 133 aa12.2□□□□□ -0.46
NUP88-207ENST00000573584 VGLL1Q99990 258 aa12.2□□□□□ -0.46
NUP88-207ENST00000573584 THYN1Q9P016 225 aa12.2□□□□□ -0.46
NUP88-207ENST00000573584 BMI1P35226 326 aa12.2□□□□□ -0.46
NUP88-207ENST00000573584 UQCRFS1P47985 274 aa12.2□□□□□ -0.46
NUP88-207ENST00000573584 PAX8Q06710 450 aa12.2□□□□□ -0.46
NUP88-207ENST00000573584 TTC9CQ8N5M4 171 aa12.2□□□□□ -0.46
NUP88-207ENST00000573584 IFI27L1Q96BM0 104 aa12.2□□□□□ -0.46
NUP88-207ENST00000573584 ARHGAP32A7KAX9 2087 aa12.19□□□□□ -0.46
NUP88-207ENST00000573584 OCIAD2Q56VL3 154 aa12.19□□□□□ -0.46
NUP88-207ENST00000573584 BOD1L2Q8IYS8 172 aa12.19□□□□□ -0.46
NUP88-207ENST00000573584 GAGE12BA1L429 117 aa12.19□□□□□ -0.46
NUP88-207ENST00000573584 GRNP28799 593 aaKnown RBP12.19□□□□□ -0.46
NUP88-207ENST00000573584 FAM90A27PA6NNH2 459 aa12.18□□□□□ -0.46
NUP88-207ENST00000573584 HLA-DMBP28068 263 aa12.18□□□□□ -0.46
NUP88-207ENST00000573584 ARL6IP6Q8N6S5 226 aa12.18□□□□□ -0.46
NUP88-207ENST00000573584 SMAD5-AS1Q9Y6J3 95 aa12.18□□□□□ -0.46
NUP88-207ENST00000573584 IGHV3OR16-8A0A075B7F1 116 aa12.18□□□□□ -0.46
NUP88-207ENST00000573584 FBLL1A6NHQ2 334 aaKnown RBP12.18□□□□□ -0.46
NUP88-207ENST00000573584 ODF3BA8MYP8 253 aa12.18□□□□□ -0.46
NUP88-207ENST00000573584 CTSGP08311 255 aa12.18□□□□□ -0.46
NUP88-207ENST00000573584 ABCA4P78363 2273 aa12.18□□□□□ -0.46
NUP88-207ENST00000573584 ORM1P02763 201 aa12.17□□□□□ -0.46
NUP88-207ENST00000573584 PRTN3P24158 256 aa12.17□□□□□ -0.46
NUP88-207ENST00000573584 TIMD4Q96H15 378 aa12.17□□□□□ -0.46
NUP88-207ENST00000573584 SPTBN2O15020 2390 aa12.17□□□□□ -0.46
NUP88-207ENST00000573584 SMAD7O15105 426 aaKnown RBP12.17□□□□□ -0.46
NUP88-207ENST00000573584 IGHG4P01861 327 aa12.17□□□□□ -0.46
NUP88-207ENST00000573584 IGLC6P0CF74 106 aa12.17□□□□□ -0.46
NUP88-207ENST00000573584 WFDC3Q8IUB2 231 aa12.17□□□□□ -0.46
NUP88-207ENST00000573584 MSRB1Q9NZV6 116 aa12.17□□□□□ -0.46
NUP88-207ENST00000573584 IGHV3-35A0A0C4DH35 117 aa12.17□□□□□ -0.46
NUP88-207ENST00000573584 A1L4Q6 167 aa12.17□□□□□ -0.46
NUP88-207ENST00000573584 M0R1W7 72 aa12.17□□□□□ -0.46
NUP88-207ENST00000573584 NDUFS7O75251 213 aa12.17□□□□□ -0.46
NUP88-207ENST00000573584 ZNF575Q86XF7 245 aa12.17□□□□□ -0.46
NUP88-207ENST00000573584 A6NDN8 102 aa12.16□□□□□ -0.46
NUP88-207ENST00000573584 GAGE10A6NGK3 116 aa12.16□□□□□ -0.46
NUP88-207ENST00000573584 PRSS57Q6UWY2 283 aa12.16□□□□□ -0.46
NUP88-207ENST00000573584 DYNAPQ8N1N2 210 aa12.16□□□□□ -0.46
NUP88-207ENST00000573584 ANKHD1Q8IWZ3 2542 aaKnown RBP12.16□□□□□ -0.46
NUP88-207ENST00000573584 SCGB2A1O75556 95 aa12.16□□□□□ -0.46
NUP88-207ENST00000573584 PPBPP02775 128 aa12.16□□□□□ -0.46
NUP88-207ENST00000573584 OR9G4Q8NGQ1 327 aa12.16□□□□□ -0.46
NUP88-207ENST00000573584 AP1S3Q96PC3 154 aa12.16□□□□□ -0.46
NUP88-207ENST00000573584 NMUP48645 174 aa12.15□□□□□ -0.46
NUP88-207ENST00000573584 CCDC144NLQ6NUI1 221 aa12.15□□□□□ -0.46
Retrieved 100 of 20,778 RNA–protein pairs in 89.8 ms