RNA–Protein interactions for RNA: ENST00000572253.5

CCDC40-207, Transcript of coiled-coil domain containing 40, humanhuman

TSL 2

Gene CCDC40, Length 3,962 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC40-207ENST00000572253 U3KQK5 164 aa8.47□□□□□ -1.05
CCDC40-207ENST00000572253 ZFHX2Q9C0A1 2572 aaPredicted RBP8.47□□□□□ -1.05
CCDC40-207ENST00000572253 PRB4P10163 310 aaPredicted RBP8.46□□□□□ -1.05
CCDC40-207ENST00000572253 ANKRD39Q53RE8 183 aa8.46□□□□□ -1.05
CCDC40-207ENST00000572253 FER1L6-AS1Q8NA97 138 aa8.46□□□□□ -1.05
CCDC40-207ENST00000572253 OR4X2Q8NGF9 303 aa8.46□□□□□ -1.05
CCDC40-207ENST00000572253 IFI27L1Q96BM0 104 aa8.46□□□□□ -1.05
CCDC40-207ENST00000572253 HILPDAQ9Y5L2 63 aa8.46□□□□□ -1.05
CCDC40-207ENST00000572253 WDFY4Q6ZS81 3184 aa8.46□□□□□ -1.05
CCDC40-207ENST00000572253 MRPL51Q4U2R6 128 aaKnown RBP8.46□□□□□ -1.05
CCDC40-207ENST00000572253 S4R3C0 116 aa8.46□□□□□ -1.05
CCDC40-207ENST00000572253 TRAV8-6A0A0B4J262 113 aa8.46□□□□□ -1.06
CCDC40-207ENST00000572253 GAGE12BA1L429 117 aa8.46□□□□□ -1.06
CCDC40-207ENST00000572253 SMAD7O15105 426 aaKnown RBP8.46□□□□□ -1.06
CCDC40-207ENST00000572253 C21orf62Q9NYP8 219 aa8.46□□□□□ -1.06
CCDC40-207ENST00000572253 LY6LH3BQJ8 138 aa8.46□□□□□ -1.06
CCDC40-207ENST00000572253 OVOL3O00110 214 aa8.46□□□□□ -1.06
CCDC40-207ENST00000572253 MRPS12O15235 138 aaKnown RBP8.46□□□□□ -1.06
CCDC40-207ENST00000572253 PSMG4Q5JS54 123 aa8.46□□□□□ -1.06
CCDC40-207ENST00000572253 RABAC1Q9UI14 185 aa8.46□□□□□ -1.06
CCDC40-207ENST00000572253 IGKV2-40A0A087WW87 121 aaPredicted RBP8.45□□□□□ -1.06
CCDC40-207ENST00000572253 MBD3L2BA0A1B0GVZ6 204 aaPredicted RBP8.45□□□□□ -1.06
CCDC40-207ENST00000572253 H3BRM9 83 aa8.45□□□□□ -1.06
CCDC40-207ENST00000572253 IGKV2D-40P01614 121 aaPredicted RBP8.45□□□□□ -1.06
CCDC40-207ENST00000572253 KLF17Q5JT82 389 aaPredicted RBP8.45□□□□□ -1.06
CCDC40-207ENST00000572253 MAP1LC3AQ9H492 121 aa8.45□□□□□ -1.06
CCDC40-207ENST00000572253 MED13LQ71F56 2210 aa8.45□□□□□ -1.06
CCDC40-207ENST00000572253 SIVA1O15304 175 aa8.45□□□□□ -1.06
CCDC40-207ENST00000572253 FAM106CPP0CH98 169 aa8.45□□□□□ -1.06
CCDC40-207ENST00000572253 FAM106AQ4KMX7 169 aa8.45□□□□□ -1.06
CCDC40-207ENST00000572253 TIMD4Q96H15 378 aa8.45□□□□□ -1.06
CCDC40-207ENST00000572253 LOXL1Q08397 574 aaPredicted RBP8.45□□□□□ -1.06
CCDC40-207ENST00000572253 C5orf64Q2M2E5 130 aa8.45□□□□□ -1.06
CCDC40-207ENST00000572253 ABHD17AQ96GS6 310 aa8.45□□□□□ -1.06
CCDC40-207ENST00000572253 ZNF48Q96MX3 618 aaPredicted RBP8.45□□□□□ -1.06
CCDC40-207ENST00000572253 PRR25Q96S07 402 aa8.45□□□□□ -1.06
CCDC40-207ENST00000572253 NPIPB5A8MRT5 1133 aa8.44□□□□□ -1.06
CCDC40-207ENST00000572253 BOD1L2Q8IYS8 172 aa8.44□□□□□ -1.06
CCDC40-207ENST00000572253 NPBQ8NG41 125 aa8.44□□□□□ -1.06
CCDC40-207ENST00000572253 ARPC1AQ92747 370 aa8.44□□□□□ -1.06
CCDC40-207ENST00000572253 C9orf118A6NHY6 69 aa8.44□□□□□ -1.06
CCDC40-207ENST00000572253 ORM1P02763 201 aa8.44□□□□□ -1.06
CCDC40-207ENST00000572253 NMUP48645 174 aa8.44□□□□□ -1.06
CCDC40-207ENST00000572253 A0A096LNJ9 63 aa8.44□□□□□ -1.06
CCDC40-207ENST00000572253 A0A1W2PRD5 423 aa8.43□□□□□ -1.06
CCDC40-207ENST00000572253 A0A1W2PRF3 423 aa8.43□□□□□ -1.06
CCDC40-207ENST00000572253 A0A1W2PRM7 423 aa8.43□□□□□ -1.06
CCDC40-207ENST00000572253 NCBP2LA6PVI3 153 aaKnown RBP8.43□□□□□ -1.06
CCDC40-207ENST00000572253 NDUFA3O95167 84 aa8.43□□□□□ -1.06
CCDC40-207ENST00000572253 FGF6P10767 208 aa8.43□□□□□ -1.06
CCDC40-207ENST00000572253 IGLV11-55A0A075B6I3 123 aa8.43□□□□□ -1.06
CCDC40-207ENST00000572253 NPYP01303 97 aa8.43□□□□□ -1.06
CCDC40-207ENST00000572253 TCTAP57738 103 aa8.43□□□□□ -1.06
CCDC40-207ENST00000572253 CCDC144NLQ6NUI1 221 aa8.43□□□□□ -1.06
CCDC40-207ENST00000572253 H3BUT2 72 aa8.43□□□□□ -1.06
CCDC40-207ENST00000572253 ZNF672Q499Z4 452 aaPredicted RBP8.43□□□□□ -1.06
CCDC40-207ENST00000572253 SMKR1H3BMG3 65 aa8.42□□□□□ -1.06
CCDC40-207ENST00000572253 EGR2P11161 476 aaPredicted RBP8.42□□□□□ -1.06
CCDC40-207ENST00000572253 FXYD7P58549 80 aa8.42□□□□□ -1.06
CCDC40-207ENST00000572253 KIR3DS1Q14943 382 aa8.42□□□□□ -1.06
CCDC40-207ENST00000572253 COX8CQ7Z4L0 72 aa8.42□□□□□ -1.06
CCDC40-207ENST00000572253 OR11H6Q8NGC7 330 aa8.42□□□□□ -1.06
CCDC40-207ENST00000572253 COL6A3P12111 3177 aa8.42□□□□□ -1.06
CCDC40-207ENST00000572253 ZNF562Q6V9R5 426 aa8.42□□□□□ -1.06
CCDC40-207ENST00000572253 FABP5P3A8MUU1 101 aa8.42□□□□□ -1.06
CCDC40-207ENST00000572253 NDUFS7O75251 213 aa8.42□□□□□ -1.06
CCDC40-207ENST00000572253 Q8TAT8 98 aa8.42□□□□□ -1.06
CCDC40-207ENST00000572253 FANCD2OSQ96PS1 177 aa8.42□□□□□ -1.06
CCDC40-207ENST00000572253 NXT2Q9NPJ8 142 aaKnown RBP8.42□□□□□ -1.06
CCDC40-207ENST00000572253 ABCA4P78363 2273 aa8.42□□□□□ -1.06
CCDC40-207ENST00000572253 A0A0G2JLM5 398 aa8.41□□□□□ -1.06
CCDC40-207ENST00000572253 LINC01559Q495D7 138 aa8.41□□□□□ -1.06
CCDC40-207ENST00000572253 PRSS1P07477 247 aa8.41□□□□□ -1.06
CCDC40-207ENST00000572253 SCGB2A2Q13296 93 aa8.41□□□□□ -1.06
CCDC40-207ENST00000572253 TTC9CQ8N5M4 171 aa8.41□□□□□ -1.06
CCDC40-207ENST00000572253 OR2K2Q8NGT1 345 aa8.41□□□□□ -1.06
CCDC40-207ENST00000572253 CFHR4Q92496 578 aa8.41□□□□□ -1.06
CCDC40-207ENST00000572253 K7EP34 96 aa8.41□□□□□ -1.06
CCDC40-207ENST00000572253 M0R1W7 72 aa8.41□□□□□ -1.06
CCDC40-207ENST00000572253 IGHV3-23P01764 117 aa8.41□□□□□ -1.06
CCDC40-207ENST00000572253 SRSF2Q01130 221 aaKnown RBP8.41□□□□□ -1.06
CCDC40-207ENST00000572253 LY6G5BQ8NDX9 201 aa8.41□□□□□ -1.06
CCDC40-207ENST00000572253 IGFBPL1Q8WX77 278 aa8.41□□□□□ -1.06
CCDC40-207ENST00000572253 DOPEY2Q9Y3R5 2298 aa8.41□□□□□ -1.06
CCDC40-207ENST00000572253 IGLC6P0CF74 106 aa8.4□□□□□ -1.06
CCDC40-207ENST00000572253 RAB9AP51151 201 aa8.4□□□□□ -1.06
CCDC40-207ENST00000572253 BCL6BQ8N143 479 aaPredicted RBP8.4□□□□□ -1.06
CCDC40-207ENST00000572253 LINC01560Q8TB33 94 aa8.4□□□□□ -1.06
CCDC40-207ENST00000572253 C18orf15Q96N68 181 aa8.4□□□□□ -1.06
CCDC40-207ENST00000572253 LEPP41159 167 aa8.4□□□□□ -1.06
CCDC40-207ENST00000572253 WFDC3Q8IUB2 231 aa8.4□□□□□ -1.06
CCDC40-207ENST00000572253 OR5A1Q8NGJ0 315 aa8.4□□□□□ -1.06
CCDC40-207ENST00000572253 RAB37Q96AX2 223 aa8.4□□□□□ -1.06
CCDC40-207ENST00000572253 VGLL1Q99990 258 aa8.4□□□□□ -1.06
CCDC40-207ENST00000572253 VKORC1Q9BQB6 163 aa8.4□□□□□ -1.06
CCDC40-207ENST00000572253 NPFFR1Q9GZQ6 430 aa8.4□□□□□ -1.06
CCDC40-207ENST00000572253 CACNA1BQ00975 2339 aa8.4□□□□□ -1.06
CCDC40-207ENST00000572253 FCER1GP30273 86 aa8.4□□□□□ -1.07
CCDC40-207ENST00000572253 KLRD1Q13241 179 aa8.4□□□□□ -1.07
CCDC40-207ENST00000572253 WNK2Q9Y3S1 2297 aa8.4□□□□□ -1.07
Retrieved 100 of 20,778 RNA–protein pairs in 41 ms