RNA–Protein interactions for RNA: ENST00000563418.2

CLK3-212, Transcript of CDC like kinase 3, humanhuman

TSL 3

Gene CLK3, Length 10,498 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-212ENST00000563418 TRGV5A0A0B4J1U4 118 aa5.06□□□□□ -1.6
CLK3-212ENST00000563418 FAM74A4Q5TZK3 123 aa5.06□□□□□ -1.6
CLK3-212ENST00000563418 TRGV11A0A075B6L2 103 aa5.06□□□□□ -1.6
CLK3-212ENST00000563418 CXCL10P02778 98 aa5.06□□□□□ -1.6
CLK3-212ENST00000563418 LINC00312Q9Y6C7 94 aa5.06□□□□□ -1.6
CLK3-212ENST00000563418 HCFC1P51610 2035 aa5.06□□□□□ -1.6
CLK3-212ENST00000563418 KIAA1549Q9HCM3 1950 aa5.06□□□□□ -1.6
CLK3-212ENST00000563418 SCN10AQ9Y5Y9 1956 aa5.06□□□□□ -1.6
CLK3-212ENST00000563418 BRWD1Q9NSI6 2320 aa5.06□□□□□ -1.6
CLK3-212ENST00000563418 ARHGAP21Q5T5U3 1957 aa5.06□□□□□ -1.6
CLK3-212ENST00000563418 NPPCP23582 126 aa5.06□□□□□ -1.6
CLK3-212ENST00000563418 RASL10AQ92737 203 aa5.06□□□□□ -1.6
CLK3-212ENST00000563418 RTTNQ86VV8 2226 aa5.06□□□□□ -1.6
CLK3-212ENST00000563418 USF3Q68DE3 2245 aa5.06□□□□□ -1.6
CLK3-212ENST00000563418 P0DMU3 169 aa5.05□□□□□ -1.6
CLK3-212ENST00000563418 FAM231AP0DMU4 169 aa5.05□□□□□ -1.6
CLK3-212ENST00000563418 FAM231CP0DMU5 169 aa5.05□□□□□ -1.6
CLK3-212ENST00000563418 SMIM2Q9BVW6 85 aa5.05□□□□□ -1.6
CLK3-212ENST00000563418 NUP210Q8TEM1 1887 aaPredicted RBP5.05□□□□□ -1.6
CLK3-212ENST00000563418 IGHV1-69DA0A0B4J2H0 117 aa5.05□□□□□ -1.6
CLK3-212ENST00000563418 FXYD7P58549 80 aa5.05□□□□□ -1.6
CLK3-212ENST00000563418 C2orf91Q6ZV80 131 aa5.05□□□□□ -1.6
CLK3-212ENST00000563418 LINC00526Q96FQ7 95 aa5.05□□□□□ -1.6
CLK3-212ENST00000563418 LSM4Q9Y4Z0 139 aaKnown RBP5.05□□□□□ -1.6
CLK3-212ENST00000563418 RPS28P62857 69 aaKnown RBP5.05□□□□□ -1.6
CLK3-212ENST00000563418 TEX36Q5VZQ5 186 aa5.05□□□□□ -1.6
CLK3-212ENST00000563418 FOXL2NBQ6ZUU3 175 aa5.05□□□□□ -1.6
CLK3-212ENST00000563418 KLF14Q8TD94 323 aaPredicted RBP5.05□□□□□ -1.6
CLK3-212ENST00000563418 H3BQ85 93 aa5.05□□□□□ -1.6
CLK3-212ENST00000563418 MORN5Q5VZ52 161 aa5.05□□□□□ -1.6
CLK3-212ENST00000563418 SIGLEC9Q9Y336 463 aa5.05□□□□□ -1.6
CLK3-212ENST00000563418 A0A1B0GXF2 115 aa5.05□□□□□ -1.6
CLK3-212ENST00000563418 TCL1BO95988 128 aa5.05□□□□□ -1.6
CLK3-212ENST00000563418 CCL3P10147 92 aa5.05□□□□□ -1.6
CLK3-212ENST00000563418 MALP21145 153 aa5.05□□□□□ -1.6
CLK3-212ENST00000563418 PRR20EP86478 221 aa5.05□□□□□ -1.6
CLK3-212ENST00000563418 PRR20CP86479 221 aa5.05□□□□□ -1.6
CLK3-212ENST00000563418 PRR20DP86480 221 aa5.05□□□□□ -1.6
CLK3-212ENST00000563418 PRR20BP86481 221 aa5.05□□□□□ -1.6
CLK3-212ENST00000563418 PRR20AP86496 221 aa5.05□□□□□ -1.6
CLK3-212ENST00000563418 METRNQ9UJH8 293 aa5.05□□□□□ -1.6
CLK3-212ENST00000563418 LYRM9A8MSI8 78 aa5.05□□□□□ -1.6
CLK3-212ENST00000563418 IL17RELQ6ZVW7 336 aa5.05□□□□□ -1.6
CLK3-212ENST00000563418 Q8TCH9 128 aa5.05□□□□□ -1.6
CLK3-212ENST00000563418 LINC00694P0DN24 101 aa5.05□□□□□ -1.6
CLK3-212ENST00000563418 MNX1P50219 401 aaPredicted RBP5.05□□□□□ -1.6
CLK3-212ENST00000563418 EEF1AKMT3Q96AZ1 226 aa5.05□□□□□ -1.6
CLK3-212ENST00000563418 TP53TG3Q9ULZ0 132 aa5.05□□□□□ -1.6
CLK3-212ENST00000563418 Q8N1Y9 231 aa5.04□□□□□ -1.6
CLK3-212ENST00000563418 SERP2Q8N6R1 65 aa5.04□□□□□ -1.6
CLK3-212ENST00000563418 C21orf62Q9NYP8 219 aa5.04□□□□□ -1.6
CLK3-212ENST00000563418 SDK1Q7Z5N4 2213 aa5.04□□□□□ -1.6
CLK3-212ENST00000563418 ABCA7Q8IZY2 2146 aa5.04□□□□□ -1.6
CLK3-212ENST00000563418 CRYGBP07316 175 aa5.04□□□□□ -1.6
CLK3-212ENST00000563418 FOXF2Q12947 444 aa5.04□□□□□ -1.6
CLK3-212ENST00000563418 TMEM196Q5HYL7 178 aa5.04□□□□□ -1.6
CLK3-212ENST00000563418 EXOC3-AS1Q8N2X6 119 aa5.04□□□□□ -1.6
CLK3-212ENST00000563418 WIPF3A6NGB9 483 aa5.04□□□□□ -1.6
CLK3-212ENST00000563418 F6UB75 175 aa5.04□□□□□ -1.6
CLK3-212ENST00000563418 CHCHD2P9Q5T1J5 151 aaPredicted RBP5.04□□□□□ -1.6
CLK3-212ENST00000563418 C16orf47Q6ZP98 133 aaPredicted RBP5.04□□□□□ -1.6
CLK3-212ENST00000563418 PEAR1Q5VY43 1037 aaPredicted RBP5.04□□□□□ -1.6
CLK3-212ENST00000563418 LILRA6Q6PI73 481 aa5.04□□□□□ -1.6
CLK3-212ENST00000563418 PKIGQ9Y2B9 76 aa5.04□□□□□ -1.6
CLK3-212ENST00000563418 Q6P435 159 aa5.04□□□□□ -1.6
CLK3-212ENST00000563418 FAM19A5Q7Z5A7 132 aaPredicted RBP5.04□□□□□ -1.6
CLK3-212ENST00000563418 OVOL1O14753 267 aa5.04□□□□□ -1.6
CLK3-212ENST00000563418 APELAP0DMC3 54 aa5.04□□□□□ -1.6
CLK3-212ENST00000563418 LYPD6Q86Y78 171 aa5.04□□□□□ -1.6
CLK3-212ENST00000563418 SHANK2-AS3Q9BTD1 123 aa5.04□□□□□ -1.6
CLK3-212ENST00000563418 LGALS9O00182 355 aa5.04□□□□□ -1.6
CLK3-212ENST00000563418 SNRPD3P62318 126 aaKnown RBP5.04□□□□□ -1.6
CLK3-212ENST00000563418 NCOA6Q14686 2063 aaPredicted RBP5.03□□□□□ -1.6
CLK3-212ENST00000563418 IGKV1-6A0A0C4DH72 117 aa5.03□□□□□ -1.6
CLK3-212ENST00000563418 TRBV6-1A0A0K0K1D8 114 aa5.03□□□□□ -1.6
CLK3-212ENST00000563418 NTN3O00634 580 aaPredicted RBP5.03□□□□□ -1.6
CLK3-212ENST00000563418 SEC61GP60059 68 aa5.03□□□□□ -1.6
CLK3-212ENST00000563418 SMKR1H3BMG3 65 aa5.03□□□□□ -1.6
CLK3-212ENST00000563418 RNASE2P10153 161 aaKnown RBP5.03□□□□□ -1.6
CLK3-212ENST00000563418 FXYD5Q96DB9 178 aa5.03□□□□□ -1.6
CLK3-212ENST00000563418 RP1L1Q8IWN7 2480 aaPredicted RBP5.03□□□□□ -1.6
CLK3-212ENST00000563418 LINC00473A8K010 186 aa5.03□□□□□ -1.6
CLK3-212ENST00000563418 TMEM167AQ8TBQ9 72 aa5.03□□□□□ -1.6
CLK3-212ENST00000563418 SRXN1Q9BYN0 137 aa5.03□□□□□ -1.6
CLK3-212ENST00000563418 COX7A1P24310 79 aa5.03□□□□□ -1.6
CLK3-212ENST00000563418 DEFB103AP81534 67 aa5.03□□□□□ -1.6
CLK3-212ENST00000563418 LINC00173Q6ZV60 143 aa5.03□□□□□ -1.6
CLK3-212ENST00000563418 DEFB127Q9H1M4 99 aa5.03□□□□□ -1.6
CLK3-212ENST00000563418 TP53TG1Q9Y2A0 90 aa5.03□□□□□ -1.6
CLK3-212ENST00000563418 PRRG2O14669 202 aa5.03□□□□□ -1.6
CLK3-212ENST00000563418 IGKV1-39P01597 117 aa5.03□□□□□ -1.6
CLK3-212ENST00000563418 IGKV1D-39P04432 117 aa5.03□□□□□ -1.6
CLK3-212ENST00000563418 TMEM240Q5SV17 173 aa5.03□□□□□ -1.6
CLK3-212ENST00000563418 ZNF826PQ6ZT77 177 aa5.03□□□□□ -1.6
CLK3-212ENST00000563418 FGFBP3Q8TAT2 258 aa5.03□□□□□ -1.6
CLK3-212ENST00000563418 MLST8Q9BVC4 326 aa5.03□□□□□ -1.6
CLK3-212ENST00000563418 PMS2P5A8MQ11 134 aa5.03□□□□□ -1.6
CLK3-212ENST00000563418 EML5Q05BV3 1969 aa5.03□□□□□ -1.61
CLK3-212ENST00000563418 IGHV1-45A0A0A0MS14 117 aa5.02□□□□□ -1.61
CLK3-212ENST00000563418 ZNF474Q6S9Z5 364 aaPredicted RBP5.02□□□□□ -1.61
Retrieved 100 of 20,778 RNA–protein pairs in 46.1 ms