RNA–Protein interactions for RNA: ENST00000562420.1

VPS35-203, Transcript of VPS35, retromer complex component, humanhuman

TSL 2

Gene VPS35, Length 740 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-203ENST00000562420 NYNRINQ9P2P1 1898 aaKnown RBP2.56□□□□□ -2
VPS35-203ENST00000562420 TNRC6AQ8NDV7 1962 aaKnown RBP2.56□□□□□ -2
VPS35-203ENST00000562420 RALGAPA1Q6GYQ0 2036 aa2.56□□□□□ -2
VPS35-203ENST00000562420 GOLGB1Q14789 3259 aaKnown RBP2.55□□□□□ -2
VPS35-203ENST00000562420 IGLV3-22A0A075B6J6 115 aa2.55□□□□□ -2
VPS35-203ENST00000562420 TRBV19A0A075B6N1 114 aa2.55□□□□□ -2
VPS35-203ENST00000562420 SMIM27A0A1W2PRY6 76 aa2.55□□□□□ -2
VPS35-203ENST00000562420 IZUMO1RA6ND01 250 aa2.55□□□□□ -2
VPS35-203ENST00000562420 ZFP92A6NM28 416 aa2.55□□□□□ -2
VPS35-203ENST00000562420 J3QQQ9 107 aa2.55□□□□□ -2
VPS35-203ENST00000562420 M0R129 80 aa2.55□□□□□ -2
VPS35-203ENST00000562420 NPYP01303 97 aa2.55□□□□□ -2
VPS35-203ENST00000562420 GYPBP06028 91 aa2.55□□□□□ -2
VPS35-203ENST00000562420 CD55P08174 381 aa2.55□□□□□ -2
VPS35-203ENST00000562420 IFI6P09912 130 aa2.55□□□□□ -2
VPS35-203ENST00000562420 FGF6P10767 208 aa2.55□□□□□ -2
VPS35-203ENST00000562420 CTLA4P16410 223 aa2.55□□□□□ -2
VPS35-203ENST00000562420 CBLN1P23435 193 aa2.55□□□□□ -2
VPS35-203ENST00000562420 PFN2P35080 140 aa2.55□□□□□ -2
VPS35-203ENST00000562420 BRCA1P38398 1863 aaKnown RBP2.55□□□□□ -2
VPS35-203ENST00000562420 RBM11P57052 281 aaKnown RBP2.55□□□□□ -2
VPS35-203ENST00000562420 CCL8P80075 99 aa2.55□□□□□ -2
VPS35-203ENST00000562420 QRFPP83859 136 aa2.55□□□□□ -2
VPS35-203ENST00000562420 RLFQ13129 1914 aa2.55□□□□□ -2
VPS35-203ENST00000562420 ECSCRQ19T08 205 aa2.55□□□□□ -2
VPS35-203ENST00000562420 DEFB121Q5J5C9 76 aa2.55□□□□□ -2
VPS35-203ENST00000562420 EBLN2Q6P2I7 272 aa2.55□□□□□ -2
VPS35-203ENST00000562420 Q6ZRU5 148 aa2.55□□□□□ -2
VPS35-203ENST00000562420 AAED1Q7RTV5 226 aa2.55□□□□□ -2
VPS35-203ENST00000562420 FAM19A1Q7Z5A9 133 aa2.55□□□□□ -2
VPS35-203ENST00000562420 TRAPPC6BQ86SZ2 158 aa2.55□□□□□ -2
VPS35-203ENST00000562420 ZNF721Q8TF20 911 aa2.55□□□□□ -2
VPS35-203ENST00000562420 ZNF488Q96MN9 340 aa2.55□□□□□ -2
VPS35-203ENST00000562420 AMELYQ99218 206 aa2.55□□□□□ -2
VPS35-203ENST00000562420 ZNF256Q9Y2P7 627 aaPredicted RBP2.55□□□□□ -2
VPS35-203ENST00000562420 KCNE3Q9Y6H6 103 aa2.55□□□□□ -2
VPS35-203ENST00000562420 SERP1Q9Y6X1 66 aa2.55□□□□□ -2
VPS35-203ENST00000562420 NINQ8N4C6 2090 aa2.54□□□□□ -2
VPS35-203ENST00000562420 DENND4CQ5VZ89 1909 aa2.54□□□□□ -2
VPS35-203ENST00000562420 TMEM131Q92545 1883 aa2.54□□□□□ -2
VPS35-203ENST00000562420 SIP14410 1827 aa2.54□□□□□ -2
VPS35-203ENST00000562420 UTRNP46939 3433 aa2.54□□□□□ -2
VPS35-203ENST00000562420 TRAV2A0A0B4J234 112 aa2.54□□□□□ -2
VPS35-203ENST00000562420 TRBV7-6A0A0J9YX20 115 aa2.54□□□□□ -2
VPS35-203ENST00000562420 MYMXA0A1B0GTQ4 84 aa2.54□□□□□ -2
VPS35-203ENST00000562420 MYBPHLA2RUH7 354 aa2.54□□□□□ -2
VPS35-203ENST00000562420 GRIFINA4D1Z8 144 aa2.54□□□□□ -2
VPS35-203ENST00000562420 A8MU10 97 aa2.54□□□□□ -2
VPS35-203ENST00000562420 A8MWL6 223 aa2.54□□□□□ -2
VPS35-203ENST00000562420 LOC730098B7Z3J9 87 aa2.54□□□□□ -2
VPS35-203ENST00000562420 SMKR1H3BMG3 65 aa2.54□□□□□ -2
VPS35-203ENST00000562420 SLC25A14O95258 325 aaPredicted RBP2.54□□□□□ -2
VPS35-203ENST00000562420 IL4P05112 153 aa2.54□□□□□ -2
VPS35-203ENST00000562420 KRTAP1-4P0C5Y4 121 aa2.54□□□□□ -2
VPS35-203ENST00000562420 ASAH2BP0C7U1 165 aa2.54□□□□□ -2
VPS35-203ENST00000562420 COX6A1P12074 109 aa2.54□□□□□ -2
VPS35-203ENST00000562420 FXYD6P3P58550 94 aa2.54□□□□□ -2
VPS35-203ENST00000562420 CCL14Q16627 93 aa2.54□□□□□ -2
VPS35-203ENST00000562420 VMA21Q3ZAQ7 101 aa2.54□□□□□ -2
VPS35-203ENST00000562420 LINC00242Q5T6M2 205 aa2.54□□□□□ -2
VPS35-203ENST00000562420 Q5XG85 94 aa2.54□□□□□ -2
VPS35-203ENST00000562420 FAM219BQ5XKK7 198 aa2.54□□□□□ -2
VPS35-203ENST00000562420 C22orf39Q6P5X5 142 aa2.54□□□□□ -2
VPS35-203ENST00000562420 RPS27LQ71UM5 84 aaKnown RBP2.54□□□□□ -2
VPS35-203ENST00000562420 DEFB132Q7Z7B7 95 aa2.54□□□□□ -2
VPS35-203ENST00000562420 HMGN2P46Q86SG4 172 aa2.54□□□□□ -2
VPS35-203ENST00000562420 LINC00643Q86TS7 51 aa2.54□□□□□ -2
VPS35-203ENST00000562420 SLC22A24Q8N4F4 322 aa2.54□□□□□ -2
VPS35-203ENST00000562420 OR5C1Q8NGR4 320 aa2.54□□□□□ -2
VPS35-203ENST00000562420 FLVCR1-AS1Q8TAF5 88 aa2.54□□□□□ -2
VPS35-203ENST00000562420 LRRC29Q8WV35 223 aa2.54□□□□□ -2
VPS35-203ENST00000562420 IFI27L1Q96BM0 104 aa2.54□□□□□ -2
VPS35-203ENST00000562420 NMNAT3Q96T66 252 aa2.54□□□□□ -2
VPS35-203ENST00000562420 TRGV9Q99603 122 aa2.54□□□□□ -2
VPS35-203ENST00000562420 HDHD3Q9BSH5 251 aaPredicted RBP2.54□□□□□ -2
VPS35-203ENST00000562420 PLA2G12AQ9BZM1 189 aa2.54□□□□□ -2
VPS35-203ENST00000562420 RNASE7Q9H1E1 156 aaKnown RBP2.54□□□□□ -2
VPS35-203ENST00000562420 DYNLRB1Q9NP97 96 aa2.54□□□□□ -2
VPS35-203ENST00000562420 COL4A1P02462 1669 aa2.53□□□□□ -2
VPS35-203ENST00000562420 ATRXP46100 2492 aa2.53□□□□□ -2
VPS35-203ENST00000562420 SSC5DA1L4H1 1573 aa2.53□□□□□ -2
VPS35-203ENST00000562420 MIA3Q5JRA6 1907 aa2.53□□□□□ -2
VPS35-203ENST00000562420 A0A0A6YYD4 124 aa2.53□□□□□ -2
VPS35-203ENST00000562420 TRGV5A0A0B4J1U4 118 aa2.53□□□□□ -2
VPS35-203ENST00000562420 TRAV17A0A0B4J275 112 aa2.53□□□□□ -2
VPS35-203ENST00000562420 LOC107984640A0A0U1RRK4 108 aa2.53□□□□□ -2
VPS35-203ENST00000562420 TCRBV4S1A1TA0A5B7 111 aa2.53□□□□□ -2
VPS35-203ENST00000562420 SRRM4A7MD48 611 aaKnown RBP2.53□□□□□ -2
VPS35-203ENST00000562420 C11orf94C9JXX5 98 aa2.53□□□□□ -2
VPS35-203ENST00000562420 F2Z2F3 143 aa2.53□□□□□ -2
VPS35-203ENST00000562420 NDUFC1O43677 76 aa2.53□□□□□ -2
VPS35-203ENST00000562420 LYZL6O75951 148 aa2.53□□□□□ -2
VPS35-203ENST00000562420 PPYP01298 95 aa2.53□□□□□ -2
VPS35-203ENST00000562420 IGKCP01834 107 aa2.53□□□□□ -2
VPS35-203ENST00000562420 MDKP21741 143 aaPredicted RBP2.53□□□□□ -2
VPS35-203ENST00000562420 AQP1P29972 269 aa2.53□□□□□ -2
VPS35-203ENST00000562420 SUB1P53999 127 aaKnown RBP eCLIP2.53□□□□□ -2
VPS35-203ENST00000562420 UBE2D3P61077 147 aa2.53□□□□□ -2
VPS35-203ENST00000562420 PPP1CAP62136 330 aa2.53□□□□□ -2
VPS35-203ENST00000562420 UBE2D2P62837 147 aa2.53□□□□□ -2
Retrieved 100 of 20,778 RNA–protein pairs in 46.6 ms