RNA–Protein interactions for RNA: ENST00000561818.1

VPS39-204, Transcript of VPS39, HOPS complex subunit, humanhuman

TSL 3

Gene VPS39, Length 537 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-204ENST00000561818 SNRPEP62304 92 aaKnown RBP5.8□□□□□ -1.48
VPS39-204ENST00000561818 SNRPD3P62318 126 aaKnown RBP5.8□□□□□ -1.48
VPS39-204ENST00000561818 HIST1H1AQ02539 215 aaPredicted RBP5.8□□□□□ -1.48
VPS39-204ENST00000561818 FBLN7Q53RD9 439 aa5.8□□□□□ -1.48
VPS39-204ENST00000561818 PRNTQ86SH4 94 aa5.8□□□□□ -1.48
VPS39-204ENST00000561818 ZFP82Q8N141 532 aa5.8□□□□□ -1.48
VPS39-204ENST00000561818 MYOZ3Q8TDC0 251 aa5.8□□□□□ -1.48
VPS39-204ENST00000561818 GLMPQ8WWB7 406 aa5.8□□□□□ -1.48
VPS39-204ENST00000561818 NRGNQ92686 78 aa5.8□□□□□ -1.48
VPS39-204ENST00000561818 C16orf92Q96LL3 132 aa5.8□□□□□ -1.48
VPS39-204ENST00000561818 RNASE7Q9H1E1 156 aaKnown RBP5.8□□□□□ -1.48
VPS39-204ENST00000561818 CLPSL1A2RUU4 121 aa5.79□□□□□ -1.48
VPS39-204ENST00000561818 PGPEP1LA6NFU8 196 aa5.79□□□□□ -1.48
VPS39-204ENST00000561818 FABP5P3A8MUU1 101 aa5.79□□□□□ -1.48
VPS39-204ENST00000561818 HOXA3O43365 443 aaPredicted RBP5.79□□□□□ -1.48
VPS39-204ENST00000561818 APCSP02743 223 aa5.79□□□□□ -1.48
VPS39-204ENST00000561818 CRISP2P16562 243 aa5.79□□□□□ -1.48
VPS39-204ENST00000561818 SMCPP49901 116 aaPredicted RBP5.79□□□□□ -1.48
VPS39-204ENST00000561818 ZNF138P52744 262 aa5.79□□□□□ -1.48
VPS39-204ENST00000561818 NDUFA6P56556 154 aa5.79□□□□□ -1.48
VPS39-204ENST00000561818 GNG5P63218 68 aa5.79□□□□□ -1.48
VPS39-204ENST00000561818 Q0VG73 95 aa5.79□□□□□ -1.48
VPS39-204ENST00000561818 OR5I1Q13606 314 aa5.79□□□□□ -1.48
VPS39-204ENST00000561818 LCN12Q6JVE5 192 aa5.79□□□□□ -1.48
VPS39-204ENST00000561818 PRR27Q6MZM9 219 aa5.79□□□□□ -1.48
VPS39-204ENST00000561818 C9orf47Q6ZRZ4 202 aa5.79□□□□□ -1.48
VPS39-204ENST00000561818 C8orf86Q6ZUL3 223 aa5.79□□□□□ -1.48
VPS39-204ENST00000561818 EXOC3-AS1Q8N2X6 119 aa5.79□□□□□ -1.48
VPS39-204ENST00000561818 OR2D3Q8NGH3 330 aa5.79□□□□□ -1.48
VPS39-204ENST00000561818 C4orf3Q8WVX3 66 aa5.79□□□□□ -1.48
VPS39-204ENST00000561818 ODF3Q96PU9 254 aa5.79□□□□□ -1.48
VPS39-204ENST00000561818 PRR25Q96S07 402 aa5.79□□□□□ -1.48
VPS39-204ENST00000561818 NEU1Q99519 415 aa5.79□□□□□ -1.48
VPS39-204ENST00000561818 MRPL18Q9H0U6 180 aaKnown RBP5.79□□□□□ -1.48
VPS39-204ENST00000561818 KMT2BQ9UMN6 2715 aaPredicted RBP5.79□□□□□ -1.48
VPS39-204ENST00000561818 ABCA1O95477 2261 aa5.78□□□□□ -1.48
VPS39-204ENST00000561818 SMG1Q96Q15 3661 aaKnown RBP5.78□□□□□ -1.48
VPS39-204ENST00000561818 MED13LQ71F56 2210 aa5.78□□□□□ -1.48
VPS39-204ENST00000561818 TRAV34A0A0B4J273 112 aa5.78□□□□□ -1.48
VPS39-204ENST00000561818 A0A1B0GUT8 65 aa5.78□□□□□ -1.48
VPS39-204ENST00000561818 SLC17A3O00476 420 aa5.78□□□□□ -1.48
VPS39-204ENST00000561818 PHOX2AO14813 284 aa5.78□□□□□ -1.48
VPS39-204ENST00000561818 IGLV2-11P01706 119 aa5.78□□□□□ -1.48
VPS39-204ENST00000561818 IGHV3-23P01764 117 aa5.78□□□□□ -1.48
VPS39-204ENST00000561818 ESDP10768 282 aa5.78□□□□□ -1.48
VPS39-204ENST00000561818 PMCHP20382 165 aa5.78□□□□□ -1.48
VPS39-204ENST00000561818 CMC4P56277 68 aaPredicted RBP5.78□□□□□ -1.48
VPS39-204ENST00000561818 BLCAPP62952 87 aa5.78□□□□□ -1.48
VPS39-204ENST00000561818 UNQ5830/PRO19650/PRO19816Q6UY13 95 aa5.78□□□□□ -1.48
VPS39-204ENST00000561818 SMIM15Q7Z3B0 74 aa5.78□□□□□ -1.48
VPS39-204ENST00000561818 KRTAP1-3Q8IUG1 177 aa5.78□□□□□ -1.48
VPS39-204ENST00000561818 GATD1Q8NB37 220 aa5.78□□□□□ -1.48
VPS39-204ENST00000561818 ZNF702PQ9H963 129 aa5.78□□□□□ -1.48
VPS39-204ENST00000561818 SMPXQ9UHP9 88 aa5.78□□□□□ -1.48
VPS39-204ENST00000561818 LAMTOR2Q9Y2Q5 125 aa5.78□□□□□ -1.48
VPS39-204ENST00000561818 DCHS2Q6V1P9 2916 aa5.78□□□□□ -1.48
VPS39-204ENST00000561818 A0A1B0GUS0 222 aa5.77□□□□□ -1.49
VPS39-204ENST00000561818 A0A1B0GXF2 115 aa5.77□□□□□ -1.49
VPS39-204ENST00000561818 TMEM189A5PLL7 270 aa5.77□□□□□ -1.49
VPS39-204ENST00000561818 LINC01548A6NM66 108 aa5.77□□□□□ -1.49
VPS39-204ENST00000561818 PPBPP02775 128 aa5.77□□□□□ -1.49
VPS39-204ENST00000561818 MED14OSP0DP75 135 aa5.77□□□□□ -1.49
VPS39-204ENST00000561818 FOSL1P15407 271 aa5.77□□□□□ -1.49
VPS39-204ENST00000561818 TSPOP30536 169 aa5.77□□□□□ -1.49
VPS39-204ENST00000561818 KRTAP10-9P60411 292 aa5.77□□□□□ -1.49
VPS39-204ENST00000561818 RAB4BP61018 213 aa5.77□□□□□ -1.49
VPS39-204ENST00000561818 HIST3H2BBQ8N257 126 aa5.77□□□□□ -1.49
VPS39-204ENST00000561818 ZNF738Q8NE65 137 aa5.77□□□□□ -1.49
VPS39-204ENST00000561818 NUP35Q8NFH5 326 aa5.77□□□□□ -1.49
VPS39-204ENST00000561818 LINC00479Q96M42 142 aa5.77□□□□□ -1.49
VPS39-204ENST00000561818 NOL4LQ96MY1 436 aaPredicted RBP5.77□□□□□ -1.49
VPS39-204ENST00000561818 RHPN1-AS1Q9BWJ2 59 aa5.77□□□□□ -1.49
VPS39-204ENST00000561818 AURKAIP1Q9NWT8 199 aaPredicted RBP5.77□□□□□ -1.49
VPS39-204ENST00000561818 S4R3C0 116 aa5.77□□□□□ -1.49
VPS39-204ENST00000561818 TRAV21A0A0B4J279 112 aa5.76□□□□□ -1.49
VPS39-204ENST00000561818 SH2D7A6NKC9 451 aaPredicted RBP5.76□□□□□ -1.49
VPS39-204ENST00000561818 DUSP14O95147 198 aaKnown RBP5.76□□□□□ -1.49
VPS39-204ENST00000561818 RNASE1P07998 156 aaKnown RBP5.76□□□□□ -1.49
VPS39-204ENST00000561818 CTRLP40313 264 aa5.76□□□□□ -1.49
VPS39-204ENST00000561818 CACNG7P62955 275 aa5.76□□□□□ -1.49
VPS39-204ENST00000561818 LINC01559Q495D7 138 aa5.76□□□□□ -1.49
VPS39-204ENST00000561818 TMEM136Q6ZRR5 245 aa5.76□□□□□ -1.49
VPS39-204ENST00000561818 BAGE3Q86Y29 109 aa5.76□□□□□ -1.49
VPS39-204ENST00000561818 LINC00518Q8N0U6 118 aa5.76□□□□□ -1.49
VPS39-204ENST00000561818 SIGLECL1Q8N7X8 197 aa5.76□□□□□ -1.49
VPS39-204ENST00000561818 DPF1Q92782 380 aa5.76□□□□□ -1.49
VPS39-204ENST00000561818 CNFNQ9BYD5 112 aa5.76□□□□□ -1.49
VPS39-204ENST00000561818 C16orf95Q9H693 158 aa5.76□□□□□ -1.49
VPS39-204ENST00000561818 SMAD5-AS1Q9Y6J3 95 aa5.76□□□□□ -1.49
VPS39-204ENST00000561818 TRAV25A0A0B4J276 109 aa5.75□□□□□ -1.49
VPS39-204ENST00000561818 LINC01619G3V211 115 aa5.75□□□□□ -1.49
VPS39-204ENST00000561818 M0R3E3 92 aa5.75□□□□□ -1.49
VPS39-204ENST00000561818 NDUFA7O95182 113 aa5.75□□□□□ -1.49
VPS39-204ENST00000561818 PPP1R17O96001 155 aa5.75□□□□□ -1.49
VPS39-204ENST00000561818 OR5AL1P0C617 328 aa5.75□□□□□ -1.49
VPS39-204ENST00000561818 SRD5A1P18405 259 aa5.75□□□□□ -1.49
VPS39-204ENST00000561818 CBLN1P23435 193 aa5.75□□□□□ -1.49
VPS39-204ENST00000561818 LEPP41159 167 aa5.75□□□□□ -1.49
VPS39-204ENST00000561818 RPL11P62913 178 aaKnown RBP5.75□□□□□ -1.49
VPS39-204ENST00000561818 KLF5Q13887 457 aaPredicted RBP5.75□□□□□ -1.49
Retrieved 100 of 20,778 RNA–protein pairs in 61.8 ms