RNA–Protein interactions for RNA: ENST00000559844.5

SNX1-208, Transcript of sorting nexin 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SNX1, Length 1,971 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SNX1-208ENST00000559844 SRSF2Q01130 221 aaKnown RBP13.74□□□□□ -0.21
SNX1-208ENST00000559844 GPR61Q9BZJ8 451 aa13.74□□□□□ -0.21
SNX1-208ENST00000559844 RNASE1P07998 156 aaKnown RBP13.74□□□□□ -0.21
SNX1-208ENST00000559844 CSN1S1P47710 185 aa13.74□□□□□ -0.21
SNX1-208ENST00000559844 GFI1BQ5VTD9 330 aa13.74□□□□□ -0.21
SNX1-208ENST00000559844 ZFP30Q9Y2G7 519 aa13.74□□□□□ -0.21
SNX1-208ENST00000559844 DIRC3C9JPN6 131 aa13.73□□□□□ -0.21
SNX1-208ENST00000559844 IGLV2-11P01706 119 aa13.73□□□□□ -0.21
SNX1-208ENST00000559844 TRGV3P03979 118 aa13.73□□□□□ -0.21
SNX1-208ENST00000559844 CBLN1P23435 193 aa13.73□□□□□ -0.21
SNX1-208ENST00000559844 TCL1AP56279 114 aa13.73□□□□□ -0.21
SNX1-208ENST00000559844 CT83Q5H943 113 aa13.73□□□□□ -0.21
SNX1-208ENST00000559844 PRNTQ86SH4 94 aa13.73□□□□□ -0.21
SNX1-208ENST00000559844 TSKUQ8WUA8 353 aa13.73□□□□□ -0.21
SNX1-208ENST00000559844 DAZAP1Q96EP5 407 aaKnown RBP13.73□□□□□ -0.21
SNX1-208ENST00000559844 MRPL18Q9H0U6 180 aaKnown RBP13.73□□□□□ -0.21
SNX1-208ENST00000559844 NAT8BQ9UHF3 227 aa13.73□□□□□ -0.21
SNX1-208ENST00000559844 FAM181BA6NEQ2 426 aa13.72□□□□□ -0.21
SNX1-208ENST00000559844 SNURFLB1AK76 121 aa13.72□□□□□ -0.21
SNX1-208ENST00000559844 RASL11AQ6T310 242 aa13.72□□□□□ -0.21
SNX1-208ENST00000559844 RPP21Q9H633 154 aaKnown RBP13.72□□□□□ -0.21
SNX1-208ENST00000559844 PSG3Q16557 428 aa13.72□□□□□ -0.21
SNX1-208ENST00000559844 LINC00527Q9UJ94 153 aa13.72□□□□□ -0.21
SNX1-208ENST00000559844 C2CD3Q4AC94 2353 aa13.71□□□□□ -0.21
SNX1-208ENST00000559844 C19orf71A6NCJ1 209 aa13.71□□□□□ -0.21
SNX1-208ENST00000559844 P01737 135 aa13.71□□□□□ -0.21
SNX1-208ENST00000559844 PDZD11Q5EBL8 140 aa13.71□□□□□ -0.21
SNX1-208ENST00000559844 USMG5Q96IX5 58 aa13.71□□□□□ -0.21
SNX1-208ENST00000559844 PRSS22Q9GZN4 317 aa13.71□□□□□ -0.21
SNX1-208ENST00000559844 PSG8Q9UQ74 426 aa13.71□□□□□ -0.21
SNX1-208ENST00000559844 A0A087X0K7 114 aa13.71□□□□□ -0.22
SNX1-208ENST00000559844 TRAV8-1A0A0A6YYK1 113 aa13.71□□□□□ -0.22
SNX1-208ENST00000559844 IGHV3-35A0A0C4DH35 117 aa13.71□□□□□ -0.22
SNX1-208ENST00000559844 FBLL1A6NHQ2 334 aaKnown RBP13.71□□□□□ -0.22
SNX1-208ENST00000559844 CA1P00915 261 aaPredicted RBP13.71□□□□□ -0.22
SNX1-208ENST00000559844 PPIFP30405 207 aaKnown RBP13.71□□□□□ -0.22
SNX1-208ENST00000559844 C1orf194Q5T5A4 169 aa13.71□□□□□ -0.22
SNX1-208ENST00000559844 OR4B1Q8NGF8 309 aa13.71□□□□□ -0.22
SNX1-208ENST00000559844 NPFFR1Q9GZQ6 430 aa13.71□□□□□ -0.22
SNX1-208ENST00000559844 ZNF580Q9UK33 172 aa13.71□□□□□ -0.22
SNX1-208ENST00000559844 A8MWL6 223 aa13.7□□□□□ -0.22
SNX1-208ENST00000559844 HLA-DQA1P01909 254 aa13.7□□□□□ -0.22
SNX1-208ENST00000559844 TPPP2P59282 170 aa13.7□□□□□ -0.22
SNX1-208ENST00000559844 BLCAPP62952 87 aa13.7□□□□□ -0.22
SNX1-208ENST00000559844 WIPF2Q8TF74 440 aaPredicted RBP13.7□□□□□ -0.22
SNX1-208ENST00000559844 METTL26Q96S19 204 aa13.7□□□□□ -0.22
SNX1-208ENST00000559844 ZNF331Q9NQX6 463 aaPredicted RBP13.7□□□□□ -0.22
SNX1-208ENST00000559844 SMAD5-AS1Q9Y6J3 95 aa13.7□□□□□ -0.22
SNX1-208ENST00000559844 BUB3O43684 328 aa13.69□□□□□ -0.22
SNX1-208ENST00000559844 SPINK4O60575 86 aa13.69□□□□□ -0.22
SNX1-208ENST00000559844 FABP4P15090 132 aa13.69□□□□□ -0.22
SNX1-208ENST00000559844 TMEM136Q6ZRR5 245 aa13.69□□□□□ -0.22
SNX1-208ENST00000559844 GBGT1Q8N5D6 347 aa13.69□□□□□ -0.22
SNX1-208ENST00000559844 OR10D4PQ8NGN7 298 aa13.69□□□□□ -0.22
SNX1-208ENST00000559844 MRPL54Q6P161 138 aaKnown RBP13.69□□□□□ -0.22
SNX1-208ENST00000559844 NUP35Q8NFH5 326 aa13.69□□□□□ -0.22
SNX1-208ENST00000559844 HIST1H2BLQ99880 126 aa13.69□□□□□ -0.22
SNX1-208ENST00000559844 GFRA4Q9GZZ7 299 aa13.69□□□□□ -0.22
SNX1-208ENST00000559844 CLPSL1A2RUU4 121 aa13.68□□□□□ -0.22
SNX1-208ENST00000559844 ZNF785A8K8V0 405 aa13.68□□□□□ -0.22
SNX1-208ENST00000559844 NPIPB6E9PJ23 425 aa13.68□□□□□ -0.22
SNX1-208ENST00000559844 M0R3E3 92 aa13.68□□□□□ -0.22
SNX1-208ENST00000559844 LINC00322Q6ZN03 302 aaPredicted RBP13.68□□□□□ -0.22
SNX1-208ENST00000559844 ATP5L2Q7Z4Y8 100 aa13.68□□□□□ -0.22
SNX1-208ENST00000559844 PRIMA1Q86XR5 153 aa13.68□□□□□ -0.22
SNX1-208ENST00000559844 NEU1Q99519 415 aa13.68□□□□□ -0.22
SNX1-208ENST00000559844 IGHV3OR16-8A0A075B7F1 116 aa13.67□□□□□ -0.22
SNX1-208ENST00000559844 FAM231BA6NCW3 169 aa13.67□□□□□ -0.22
SNX1-208ENST00000559844 ARL3P36405 182 aa13.67□□□□□ -0.22
SNX1-208ENST00000559844 SLC35B1P78383 322 aa13.67□□□□□ -0.22
SNX1-208ENST00000559844 Q6ZS46 218 aa13.67□□□□□ -0.22
SNX1-208ENST00000559844 PACRGQ96M98 296 aaPredicted RBP13.67□□□□□ -0.22
SNX1-208ENST00000559844 SLC50A1Q9BRV3 221 aa13.67□□□□□ -0.22
SNX1-208ENST00000559844 HIGD1CA8MV81 97 aa13.67□□□□□ -0.22
SNX1-208ENST00000559844 FRMD6-AS1P0C7T7 363 aa13.67□□□□□ -0.22
SNX1-208ENST00000559844 RAB4BP61018 213 aa13.67□□□□□ -0.22
SNX1-208ENST00000559844 NOL4LQ96MY1 436 aaPredicted RBP13.67□□□□□ -0.22
SNX1-208ENST00000559844 RBM14-RBM4A0A0A0MSL8 147 aaKnown RBP13.66□□□□□ -0.22
SNX1-208ENST00000559844 A0A0G2JLM5 398 aa13.66□□□□□ -0.22
SNX1-208ENST00000559844 CRISP2P16562 243 aa13.66□□□□□ -0.22
SNX1-208ENST00000559844 U3KQE9 123 aa13.66□□□□□ -0.22
SNX1-208ENST00000559844 IGLV1-40P01703 118 aa13.65□□□□□ -0.22
SNX1-208ENST00000559844 PF4V1P10720 104 aa13.65□□□□□ -0.22
SNX1-208ENST00000559844 TMEM18Q96B42 140 aa13.65□□□□□ -0.22
SNX1-208ENST00000559844 ZNF702PQ9H963 129 aa13.65□□□□□ -0.22
SNX1-208ENST00000559844 NDUFA4O00483 81 aa13.65□□□□□ -0.22
SNX1-208ENST00000559844 CHEK1O14757 476 aa13.65□□□□□ -0.22
SNX1-208ENST00000559844 AMBPP02760 352 aa13.65□□□□□ -0.22
SNX1-208ENST00000559844 SAPCD1Q5SSQ6 148 aa13.65□□□□□ -0.22
SNX1-208ENST00000559844 C16orf54Q6UWD8 224 aa13.65□□□□□ -0.22
SNX1-208ENST00000559844 Q6ZSV7 163 aa13.65□□□□□ -0.22
SNX1-208ENST00000559844 ZC2HC1AQ96GY0 325 aa13.65□□□□□ -0.22
SNX1-208ENST00000559844 NIT2Q9NQR4 276 aa13.65□□□□□ -0.22
SNX1-208ENST00000559844 CT45A10P0DMU9 189 aa13.64□□□□□ -0.23
SNX1-208ENST00000559844 Q0VG73 95 aa13.64□□□□□ -0.23
SNX1-208ENST00000559844 UNQ5830/PRO19650/PRO19816Q6UY13 95 aa13.64□□□□□ -0.23
SNX1-208ENST00000559844 APCSP02743 223 aa13.63□□□□□ -0.23
SNX1-208ENST00000559844 CFHR3Q02985 330 aa13.63□□□□□ -0.23
SNX1-208ENST00000559844 TMEM95Q3KNT9 176 aa13.63□□□□□ -0.23
SNX1-208ENST00000559844 PYY3Q5JQD4 70 aa13.63□□□□□ -0.23
Retrieved 100 of 20,778 RNA–protein pairs in 50.6 ms