RNA–Protein interactions for RNA: ENST00000558088.1

VPS13C-205, Transcript of vacuolar protein sorting 13 homolog C, humanhuman

TSL 2

Gene VPS13C, Length 549 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13C-205ENST00000558088 MIA2Q96PC5 1412 aa-0.71□□□□□ -2.52
VPS13C-205ENST00000558088 PTPRQQ9UMZ3 2332 aa-0.71□□□□□ -2.52
VPS13C-205ENST00000558088 K7ERJ3 54 aa-0.71□□□□□ -2.52
VPS13C-205ENST00000558088 IGHV3-30P01768 117 aa-0.71□□□□□ -2.52
VPS13C-205ENST00000558088 IFNA4P05014 189 aa-0.71□□□□□ -2.52
VPS13C-205ENST00000558088 SERPINA6P08185 405 aa-0.71□□□□□ -2.52
VPS13C-205ENST00000558088 CXCL1P09341 107 aa-0.71□□□□□ -2.52
VPS13C-205ENST00000558088 IGHV3-30-5P0DP03 117 aa-0.71□□□□□ -2.52
VPS13C-205ENST00000558088 ATP5G3P48201 142 aa-0.71□□□□□ -2.52
VPS13C-205ENST00000558088 ARPP19P56211 112 aa-0.71□□□□□ -2.52
VPS13C-205ENST00000558088 ZCCHC23Q6ZST2 131 aa-0.71□□□□□ -2.52
VPS13C-205ENST00000558088 TRAPPC5Q8IUR0 188 aa-0.71□□□□□ -2.52
VPS13C-205ENST00000558088 GNPDA2Q8TDQ7 276 aa-0.71□□□□□ -2.52
VPS13C-205ENST00000558088 TEX37Q96LM6 180 aa-0.71□□□□□ -2.52
VPS13C-205ENST00000558088 MAP1LC3BQ9GZQ8 125 aa-0.71□□□□□ -2.52
VPS13C-205ENST00000558088 RNF122Q9H9V4 155 aa-0.71□□□□□ -2.52
VPS13C-205ENST00000558088 ATP6V1DQ9Y5K8 247 aa-0.71□□□□□ -2.52
VPS13C-205ENST00000558088 APC2O95996 2303 aa-0.71□□□□□ -2.52
VPS13C-205ENST00000558088 NCOR1O75376 2440 aa-0.72□□□□□ -2.52
VPS13C-205ENST00000558088 TNXBP22105 4242 aa-0.72□□□□□ -2.52
VPS13C-205ENST00000558088 BBIP1A8MTZ0 92 aa-0.72□□□□□ -2.52
VPS13C-205ENST00000558088 F2Z2F3 143 aa-0.72□□□□□ -2.52
VPS13C-205ENST00000558088 IFNA7P01567 189 aa-0.72□□□□□ -2.52
VPS13C-205ENST00000558088 GYPBP06028 91 aa-0.72□□□□□ -2.52
VPS13C-205ENST00000558088 IDO1P14902 403 aa-0.72□□□□□ -2.52
VPS13C-205ENST00000558088 PHBP35232 272 aa-0.72□□□□□ -2.52
VPS13C-205ENST00000558088 EDDM3AQ14507 147 aa-0.72□□□□□ -2.52
VPS13C-205ENST00000558088 CSAG1Q6PB30 78 aa-0.72□□□□□ -2.52
VPS13C-205ENST00000558088 C5orf56Q8N8D9 126 aa-0.72□□□□□ -2.52
VPS13C-205ENST00000558088 CCDC42Q96M95 316 aa-0.72□□□□□ -2.52
VPS13C-205ENST00000558088 OR4C12Q96R67 309 aa-0.72□□□□□ -2.52
VPS13C-205ENST00000558088 MYO7AQ13402 2215 aa-0.72□□□□□ -2.53
VPS13C-205ENST00000558088 SETXQ7Z333 2677 aaKnown RBP-0.72□□□□□ -2.53
VPS13C-205ENST00000558088 FMN1Q68DA7 1419 aa-0.72□□□□□ -2.53
VPS13C-205ENST00000558088 JMJD1CQ15652 2540 aa-0.73□□□□□ -2.53
VPS13C-205ENST00000558088 TRBV19A0A075B6N1 114 aa-0.73□□□□□ -2.53
VPS13C-205ENST00000558088 TRAV4A0A0B4J268 109 aa-0.73□□□□□ -2.53
VPS13C-205ENST00000558088 C3orf85A0A1B0GTC6 90 aa-0.73□□□□□ -2.53
VPS13C-205ENST00000558088 HMGB3O15347 200 aaKnown RBP-0.73□□□□□ -2.53
VPS13C-205ENST00000558088 ATP5HO75947 161 aa-0.73□□□□□ -2.53
VPS13C-205ENST00000558088 CRHP06850 196 aa-0.73□□□□□ -2.53
VPS13C-205ENST00000558088 MSMO1Q15800 293 aa-0.73□□□□□ -2.53
VPS13C-205ENST00000558088 IQCJQ1A5X6 159 aa-0.73□□□□□ -2.53
VPS13C-205ENST00000558088 TMEM14BQ9NUH8 114 aa-0.73□□□□□ -2.53
VPS13C-205ENST00000558088 MRPL36Q9P0J6 103 aaKnown RBP-0.73□□□□□ -2.53
VPS13C-205ENST00000558088 DOPEY1Q5JWR5 2465 aa-0.73□□□□□ -2.53
VPS13C-205ENST00000558088 HIGD1CA8MV81 97 aa-0.74□□□□□ -2.53
VPS13C-205ENST00000558088 MT-ND6P03923 174 aa-0.74□□□□□ -2.53
VPS13C-205ENST00000558088 TCRBP04435 133 aa-0.74□□□□□ -2.53
VPS13C-205ENST00000558088 MPC1LP0DKB6 136 aa-0.74□□□□□ -2.53
VPS13C-205ENST00000558088 TAF1AQ15573 450 aaPredicted RBP-0.74□□□□□ -2.53
VPS13C-205ENST00000558088 FAM216BQ8N7L0 139 aa-0.74□□□□□ -2.53
VPS13C-205ENST00000558088 DDI1Q8WTU0 396 aa-0.74□□□□□ -2.53
VPS13C-205ENST00000558088 EFCAB11Q9BUY7 163 aa-0.74□□□□□ -2.53
VPS13C-205ENST00000558088 TPRKBQ9Y3C4 175 aa-0.74□□□□□ -2.53
VPS13C-205ENST00000558088 FAM32AQ9Y421 112 aaKnown RBP-0.74□□□□□ -2.53
VPS13C-205ENST00000558088 PDZD2O15018 2839 aa-0.74□□□□□ -2.53
VPS13C-205ENST00000558088 CHD9Q3L8U1 2897 aa-0.75□□□□□ -2.53
VPS13C-205ENST00000558088 A0A1W2PPB8 328 aa-0.75□□□□□ -2.53
VPS13C-205ENST00000558088 SMIM23A6NLE4 172 aa-0.75□□□□□ -2.53
VPS13C-205ENST00000558088 A6NN06 94 aa-0.75□□□□□ -2.53
VPS13C-205ENST00000558088 KIR3DP1A8MWS1 328 aa-0.75□□□□□ -2.53
VPS13C-205ENST00000558088 LYPLA2O95372 231 aa-0.75□□□□□ -2.53
VPS13C-205ENST00000558088 RPS17P08708 135 aaKnown RBP-0.75□□□□□ -2.53
VPS13C-205ENST00000558088 MAGOHP61326 146 aaKnown RBP-0.75□□□□□ -2.53
VPS13C-205ENST00000558088 HIST1H3AP68431 136 aa-0.75□□□□□ -2.53
VPS13C-205ENST00000558088 ISOC1Q96CN7 298 aa-0.75□□□□□ -2.53
VPS13C-205ENST00000558088 DSCR8Q96T75 97 aa-0.75□□□□□ -2.53
VPS13C-205ENST00000558088 SIGMAR1Q99720 223 aa-0.75□□□□□ -2.53
VPS13C-205ENST00000558088 CTNNBIP1Q9NSA3 81 aaPredicted RBP-0.75□□□□□ -2.53
VPS13C-205ENST00000558088 KMT2CQ8NEZ4 4911 aaKnown RBP-0.75□□□□□ -2.53
VPS13C-205ENST00000558088 CEP164Q9UPV0 1460 aa-0.75□□□□□ -2.53
VPS13C-205ENST00000558088 HERC1Q15751 4861 aa-0.75□□□□□ -2.53
VPS13C-205ENST00000558088 NF1P21359 2839 aa-0.75□□□□□ -2.53
VPS13C-205ENST00000558088 COL24A1Q17RW2 1714 aa-0.75□□□□□ -2.53
VPS13C-205ENST00000558088 NBDYA0A0U1RRE5 68 aa-0.76□□□□□ -2.53
VPS13C-205ENST00000558088 C5orf58C9J3I9 102 aa-0.76□□□□□ -2.53
VPS13C-205ENST00000558088 PIAS1O75925 651 aa-0.76□□□□□ -2.53
VPS13C-205ENST00000558088 RPP14O95059 124 aaKnown RBP-0.76□□□□□ -2.53
VPS13C-205ENST00000558088 NMBP08949 121 aa-0.76□□□□□ -2.53
VPS13C-205ENST00000558088 BTF3L4Q96K17 158 aa-0.76□□□□□ -2.53
VPS13C-205ENST00000558088 LLPHQ9BRT6 129 aaKnown RBP-0.76□□□□□ -2.53
VPS13C-205ENST00000558088 PARVBQ9HBI1 364 aa-0.76□□□□□ -2.53
VPS13C-205ENST00000558088 MRPL35Q9NZE8 188 aaKnown RBP-0.76□□□□□ -2.53
VPS13C-205ENST00000558088 COMMD3Q9UBI1 195 aa-0.76□□□□□ -2.53
VPS13C-205ENST00000558088 SNAPC4Q5SXM2 1469 aa-0.76□□□□□ -2.53
VPS13C-205ENST00000558088 A0A0G2JMM0 328 aa-0.77□□□□□ -2.53
VPS13C-205ENST00000558088 C9JAW5 83 aa-0.77□□□□□ -2.53
VPS13C-205ENST00000558088 CETN3O15182 167 aa-0.77□□□□□ -2.53
VPS13C-205ENST00000558088 HIST1H2BKO60814 126 aa-0.77□□□□□ -2.53
VPS13C-205ENST00000558088 HIST1H2BJP06899 126 aa-0.77□□□□□ -2.53
VPS13C-205ENST00000558088 IL7P13232 177 aa-0.77□□□□□ -2.53
VPS13C-205ENST00000558088 KLKP1Q107X0 134 aa-0.77□□□□□ -2.53
VPS13C-205ENST00000558088 SPA17Q15506 151 aa-0.77□□□□□ -2.53
VPS13C-205ENST00000558088 TMEM229BQ8NBD8 167 aa-0.77□□□□□ -2.53
VPS13C-205ENST00000558088 OR5AK2Q8NH90 309 aa-0.77□□□□□ -2.53
VPS13C-205ENST00000558088 STAB2Q8WWQ8 2551 aa-0.77□□□□□ -2.53
VPS13C-205ENST00000558088 ARL5CA6NH57 179 aa-0.78□□□□□ -2.53
VPS13C-205ENST00000558088 IFNA14P01570 189 aa-0.78□□□□□ -2.53
VPS13C-205ENST00000558088 IGKCP01834 107 aa-0.78□□□□□ -2.53
Retrieved 100 of 20,778 RNA–protein pairs in 32 ms