RNA–Protein interactions for RNA: ENST00000556726.5

CCDC88C-211, Transcript of coiled-coil domain containing 88C, humanhuman

TSL 5

Gene CCDC88C, Length 3,617 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-211ENST00000556726 FAM106CPP0CH98 169 aa9.63□□□□□ -0.87
CCDC88C-211ENST00000556726 RHOGP84095 191 aa9.63□□□□□ -0.87
CCDC88C-211ENST00000556726 C5orf64Q2M2E5 130 aa9.63□□□□□ -0.87
CCDC88C-211ENST00000556726 KIR2DL5AQ8N109 375 aa9.63□□□□□ -0.87
CCDC88C-211ENST00000556726 C7orf71A4D174 169 aa9.63□□□□□ -0.87
CCDC88C-211ENST00000556726 GOSR1O95249 250 aa9.63□□□□□ -0.87
CCDC88C-211ENST00000556726 MGPP08493 103 aa9.63□□□□□ -0.87
CCDC88C-211ENST00000556726 CACNG7P62955 275 aa9.63□□□□□ -0.87
CCDC88C-211ENST00000556726 PF4V1P10720 104 aa9.62□□□□□ -0.87
CCDC88C-211ENST00000556726 C16orf92Q96LL3 132 aa9.62□□□□□ -0.87
CCDC88C-211ENST00000556726 C1RLQ9NZP8 487 aa9.62□□□□□ -0.87
CCDC88C-211ENST00000556726 DNLZQ5SXM8 178 aa9.62□□□□□ -0.87
CCDC88C-211ENST00000556726 IGHV1-24A0A0C4DH33 117 aa9.62□□□□□ -0.87
CCDC88C-211ENST00000556726 SYS1-DBNDD2H3BUS1 97 aa9.62□□□□□ -0.87
CCDC88C-211ENST00000556726 KHDC1LQ5JSQ8 128 aa9.62□□□□□ -0.87
CCDC88C-211ENST00000556726 M0R381 172 aa9.61□□□□□ -0.87
CCDC88C-211ENST00000556726 NCOR1P1Q9H4R4 102 aa9.61□□□□□ -0.87
CCDC88C-211ENST00000556726 CHODLQ9H9P2 273 aa9.61□□□□□ -0.87
CCDC88C-211ENST00000556726 S100A7P31151 101 aa9.61□□□□□ -0.87
CCDC88C-211ENST00000556726 FBLN7Q53RD9 439 aa9.61□□□□□ -0.87
CCDC88C-211ENST00000556726 THAP8Q8NA92 274 aa9.61□□□□□ -0.87
CCDC88C-211ENST00000556726 SH2D1AO60880 128 aa9.61□□□□□ -0.87
CCDC88C-211ENST00000556726 GP9P14770 177 aa9.61□□□□□ -0.87
CCDC88C-211ENST00000556726 FER1L6-AS1Q8NA97 138 aa9.61□□□□□ -0.87
CCDC88C-211ENST00000556726 TRBV19A0A075B6N1 114 aa9.6□□□□□ -0.87
CCDC88C-211ENST00000556726 VWC2LB2RUY7 222 aa9.6□□□□□ -0.87
CCDC88C-211ENST00000556726 F5H697 171 aa9.6□□□□□ -0.87
CCDC88C-211ENST00000556726 CDSNQ15517 529 aa9.6□□□□□ -0.87
CCDC88C-211ENST00000556726 FAM120AOSQ5T036 256 aa9.6□□□□□ -0.87
CCDC88C-211ENST00000556726 TMEM78Q5T7P6 136 aa9.6□□□□□ -0.87
CCDC88C-211ENST00000556726 LCNL1Q6ZST4 164 aa9.6□□□□□ -0.87
CCDC88C-211ENST00000556726 ZNF491Q8N8L2 437 aa9.6□□□□□ -0.87
CCDC88C-211ENST00000556726 ASH1LQ9NR48 2969 aaKnown RBP9.6□□□□□ -0.87
CCDC88C-211ENST00000556726 SHANK2-AS3Q9BTD1 123 aa9.6□□□□□ -0.87
CCDC88C-211ENST00000556726 TNRC6BQ9UPQ9 1833 aaKnown RBP9.6□□□□□ -0.87
CCDC88C-211ENST00000556726 GCSHP23434 173 aa9.6□□□□□ -0.87
CCDC88C-211ENST00000556726 VGLL1Q99990 258 aa9.6□□□□□ -0.87
CCDC88C-211ENST00000556726 TEX22C9J3V5 150 aa9.59□□□□□ -0.87
CCDC88C-211ENST00000556726 DLX6P56179 175 aa9.59□□□□□ -0.87
CCDC88C-211ENST00000556726 PSG3Q16557 428 aa9.59□□□□□ -0.87
CCDC88C-211ENST00000556726 LINC00311Q8N616 119 aa9.59□□□□□ -0.87
CCDC88C-211ENST00000556726 BPESC1Q9GZL8 116 aa9.59□□□□□ -0.87
CCDC88C-211ENST00000556726 RAI1Q7Z5J4 1906 aaPredicted RBP9.59□□□□□ -0.87
CCDC88C-211ENST00000556726 K7EIM0 57 aa9.59□□□□□ -0.87
CCDC88C-211ENST00000556726 K7ENP7 123 aa9.59□□□□□ -0.87
CCDC88C-211ENST00000556726 IGLV1-47P01700 117 aa9.59□□□□□ -0.87
CCDC88C-211ENST00000556726 KLRB1Q12918 225 aa9.59□□□□□ -0.87
CCDC88C-211ENST00000556726 PRSS57Q6UWY2 283 aa9.59□□□□□ -0.87
CCDC88C-211ENST00000556726 ORMDL3Q8N138 153 aa9.59□□□□□ -0.87
CCDC88C-211ENST00000556726 MSRB1Q9NZV6 116 aa9.59□□□□□ -0.87
CCDC88C-211ENST00000556726 PVRIGQ6DKI7 326 aa9.58□□□□□ -0.88
CCDC88C-211ENST00000556726 FAM71F2Q6NXP2 309 aa9.58□□□□□ -0.88
CCDC88C-211ENST00000556726 TMEM160Q9NX00 188 aa9.58□□□□□ -0.88
CCDC88C-211ENST00000556726 MRPL27Q9P0M9 148 aaKnown RBP9.58□□□□□ -0.88
CCDC88C-211ENST00000556726 TRAV30A0A087WSZ9 112 aa9.58□□□□□ -0.88
CCDC88C-211ENST00000556726 TRAV8-6A0A0B4J262 113 aa9.58□□□□□ -0.88
CCDC88C-211ENST00000556726 ATP5L2Q7Z4Y8 100 aa9.58□□□□□ -0.88
CCDC88C-211ENST00000556726 TNFRSF14Q92956 283 aa9.58□□□□□ -0.88
CCDC88C-211ENST00000556726 TRGV3P03979 118 aa9.58□□□□□ -0.88
CCDC88C-211ENST00000556726 ZNF414Q96IQ9 312 aa9.58□□□□□ -0.88
CCDC88C-211ENST00000556726 PAX1P15863 534 aa9.57□□□□□ -0.88
CCDC88C-211ENST00000556726 BMI1P35226 326 aa9.57□□□□□ -0.88
CCDC88C-211ENST00000556726 SAA4P35542 130 aa9.57□□□□□ -0.88
CCDC88C-211ENST00000556726 PCP4P48539 62 aa9.57□□□□□ -0.88
CCDC88C-211ENST00000556726 DEFB1P60022 68 aa9.57□□□□□ -0.88
CCDC88C-211ENST00000556726 FAM106AQ4KMX7 169 aa9.57□□□□□ -0.88
CCDC88C-211ENST00000556726 FAM231DQ6ZW35 169 aa9.57□□□□□ -0.88
CCDC88C-211ENST00000556726 METTL26Q96S19 204 aa9.57□□□□□ -0.88
CCDC88C-211ENST00000556726 ZFP30Q9Y2G7 519 aa9.57□□□□□ -0.88
CCDC88C-211ENST00000556726 I3L2K1 104 aa9.57□□□□□ -0.88
CCDC88C-211ENST00000556726 C3orf36Q3SXR2 165 aa9.57□□□□□ -0.88
CCDC88C-211ENST00000556726 LDLRAD2Q5SZI1 272 aa9.57□□□□□ -0.88
CCDC88C-211ENST00000556726 KAAG1Q9UBP8 84 aa9.57□□□□□ -0.88
CCDC88C-211ENST00000556726 MTORP42345 2549 aa9.57□□□□□ -0.88
CCDC88C-211ENST00000556726 GATA1P15976 413 aaPredicted RBP9.57□□□□□ -0.88
CCDC88C-211ENST00000556726 PSG9Q00887 426 aa9.57□□□□□ -0.88
CCDC88C-211ENST00000556726 AMMECR1LQ6DCA0 310 aa9.57□□□□□ -0.88
CCDC88C-211ENST00000556726 TRAV40A0A0B4J280 105 aa9.56□□□□□ -0.88
CCDC88C-211ENST00000556726 ATP6V0E1O15342 81 aa9.56□□□□□ -0.88
CCDC88C-211ENST00000556726 LTAP01374 205 aa9.56□□□□□ -0.88
CCDC88C-211ENST00000556726 HIST1H1AQ02539 215 aaPredicted RBP9.56□□□□□ -0.88
CCDC88C-211ENST00000556726 CBY1Q9Y3M2 126 aa9.56□□□□□ -0.88
CCDC88C-211ENST00000556726 FOXC2Q99958 501 aa9.56□□□□□ -0.88
CCDC88C-211ENST00000556726 MAP1LC3AQ9H492 121 aa9.56□□□□□ -0.88
CCDC88C-211ENST00000556726 PKD1L2Q7Z442 2459 aa9.56□□□□□ -0.88
CCDC88C-211ENST00000556726 PSMB11A5LHX3 300 aa9.56□□□□□ -0.88
CCDC88C-211ENST00000556726 LEPP41159 167 aa9.56□□□□□ -0.88
CCDC88C-211ENST00000556726 RPL24P83731 157 aaKnown RBP9.56□□□□□ -0.88
CCDC88C-211ENST00000556726 SAPCD1Q5SSQ6 148 aa9.56□□□□□ -0.88
CCDC88C-211ENST00000556726 SFTA2Q6UW10 78 aa9.56□□□□□ -0.88
CCDC88C-211ENST00000556726 DYNAPQ8N1N2 210 aa9.56□□□□□ -0.88
CCDC88C-211ENST00000556726 TRAV26-2A0A0B4J265 109 aa9.55□□□□□ -0.88
CCDC88C-211ENST00000556726 LOXL1Q08397 574 aaPredicted RBP9.55□□□□□ -0.88
CCDC88C-211ENST00000556726 MBD6Q96DN6 1003 aa9.55□□□□□ -0.88
CCDC88C-211ENST00000556726 H3BVH4 76 aa9.55□□□□□ -0.88
CCDC88C-211ENST00000556726 PRTN3P24158 256 aa9.55□□□□□ -0.88
CCDC88C-211ENST00000556726 C12orf54Q6X4T0 127 aa9.55□□□□□ -0.88
CCDC88C-211ENST00000556726 MAPK1IP1LQ8NDC0 245 aa9.55□□□□□ -0.88
CCDC88C-211ENST00000556726 IL17RELQ6ZVW7 336 aa9.55□□□□□ -0.88
CCDC88C-211ENST00000556726 PTPRBP23467 1997 aa9.55□□□□□ -0.88
Retrieved 100 of 20,778 RNA–protein pairs in 33.3 ms